Dbfetch
LOCUS NM_001020080 4487 bp mRNA linear PLN 16-AUG-2024 DEFINITION Schizosaccharomyces pombe tRNA nucleotidyltransferase (cca1), mRNA. ACCESSION NM_001020080 VERSION NM_001020080.4 DBLINK BioProject: PRJNA127 BioSample: SAMEA3138176 KEYWORDS RefSeq. SOURCE Schizosaccharomyces pombe (fission yeast) ORGANISM Schizosaccharomyces pombe Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces. REFERENCE 1 (bases 1 to 4487) AUTHORS Schafer,B., Hansen,M. and Lang,B.F. TITLE Transcription and RNA-processing in fission yeast mitochondria JOURNAL RNA 11 (5), 785-795 (2005) PUBMED 15811919 REFERENCE 2 (bases 1 to 4487) AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 3 AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R., Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D., Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T., Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P., Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D., Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S., Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M., Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S., Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S., Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S., Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M., Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G., Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J., Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I., Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D., Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H., Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H., Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S., Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z., Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C., Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L., Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A., Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L., Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V., Ussery,D., Barrell,B.G. and Nurse,P. TITLE The genome sequence of Schizosaccharomyces pombe JOURNAL Nature 415 (6874), 871-880 (2002) PUBMED 11859360 REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to Cerutti L]] REFERENCE 4 (bases 1 to 4487) AUTHORS Trinkl,H., Lang,B.F. and Wolf,K. TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in the mitochondrial genome of the fission yeast Schizosaccharomyces pombe JOURNAL Nucleic Acids Res 17 (16), 6730 (1989) PUBMED 2780299 REFERENCE 5 (bases 1 to 4487) AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W. TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces pombe. Sequence of the large-subunit ribosomal RNA gene, comparison of potential secondary structure in fungal mitochondrial large-subunit rRNAs and evolutionary considerations JOURNAL Eur J Biochem 169 (3), 527-537 (1987) PUBMED 2446871 REFERENCE 6 (bases 1 to 4487) AUTHORS Lang,B.F., Ahne,F. and Bonen,L. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene JOURNAL J Mol Biol 184 (3), 353-366 (1985) PUBMED 4046021 REFERENCE 7 (bases 1 to 4487) AUTHORS Lang,B.F. TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans JOURNAL EMBO J 3 (9), 2129-2136 (1984) PUBMED 6092057 REFERENCE 8 (bases 1 to 4487) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 9 AUTHORS Wood,V. and Rutherford,K. CONSRTM PomBase TITLE Direct Submission JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins building, Tennis Court Rd, Cambridge, United Kingdom REFERENCE 10 AUTHORS Wood,V. CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium TITLE Direct Submission JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome sequencing project, Sanger Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_003424). On Jun 21, 2024 this sequence version replaced NM_001020080.3. FEATURES Location/Qualifiers source 1..4487 /organism="Schizosaccharomyces pombe" /mol_type="mRNA" /strain="972h-" /db_xref="taxon:4896" /chromosome="I" gene 1..4487 /gene="cca1" /locus_tag="SPOM_SPAC1093.04C" /db_xref="GeneID:2542977" /db_xref="PomBase:SPAC1093.04c" CDS 238..1740 /gene="cca1" /locus_tag="SPOM_SPAC1093.04C" /codon_start=1 /product="tRNA nucleotidyltransferase" /protein_id="NP_594651.2" /db_xref="GeneID:2542977" /db_xref="PomBase:SPAC1093.04c" /translation="MASSSSILELNETEKELSDIFLNVSKKIGQMDRKEPEVRFAGGW VRDKLLRIESHDIDVAIDCMSGFEFAQHLQSYLAQQHPDWETKVIKIDANPLKSKHLE TATARIMGMDIDIVNLRHHDYTNSNSSNKLVFGTPLEDALRRDATINALFYNLKSKTV EDFTGKGLVDLSNKIIRTPLVADETFGDDPLRAVRCIRFATKYDFNIHEETIKGLKNP ELHERLRSSISRERIGVEVDKMLKHCNTNRALKIIHSLGMFACIFGPLEIHTKKLQSK NIESLSLIPYAIDLFGYLQKKDVSIKNLSSSSKYIFWLAIATLPWYNWSILEKSKIKI LPPILIRDSLKYSKPIMSQVENFFVHYPLIMSKINVLEKEGKLTRLGCGRLVRELGPH WRDIIDWAFFMNTLISNSDIQRLNKDEEVTWFHVLVKHIEEYGMEEAYNIQPIINGNE ITRILGIRPGPHLRKMLDDSIEWRIQNPESTKEDYIAIMLEKGTSAVVDS" ORIGIN 1 aaggcacttc acctcgtatg cattgacaac ctattgacat gttctatctt ctttctctgc 61 ttgattgctt agtataaaag aagttttaaa agatttggct ttttccatat ttacatacgt 121 ttctcacttt agtgaatgtg catctccgct gtgagaaatc ggatattaaa aaaagttata 181 cttactaagt tttctggtcc cgacactcgt attttgagaa aatatcattc atctccaatg 241 gctagcagct cttctatttt ggagctgaac gaaaccgaaa aggagttaag tgatatattc 301 ctcaatgtct caaagaaaat tggtcaaatg gatcggaagg agcctgaagt tagatttgcc 361 ggtggttggg ttcgtgataa attattaaga atcgaaagtc acgatataga tgtagctatt 421 gattgtatgt ccggtttcga atttgcacag catctccaaa gttatttggc tcaacaacac 481 cctgactggg agacaaaagt tatcaaaatt gatgcgaatc ctctaaagtc aaagcacctt 541 gaaacagcca ctgcaagaat tatgggaatg gatattgaca ttgttaattt aagacatcat 601 gactacacta attcaaattc gtctaacaaa ctcgttttcg gaacaccttt agaagatgct 661 ttgagacggg acgcaacaat caatgcttta ttttacaact tgaagagtaa gactgtggaa 721 gactttacgg gaaaaggatt ggttgactta agtaataaaa ttataaggac accacttgta 781 gccgatgaga cgtttggtga cgacccttta cgagcagttc gatgtattcg ttttgctacg 841 aaatatgatt tcaacattca cgaagagact attaaggggt tgaaaaatcc cgaacttcat 901 gagcgattac ggtcatctat aagcagagag cgcattggtg ttgaagttga taaaatgtta 961 aaacattgta acaccaaccg tgcattaaaa attatccata gccttggcat gtttgcatgc 1021 atctttgggc cgctagaaat ccatactaaa aaattacaat cgaaaaacat tgaatcactt 1081 agcctaattc cttatgcaat tgatttgttc ggatatttac aaaaaaagga tgtcagtatt 1141 aaaaatctat cttcatcttc taaatatatt ttctggttag caattgctac gcttccatgg 1201 tataactgga gtatcctgga gaaatccaaa attaaaatac ttccacctat tttgatacgt 1261 gacagcttaa aatatagcaa accaataatg tctcaagttg aaaatttctt tgttcattat 1321 cctttaatta tgtcaaaaat aaatgttctc gaaaaagaag gcaagcttac taggttaggt 1381 tgtggaagac tggtaagaga acttggtcct cactggagag atattattga ttgggctttt 1441 tttatgaaca cgcttattag taattccgat attcagcgat tgaacaagga tgaggaagtt 1501 acttggtttc acgttctggt taaacatatt gaggaatacg gcatggaaga agcatacaat 1561 attcagccaa tcataaatgg aaatgaaata actaggattt tgggaatacg tccgggacca 1621 catttgcgta aaatgttaga tgattctatt gaatggagaa ttcaaaatcc cgaatcaact 1681 aaagaagact atatagcaat catgctagaa aaaggtactt ccgctgtagt tgactcataa 1741 attcgattag ttaaagcata aaggaaaaaa aattaaacta aagggatcta aagaattata 1801 ttttcataac acgaaaattt aataaatacg acgtttcgag ttaaaataaa agccacaaaa 1861 aaaaatcggt tcaagttgac ttatagtcag taatccaagc gctatagaac gctacctttt 1921 ccgaccgatc agactttaaa gttggattct ctgaaatagc cgagttgaag tagtcattat 1981 aagtattaag ttctttttcc ttgatttctt taattttatc cggagaataa tcagcataat 2041 tattatacat tgcccgatcg tgtttgctta ataaagtata attatccgcc aaccccgata 2101 tattgttata ctgaaaatgt attttataaa cattaatatc agtattcgga attttgaaat 2161 caggctgttt ttgatctctt ggttgtactt tattcgacac cggaatttga tgcagtcttt 2221 ttcgtataaa cttatggact ggtctttcct cattattaaa tagccattta tacaaggaaa 2281 cccgtctaaa cttatcatca tcttcatcct catcttcatt ttcttcttct gcggaagtct 2341 taaacatatc gcgtggttga tttctgcggg gaataaacgg atttaaagac ggggcttcaa 2401 tgccgaaacc attgtatgat aaaggtaaaa atgactttcg cagaagcggg atgagactta 2461 acggagcaaa atttaaggtc gaaatcagat tgggcaacag aacttcagaa aacgaagaaa 2521 tagaattagg agtataaaca ttatcaaaat agtttgcagg aaacttaatc cccttccttt 2581 gaatgctatc gcagtaagca tttttgcatc gtaattcttg attcacataa actggtgtcc 2641 accagtaccg gtaatctcgg cgaaccaatt gcccattttt gaacttttcg gtgagcgctt 2701 gtaaccgttt ttcaccaaaa accacaattt taccatgaac tgtaaagttt ccaaggaaca 2761 aactgatggc ctcttgacgt tgaaaatcga caaaggaatt actataaaat cttttgacac 2821 tttcgattaa gtctcttgaa gtgctcgacc actgattgtt ctttcgataa gtatcaagcg 2881 tgttaactaa taaggagcca ccgtattgaa gagcaattgc atcgccatgg ccatgataca 2941 tctcagcaag caatctgaca gcatcggact cgtagtcaag ctgtggagaa tctaaaacac 3001 ccaaagctct taattgagct gctaaaacac attttccaat cacaaattgc gcagcatttg 3061 tacgatccaa gcagtcgaca cagtttgtac gaacaactcc agtttgaaaa gtaccaggga 3121 aaaatctatc agcagtgcag aagaagcctg tcttttttac aatatcacta gccatttgtt 3181 ctagagtttt agtcacagga acttttctgt cgttatgtta atacgaatat aaccgttaaa 3241 aacatacttt tttgaagcag cggacatatc ccacgcaata tattgaatct tctgggaatc 3301 tttcaaaaat tgattaagat attgtatagc agattcaaat tcatccaata ataaggactc 3361 tcttttgact ttctctgatg atttaacaag atttaaaaca atacatggaa taccgtaatg 3421 accgaataaa cgatcaaaat gtaaggcggt tgaagcataa aaaggatcgt gaaaatcaat 3481 acctattggt ggctttggcg ttatgttgct aaattcttga gaccagcgaa gcggaatgct 3541 tcctcggtgt tgtacgtagc tagtataaca aggaatccca ggagtggttg aagatattgg 3601 aaaggaagat gctgagccgt cgaacacaat ttgctctgtc tcaacttcat tagcgacata 3661 tccatcatct cgaattcctc ttcttaagaa gcgagcaccg gcaaaatgcc gcgaccttcg 3721 tgcaattaaa gtgacaataa taggtttgcc ataaacagaa agttcttata agttagtata 3781 tataaaaaga gaaataggag taaatgaaaa aatttcaacg tactagcttg atcaacaaaa 3841 ccatggataa gagggataca ccaaggagaa tcaattccta cagagtccaa aattgggcgc 3901 agcatattcc aattccaaac aaacatatct ctaacctgat gctgaggaat tggatgagta 3961 aatccatatt gtattgtttg tgataaatca taactgtagc taaaataaaa ggttctagca 4021 agatcaactt tttcaatgct tgacatacac ctataagaat tagaatctta aactcatatt 4081 ttttgaagac caactggaat actggaattt cgacacttac tttcgttcaa cactggtatt 4141 atgtcttcga cttggattca gttcaatgaa ttgagtctta tcaacatggt agacattatg 4201 tcctccgatt acagcaacaa cttttctttc tgtacacaaa tacaaatagt acccagctgt 4261 aaatcgaaaa aggcccaaga ttgcatatgc cttggtaaca agtattagtt ttccatcggc 4321 gctctcattt tctaattttt ctaaatacaa ttgaagcttc tggcgaaaaa gtatttttgc 4381 ggcctcttca atacttatag aaagctcatc ttcagattga gtaatcttta aaatacgaaa 4441 aattgttgca gtagcgtttt cgctcacaat atagtagcac tcaaaag //