Dbfetch
LOCUS NM_001085089 1338 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana histone acetyltransferase of the MYST family 2 (HAM2), mRNA. ACCESSION NM_001085089 VERSION NM_001085089.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1338) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 1338) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1338) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1338) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). FEATURES Location/Qualifiers source 1..1338 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..1338 /gene="HAM2" /locus_tag="AT5G09740" /gene_synonym="F17I14.70; F17I14_70; HAC11; HAG05; HAG5; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11; HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5; histone acetyltransferase of the MYST family 2" /note="Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2." /db_xref="Araport:AT5G09740" /db_xref="GeneID:830834" /db_xref="TAIR:AT5G09740" CDS 46..1149 /gene="HAM2" /locus_tag="AT5G09740" /gene_synonym="F17I14.70; F17I14_70; HAC11; HAG05; HAG5; HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11; HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5; histone acetyltransferase of the MYST family 2" /inference="Similar to RNA sequence, EST:INSD:BP821081.1,INSD:EH881937.1,INSD:EL094133.1, INSD:BP655882.1,INSD:AU229018.1,INSD:CK118918.1, INSD:BP627140.1,INSD:DR349537.1,INSD:AU237909.1, INSD:DR382043.1,INSD:BP853922.1,INSD:DR749556.1, INSD:BP646748.1,INSD:BP623873.1,INSD:BP800315.1, INSD:EL253858.1,INSD:EL281878.1,INSD:EL278862.1" /note="histone acetyltransferase of the MYST family 2 (HAM2); FUNCTIONS IN: histone acetyltransferase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Chromo domain (InterPro:IPR000953), Acyl-CoA N-acyltransferase (InterPro:IPR016181), MOZ/SAS-like protein (InterPro:IPR002717); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the MYST family 1 (TAIR:AT5G64610.1); Has 1870 Blast hits to 1533 proteins in 232 species: Archae - 0; Bacteria - 4; Metazoa - 1014; Fungi - 461; Plants - 151; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink)." /codon_start=1 /product="histone acetyltransferase of the MYST family 2" /protein_id="NP_001078558.1" /db_xref="GeneID:830834" /db_xref="TAIR:AT5G09740" /db_xref="Araport:AT5G09740" /translation="MGSSANTETNGNAPPPSSNQKPPATNGVDGSHPPPPPLTPDQAI IESDPSKKRKMGMLPLEVGTRVMCRWRDGKHHPVKVIERRRIHNGGQNDYEYYVHYTE FNRRLDEWTQLDQLDLDSVECAVDEKVEDKVTSLKMTRHQKRKIDETHIEGHEELDAA SLREHEEFTKVKNKVYAQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGY FSKEKHSEEAYNLACILTLPSYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLL SYRGYWTRVLLEILKKHKGNISIKELSDVTAIKAEDILSTLQSLELIQYRKGQHVICA DPKVLDRHLKAAGRGGLDVDASKLIWTPYKDQS" ORIGIN 1 tatgagaaag aaagcccacc cgggaatctc cgacccgacc gagaaatggg atcgtcagcg 61 aatacagaaa ccaacggcaa cgcaccgcca ccgtcgtcga atcaaaagcc tccggctacg 121 aacggcgttg atgggtctca tcctcctcct cctcctttaa ctcctgatca agctattata 181 gagtcggatc cgtcgaagaa gaggaaaatg gggatgcttc ctctagaagt gggtactcgt 241 gtgatgtgtc ggtggagaga cgggaaacac catccggtga aagtaattga gcgccggcgg 301 atacataacg gcggtcaaaa tgattacgag tattacgttc attacactga gtttaatagg 361 aggctggatg aatggactca gctggaccaa ctggaccttg attcagtaga gtgcgctgta 421 gatgaaaaag tggaagacaa ggtaacaagc ttgaagatga cacgtcacca gaagaggaag 481 atcgatgaga cacatataga gggtcatgaa gagctggatg cagcaagttt gcgtgaacat 541 gaagagttca cgaaagtgaa gaacaaggtt tatgcacaga atctctgcta cctggcaaag 601 ttatttcttg accacaaaac tctttactac gatgttgatt tgtttctatt ctacgttctt 661 tgcgaatgtg atgaccgagg atgccacatg gttgggtact tttcaaagga gaagcattcg 721 gaagaagcat acaacttagc ttgcattcta accctgcctt catatcaaag aaaaggctat 781 ggaaagttct taatagcctt ttcctatgaa ctgtcaaaga aagagggaaa agttgggaca 841 ccggaaagac ccttgtcgga tctaggctta ctaagctaca gaggttattg gactcgtgtt 901 ctattagaaa tcttgaaaaa acataaggga aacatttcta tcaaggagct gagcgacgtg 961 acagcaatca aagcggaaga tatattaagc acacttcaga gcctagaact gatacagtac 1021 aggaaaggac agcatgtgat ctgtgcggat ccaaaggttc tggaccgaca tctgaaagct 1081 gcaggccgag gtggtcttga tgtagatgct agcaaactga tttggacacc ttacaaggac 1141 cagagttaag agtaagtaca ctcctcttgt gccattggat ttgatttgag tgtgtaagta 1201 aagcgggctg tcttattctc ctgaaatgta agtgtacttt acttgtaaat gttgaaatcg 1261 tacttggaat ggtgtttgtt tacaactctt ataatgagga aatttgaagc aatttcatag 1321 gtccatcttt cttttgct //