Dbfetch
LOCUS NM_001299775 3281 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster verprolin 1, transcript variant L (Vrp1), mRNA. ACCESSION NM_001299775 VERSION NM_001299775.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3281) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3281) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3281) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3281) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3281) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3281) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3281) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3281) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3281) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3281) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3281) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3281) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3281) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3281) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3281) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3281) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3281) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3281) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3281 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3281 /gene="Vrp1" /locus_tag="Dmel_CG13503" /gene_synonym="CG13503; D-WIP; Dmel\CG13503; Dm_Vrp1; dwip; dWIP; DWip; DWiP; DWIP; sltr; Sltr; solas; vrp; vrp1; wip; Wip; WIP" /note="Verprolin 1" /map="58B8-58B9" /db_xref="FLYBASE:FBgn0243516" /db_xref="GeneID:37521" CDS 81..2384 /gene="Vrp1" /locus_tag="Dmel_CG13503" /gene_synonym="CG13503; D-WIP; Dmel\CG13503; Dm_Vrp1; dwip; dWIP; DWip; DWiP; DWIP; sltr; Sltr; solas; vrp; vrp1; wip; Wip; WIP" /note="CG13503 gene product from transcript CG13503-RL; CG13503-PL; Vrp1-PL; WASp interacting protein; verprolin 1; WASP-interacting protein; D-WASp-interacting protein; solitary; veroprolin; Verprolin1; drosophila WIP" /codon_start=1 /product="verprolin 1, isoform L" /protein_id="NP_001286704.1" /db_xref="FLYBASE:FBpp0309744" /db_xref="GeneID:37521" /db_xref="FLYBASE:FBgn0243516" /translation="MRLKRSSKQKMAIPPPPGPPPPPGPPPPPAMGGLKLGGAGGADA RSALLSSIQKGTKLKKTTTVDKSGPALSGKVCGGDGGAGIGAKRTLNNNTSTSNHNNS SSSSNGLGNGTPKLGGLFEGLSQMPKLKPVNGIRATPSAGSAATTTSKSTTNSSAQQR SNSPPAATSASNASNGPMDFNTELTKHLTLKRQKQQQQQQPQPPTNNTHINATEANLR TNRGPPPQPPKSANSNDSILERMNIPRTAPTPPFGNSSSVKAASPTLSDSGSNSSGSG GGSGSVKSKAANLNISLGNSFVNSSKSTVSASTASLNSSLTSSTGSVRNLAPNKSTLF GGSSGSSSGSSSGGGYASVHKSSPPSTADSTPSVTPTPPPLQLPMKPAISFGKPNFAP KPPGLNQLAMANGQQRPAVTRHHSMKSPRSPPAAGIVNGLVFPTQQHLGTLRGPLQFH GSESSSPNTSAGSMRCAPNPPKCKSPFLARPSVKPPPPPTPARSFSNTNLNNIGGSTM FSAVNTALIQSSAISSQAPSPPITQPPSSSSSSNSVAALRDQFRGGAGMSNGAPSPPL PPTPAPSSNPSSASASPKSLLRDNVKPIILNGGPLNPPAPPPHRSCPPPPPPQRQSSN QDRVKYWIDKTVYSFKKILHINRQGRHSGESVKVINMLNSKRNGGSGSGSAPVPPQRH SSIRPNAPSTPPTHMANASHQFGSSSGLSSGSGAGAAASVGRLVNDLETKFGKRFHNV TEFPKPPPFLNIQKVYPSRTFKATNGM" ORIGIN 1 ccagtcttaa gctaaagctt cgcagaggcg gacgcagaac tggcaatttc ttagggcccg 61 aagattcgta tccatcgaaa atgagattga agcgtagttc aaagcaaaaa atggctattc 121 cgccaccccc gggaccacca ccgccgccag gacctccacc gcctccggcg atgggtggtc 181 ttaaattggg cggcgcggga ggagcagacg cccgatctgc actgctgagt tcgatccaga 241 agggaacaaa actgaagaag accaccacgg tggacaagag tgggccagcg ctgtctggca 301 aggtgtgcgg aggagatgga ggagcaggta tcggagctaa gcgaaccctc aacaacaaca 361 ccagcaccag caatcacaac aacagcagca gtagcagcaa tggccttggc aatggaaccc 421 ccaaattggg aggcctgttc gaaggcctct cgcaaatgcc aaaactgaag cccgtgaacg 481 gcattcgcgc aacgccatcc gccggctcgg cagcaacaac gacatcgaaa tccacaacga 541 actcatccgc tcagcagcgg agcaacagcc cccccgccgc gacgagcgcc tcgaatgcca 601 gcaacggacc catggacttc aacacggagc tcaccaagca cttgacgttg aagcgccaaa 661 aacagcagca gcagcaacaa ccacagccac caaccaacaa cacacatatc aatgcaacag 721 aagccaatct gagaacaaat cggggaccac caccgcaacc gccaaagtca gccaactcaa 781 atgattcgat cttggagcgc atgaacatcc cccgcacagc gccgacaccc cccttcggca 841 acagttcgag tgtcaaagcg gcatcgccca cgctctcgga cagcggcagc aacagcagtg 901 ggagtggagg tggaagtgga agtgtcaaga gcaaggcggc caacctaaat atctcgttag 961 gcaatagttt tgtaaatagt tcaaaatcaa ccgtgagtgc ctcgaccgcg tccttaaaca 1021 gcagtctaac ctcctcgacg ggatcagtac gcaatctggc gccaaataag tccactctat 1081 ttggtggcag cagtggctct agttccggtt cgagttctgg tggtggttat gcatctgtgc 1141 ataaatcctc gccaccctca acggcagata gcacgccgtc ggtgacgccc acaccgccac 1201 cgcttcagct gccgatgaag ccggccatca gctttggcaa gcccaatttt gctccgaagc 1261 caccgggctt gaatcaactg gcgatggcca acggacagca gcgtccggcg gtgaccaggc 1321 accacagcat gaagtcgccc agatctccgc ctgcggccgg tatcgtcaac ggccttgtgt 1381 tccccaccca gcagcattta ggcaccctgc gcggtccact gcagttccat ggcagcgaat 1441 ccagcagccc caacaccagt gcaggcagta tgagatgtgc ccctaacccg ccaaagtgta 1501 agagtccttt ccttgcccgc ccatcggtaa aaccaccacc gccacccacg ccggctcgca 1561 gtttctccaa caccaatctg aacaatatcg gcggatcgac gatgttcagt gcggtgaaca 1621 cagctcttat ccagagctcg gccatcagtt ctcaggctcc ctcaccgcca attacccagc 1681 cgccatcatc gtcgagcagc agcaatagcg tggctgccct gcgcgaccaa ttccgtggag 1741 gcgccggaat gtctaacgga gcaccatcac cgccactgcc gccgacgccc gcaccctcgt 1801 ccaatccatc ctcagcaagc gccagtccca aatcgttgct gcgagacaat gtcaaaccta 1861 ttatcctaaa tggaggtcct ctaaatccgc cagcgccgcc accacaccgc agctgcccac 1921 ctccgccgcc tccacagcga cagtcgagca atcaggaccg agtgaagtac tggatagaca 1981 agacggtgta ctcctttaag aagatactcc atataaatcg ccaagggagg cacagtggcg 2041 agtcagtcaa ggttatcaat atgcttaaca gcaagcgcaa cggtggttcc ggatcgggat 2101 cagcgccagt tccgccgcag cgtcactcat ccattcggcc caacgcccca tcgacgccac 2161 caacgcacat ggccaatgcc tcgcatcagt ttggcagcag ctcgggcttg tcatcaggct 2221 cgggagcagg agctgcagcc agcgtgggtc gactggtcaa cgacttggag accaagttcg 2281 ggaagcgatt ccacaacgtc actgaattcc ccaagccgcc gccgtttcta aatatacaaa 2341 aagtctatcc tagtcgcacg tttaaggcca ccaatggtat gtagtcgagt gtgtgagcga 2401 gtgtgtttgt tttgtgagtg ttttatttaa gtacataaac atttagatgc attgtaactg 2461 cgattattgt tatatacaca ccacacacac acacacacac acggaatgct gttatataat 2521 tagttttctc ttaaggcaca cgctccggca ttttagtttc gaactcgaac gatctataca 2581 acgattcgta tatctaaata attttaattt taaaagtgta ttactaccag tatagattat 2641 tattgtatag gaagggaaag cccaggctta caatccacag cacacacata tatatgttaa 2701 atcccgcaga gtttagtaat ctttttaatt attgttgttt attttactgt taacaagcaa 2761 tgaaatgatt gcgtaaagcg cagcggagga atgttatttt gtatattgat tgcataacac 2821 taaagttgaa tagctttatc caaacattat atattttata aattttaatg ttatattttg 2881 ttacatttca aaagggaagg actatggaag cttcccctcg cgatattacc actaagcaca 2941 cacaatatta ttacgcatag ttatattttt acccaatcta tactataact ttatatgtac 3001 gtgtatatgt aaacagaagc caacccatat tgcattgtat ttccctgcgc ccccatttac 3061 atttctccta catgtagcgc atgcctttac ttttgtaccc ggctatcatt ttatatatat 3121 tgtacctacc aacgtctcta tatatatgca tatatattat acccgatgaa taatttttag 3181 tatgcaacag gcacattacg agtaattgtt tgttttagtt tcgaagttat cttttgaaga 3241 aacaataaac caaaattcat ttggataaaa tacatgaaca t //