Dbfetch
LOCUS NM_001022870 2953 bp mRNA linear PLN 16-AUG-2024 DEFINITION Schizosaccharomyces pombe U3 snoRNP-associated protein Utp21 (utp21), mRNA. ACCESSION NM_001022870 VERSION NM_001022870.3 DBLINK BioProject: PRJNA127 BioSample: SAMEA3138176 KEYWORDS RefSeq. SOURCE Schizosaccharomyces pombe (fission yeast) ORGANISM Schizosaccharomyces pombe Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. REFERENCE 1 (bases 1 to 2953) AUTHORS Schafer,B., Hansen,M. and Lang,B.F. TITLE Transcription and RNA-processing in fission yeast mitochondria JOURNAL RNA 11 (5), 785-795 (2005) PUBMED 15811919 REFERENCE 2 (bases 1 to 2953) AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 3 AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 4 (bases 1 to 2953) AUTHORS Trinkl,H., Lang,B.F. and Wolf,K. TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe JOURNAL Nucleic Acids Res 17 (16), 6730 (1989) PUBMED 2780299 REFERENCE 5 (bases 1 to 2953) AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W. TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations JOURNAL Eur J Biochem 169 (3), 527-537 (1987) PUBMED 2446871 REFERENCE 6 (bases 1 to 2953) AUTHORS Lang,B.F., Ahne,F. and Bonen,L. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene JOURNAL J Mol Biol 184 (3), 353-366 (1985) PUBMED 4046021 REFERENCE 7 (bases 1 to 2953) AUTHORS Lang,B.F. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans JOURNAL EMBO J 3 (9), 2129-2136 (1984) PUBMED 6092057 REFERENCE 8 (bases 1 to 2953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 9 AUTHORS Wood,V. and Rutherford,K. CONSRTM PomBase TITLE Direct Submission JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins building, Tennis Court Rd, Cambridge, United Kingdom REFERENCE 10 AUTHORS Wood,V. CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (03-JUL-2007) European Schizosaccharomyces genome sequencing project, Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_003421). On Jun 21, 2024 this sequence version replaced NM_001022870.2. FEATURES Location/Qualifiers source 1..2953 /organism="Schizosaccharomyces pombe" /mol_type="mRNA" /strain="972h-" /db_xref="taxon:4896" /chromosome="III" gene 1..2953 /gene="utp21" /locus_tag="SPOM_SPCC1672.07" /db_xref="GeneID:2539299" /db_xref="PomBase:SPCC1672.07" CDS 54..2762 /gene="utp21" /locus_tag="SPOM_SPCC1672.07" /codon_start=1 /product="U3 snoRNP-associated protein Utp21" /protein_id="NP_587878.1" /db_xref="GeneID:2539299" /db_xref="PomBase:SPCC1672.07" /translation="MPFAEKKRRTYENAVKPLRKSRIYAPFRSIGHVSNAVPFDIEAR GTHFLVTTSVGNTFQTYDCEKLNLLFVGKQLDKEITCLKSFKDFMLVAAGSKIFAYKR GKIIWDIDVEQEHGTVTHLDAFGEWIIACTSSRHVYVWKHASKYSVPELHTTFLPNTN ADITSLLHPSTYLNKILLGFSDGALQIWNLRVSKRVHEFQEFFGDGITSLTQAPVLDV LAVGTISGRIVIFNLKNGSILMEFKQDGQVLSCSFRTDGTPILASSNPIGDLSFWDLS KRRIQNVTYNAHFGSLPKIQFLNGQPILVTAGPDNSLKEWIFDSMDGAPRILRSRNGH YEPPSFVKFYGKSVHFLISAATDRSLRAVSLYQDSQSTELSQGSVISKAKKLNVRPEE LKLPEITALSSSNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLPTSDGTSVRSV CVSCCGNFGLIGSSKGVVDVYNMQSGIKRKSFGQSSLSGKPVTAVMLDNVNRILVTAS LDGILKFWDFNKGNLIDSLDVGSSITHAIYQHSSDLVAVACDDFGIRIVDVQTRKIVR ELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT GDYLATTHVDQVGISLWTNLSMFKHVSTKALRLDDVVEVSAPSVSGEKGISVVEAALN VESNAEDEEDISYRTMDQLDPNLQTLSKLPRTQWQTLINLEAIKARNAPKEVPKVPEK APFFLPSLKDQSEATVPKQPIATEISKPTAVASIKVSGTEFSTLLHGNDDDAFFEYLK SLGPAKIDLEIRSLDAYPPYEEFILFINIMTRRLSKRRDFELVQACMSVFTKSHEDVL LMHDTPEDTVPVFESLKAWESVHKEENQRLLDLVGYCSGILSFMRT" ORIGIN 1 aagagccatc ctttgccatt ttacgtgcta tttgtgttct ttcctgtgat aaaatgccat 61 ttgcagagaa gaaacggagg acttatgaaa atgcggtgaa gcctctaaga aaatctagga 121 tctatgctcc ctttagatcc atcggtcacg tttccaatgc agtacctttc gacattgagg 181 ctcgtggaac ccattttttg gtaacaacgt cggtgggaaa cacatttcaa acatatgact 241 gcgaaaagtt gaatttgctt ttcgttggca agcaattaga caaggaaatt acttgtttaa 301 aatcctttaa agatttcatg cttgtagctg ccggatcaaa aatttttgca tataaacgtg 361 gtaaaataat atgggacatt gatgtggagc aagaacatgg aacagtcact catttagatg 421 cttttggtga gtggattatt gcttgtacat cttctcgtca tgtttatgta tggaaacacg 481 cttctaaata tagtgttcct gagcttcata ctacatttct tcctaatacc aatgcagata 541 tcactagttt actacatcca agcacttatt tgaacaaaat actgctagga ttctcagatg 601 gagcattaca gatttggaat ttgcgtgttt ctaaacgtgt acatgaattt caggaatttt 661 ttggtgatgg aatcactagt ttaacacaag cccctgtcct cgatgtttta gctgttggta 721 ctattagtgg tcgtattgta atctttaatc ttaaaaatgg ttcaatactc atggaattca 781 aacaagatgg ccaagttctt tcatgttcat tccgtactga tgggacacca atattagctt 841 cttccaaccc cattggtgac ctttcttttt gggatctttc aaagcgaaga attcaaaatg 901 ttacatataa tgctcatttt gggtcacttc caaagataca gtttcttaac gggcagccca 961 tattagtaac tgctggtcca gataactctc ttaaagaatg gatctttgat tcaatggatg 1021 gtgctcctag aatcctacgt tctcgtaatg gtcattacga gccaccttca tttgttaagt 1081 tttatgggaa aagtgtgcac ttcttgattt cggctgcaac tgatcggtca ttaagagcag 1141 ttagtttata ccaagactca caatcaaccg aactatctca aggctctgtt atttcaaagg 1201 caaagaaact taatgttcgc ccggaagaat taaaattacc cgagataact gccctatctt 1261 cttcaaatac tcgtgaaaaa tattgggata atgttctaac tgcccacaaa aatgatagtt 1321 ctgctcgcac ttggaactgg aaatctaaaa cattgggtca acacgtttta ccaactagtg 1381 acggtacgtc agtacggtct gtttgtgtaa gttgttgtgg taattttggt ttgattggta 1441 gctctaaagg cgttgtagat gtttataaca tgcaaagtgg tatcaaaagg aaatcatttg 1501 gacaaagctc tctatcaggc aaaccagtca ctgcagttat gttggacaat gtaaatcgca 1561 ttcttgtaac tgcatcgctg gacgggattt taaaattttg ggatttcaac aaaggaaact 1621 taatagattc attagacgtt ggaagttcca ttactcatgc gatttatcaa cattcatcag 1681 acctcgttgc tgtcgcttgt gacgatttcg gcattcgcat tgttgacgta caaacaagga 1741 agattgttcg tgaattatgg ggtcattcga atcgtctcac cagctttgat ttttccgata 1801 ctggcagatg gcttgttact gcatctttag atggaacaat tcgcacatgg gatctaccca 1861 ctggtcactt aattgattca atttctacac ccagtgtatg cacaagtttg acatttgcac 1921 caactggtga ttatctggca acaacgcatg tggaccaggt gggaattagc ttatggacga 1981 acctttcaat gttcaaacac gtttctacaa aggcacttcg ccttgatgat gttgttgaag 2041 tttcagctcc ttccgtatct ggtgaaaaag gaatatctgt ggtagaggcc gctctaaatg 2101 tcgagtctaa tgctgaagat gaagaagata tatcatatcg gacgatggat caactcgatc 2161 ccaacttgca aactcttagc aaactcccac gcactcaatg gcaaactttg attaatctag 2221 aagcaattaa ggctcgtaat gctcccaagg aagtacccaa agtacccgag aaagcaccgt 2281 ttttcttgcc ttccttaaag gatcaatcag aagcgacagt gcccaagcag cctatagcaa 2341 ctgagatttc aaagccgact gctgttgcct ccataaaagt atccggcacc gagttttcta 2401 ctttattaca tggaaacgat gatgatgcgt ttttcgagta cttaaaatcc ctcgggccag 2461 caaagatcga tttggagatt cggtcattgg atgcataccc gccttatgaa gaatttatat 2521 tatttatcaa tattatgaca cgaaggcttt ctaaaagaag agatttcgag ctcgtccaag 2581 cttgtatgtc cgtctttacg aagtcacacg aggacgtatt actaatgcat gatactcccg 2641 aagatacggt acctgttttt gaaagtttga aggcatggga aagtgttcat aaagaagaaa 2701 atcagcgtct tttagatttg gtgggctact gttcgggtat tttgagcttt atgcgtactt 2761 aatacatctg cgtaaaaaag tggtaaatgt acaaaacagg agcagaaaaa aaagcaaatt 2821 aggatgggaa attgttaaag ttttagggga tatgtcattg cttacattgg ctgtgttcaa 2881 aaggttttat ttcattagta atttttgggt aaaaaaataa atatctttta atggtaaatg 2941 acaaaaattg aag //