Dbfetch
ID HLA00007; SV 6; standard; DNA; HUM; 3517 BP. XX AC HLA00007; XX SV HLA00007.6 XX DT 21-NOV-1987 (Rel. 1.00.0, Created, Version 1) DT 14-JUL-2016 (Rel. 3.25.0, Last Updated, Version 6) XX DE HLA-A*02:02:01:01, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-A; Allele; HLA-A*02:02:01:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.64.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX RN [1] RP 1-3517 RX PUBMED; 3497874. RA Mattson DH, Handy DE, Bradley DA, Coligan JE, Cowan EP, Biddison WE; RT "DNA sequences of the genes that encode the CTL-defined HLA-A2 variants M7 RT and DK1."; RL Immunogenetics 26:190-192(1987). XX RN [2] RP 1-3517 RX PUBMED; 23246585. RA Lind C, Ferriola D, Mackiewicz K, Sasson A, Monos D; RT "Filling the gaps - The generation of full genomic sequences for 15 common RT and well-documented HLA class I alleles using next-generation sequencing RT technology."; RL Human Immunology 74:325-329(2013). XX RN [3] RP 1-3517 RX PUBMED; 28547825. RA Albrecht V, Zweiniger C, Surendranath V, Lang K, Schofl G, Dahl A, Winkler RA S, Lange V, Bohme I, Schmidt AH; RT "Dual redundant sequecing strategy: Full-length gene characterisation of RT 1056 novel and confirmatory HLA alleles."; RL HLA 90:79-87(2017). XX DR EMBL; AH003586; AH003586.2. DR EMBL; HG965148; HG965148.1. DR EMBL; JQ771778; JQ771778.1. DR EMBL; LN877336; LN877336.2. DR EMBL; LN994621; LN994621.2. DR EMBL; LN999592; LN999592.1. DR EMBL; M17566; M17566.1. DR EMBL; M17568; M17568.1. DR EMBL; M17689; M17689.1. DR EMBL; M17690; M17690.1. DR EMBL; OZ257622; OZ257622.1. DR EMBL; X94566; X94566.1. XX FH Key Location/Qualifiers FH FT source 1..3517 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="African, African descent, Undefined" FT /cell_line="09-4367" FT /cell_line="211908" FT /cell_line="951314" FT /cell_line="AN300120" FT /cell_line="DKMS-LSL-A-720" FT /cell_line="DKMS-LSL-A-903" FT /cell_line="M7" FT CDS join(301..373,504..773,1015..1290,1891..2166,2266..2382, FT 2821..2853,2996..3043,3213..3217) FT /codon_start=1 FT /gene="HLA-A" FT /allele="HLA-A*02:02:01:01" FT /product="MHC Class I HLA-A*02:02:01:01 sequence" FT /translation="MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPR FT FIAVGYVDDTQFVRFDSDAASRRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGT FT LRGYYNQSEAGSHTLQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMA FT AQTTKHKWEAAHVAEQWRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHE FT ATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRY FT TCHVQHEGLPKPLTLRWEPSSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRK FT GGSYSQAASSDSAQGSDVSLTACKV" FT UTR 1..300 FT exon 301..373 FT /number="1" FT intron 374..503 FT /number="1" FT exon 504..773 FT /number="2" FT intron 774..1014 FT /number="2" FT exon 1015..1290 FT /number="3" FT intron 1291..1890 FT /number="3" FT exon 1891..2166 FT /number="4" FT intron 2167..2265 FT /number="4" FT exon 2266..2382 FT /number="5" FT intron 2383..2820 FT /number="5" FT exon 2821..2853 FT /number="6" FT intron 2854..2995 FT /number="6" FT exon 2996..3043 FT /number="7" FT intron 3044..3212 FT /number="7" FT exon 3213..3217 FT /number="8" FT UTR 3218..3517 SQ Sequence 3517 BP; 675 A; 1015 C; 1067 G; 760 T; 0 other; cagaagcaga ggggtcaggg cgaagtccca gggccccagg cgtggctctc agggtctcag 60 gccccgaagg cggtgtatgg attggggagt cccagccttg gggattcccc aactccgcag 120 tttcttttct ccctctccca acctatgtag ggtccttctt cctggatact cacgacgcgg 180 acccagttct cactcccatt gggtgtcggg tttccagaga agccaatcag tgtcgtcgcg 240 gtcgcggttc taaagtccgc acgcacccac cgggactcag attctcccca gacgccgagg 300 atggccgtca tggcgccccg aaccctcgtc ctgctactct cgggggctct ggccctgacc 360 cagacctggg cgggtgagtg cggggtcggg agggaaacgg cctctgtggg gagaagcaac 420 gggcccgcct ggcgggggcg caggacccgg gaagccgcgc cgggaggagg gtcgggcggg 480 tctcagccac tcctcgtccc caggctctca ctccatgagg tatttcttca catccgtgtc 540 ccggcccggc cgcggggagc cccgcttcat cgcagtgggc tacgtggacg acacgcagtt 600 cgtgcggttc gacagcgacg ccgcgagccg gaggatggag ccgcgggcgc cgtggataga 660 gcaggagggt ccggagtatt gggacgggga gacacggaaa gtgaaggccc actcacagac 720 tcaccgagtg gacctgggga ccctgcgcgg ctactacaac cagagcgagg ccggtgagtg 780 accccggccc ggggcgcagg tcacgacctc tcatccccca cggacgggcc aggtcgccca 840 cagtctccgg gtccgagatc cgccccgaag ccgcgggacc ccgagaccct tgccccggga 900 gaggcccagg cgcctttacc cggtttcatt ttcagtttag gccaaaaatc cccccaggtt 960 ggtcggggcg gggcggggct cgggggaccg ggctgaccgc ggggtccggg ccaggttctc 1020 acaccctcca gaggatgtat ggctgcgacg tggggtcgga ctggcgcttc ctgcgcgggt 1080 accaccagta cgcctacgac ggcaaggatt acatcgccct gaaagaggac ctgcgctctt 1140 ggaccgcggc ggacatggca gctcagacca ccaagcacaa gtgggaggcg gcccatgtgg 1200 cggagcagtg gagagcctac ctggagggca cgtgcgtgga gtggctccgc agatacctgg 1260 agaacgggaa ggagacgctg cagcgcacgg gtaccagggg ccacggggcg cctccctgat 1320 cgcctgtaga tctcccgggc tggcctccca caaggagggg agacaattgg gaccaacact 1380 agaatatcgc cctccctctg gtcctgaggg agaggaatcc tcctgggttt ccagatcctg 1440 taccagagag tgactctgag gttccgccct gctctctgac acaattaagg gataaaatct 1500 ctgaaggaat gacgggaaga cgatccctcg aatactgatg agtggttccc tttgacacac 1560 acaggcagca gccttgggcc cgtgactttt cctctcaggc cttgttctct gcttcacact 1620 caatgtgtgt gggggtctga gtccagcact tctgagtccc tcagcctcca ctcaggtcag 1680 gaccagaagt cgctgttccc tcttcaggga ctagaatttt ccacggaata ggagattatc 1740 ccaggtgcct gtgtccaggc tggtgtctgg gttctgtgct cccttcccca tcccaggtgt 1800 cctgtccatt ctcaagatag ccacatgtgt gctggaggag tgtcccatga cagatgcaaa 1860 atgcctgaat gatctgactc ttcctgacag acgcccccaa aacgcatatg actcaccacg 1920 ctgtctctga ccatgaagcc accctgaggt gctgggccct gagcttctac cctgcggaga 1980 tcacactgac ctggcagcgg gatggggagg accagaccca ggacacggag ctcgtggaga 2040 ccaggcctgc aggggatgga accttccaga agtgggcggc tgtggtggtg ccttctggac 2100 aggagcagag atacacctgc catgtgcagc atgagggttt gcccaagccc ctcaccctga 2160 gatggggtaa ggagggagac gggggtgtca tgtcttttag ggaaagcagg agcctctctg 2220 acctttagca gggtcagggc ccctcacctt cccctctttt cccagagccg tcttcccagc 2280 ccaccatccc catcgtgggc atcattgctg gcctggttct ctttggagct gtgatcactg 2340 gagctgtggt cgctgctgtg atgtggagga ggaagagctc aggtggggaa ggggtgaagg 2400 gtgggtctga gatttcttgt ctcactgagg gttccaagac ccaggtagaa gtgtgccctg 2460 cctcgttact gggaagcacc acccacaatt atgggcctac ccagcctggg ccctgtgtgc 2520 cagcacttac tcttttgtaa agcacctgtt aaaatgaagg acagatttat caccttgatt 2580 acagcggtga tgggacctga tcccagcagt cacaagtcac aggggaaggt ccctgaggac 2640 cttcaggagg gcggttggtc caggacccac acctgctttc ttcatgtttc ctgatcccgc 2700 cctgggtctg cagtcacaca tttctggaaa cttctctgag gtccaagact tggaggttcc 2760 tctaggacct taaggccctg actcctttct ggtatctcac aggacatttt cttcccacag 2820 atagaaaagg agggagctac tctcaggctg caagtaagta tgaaggaggc tgatgcctga 2880 ggtccttggg atattgtgtt tgggagccca tgggggagct cacccacccc acaattcctc 2940 ctctagccac atcttctgtg ggatctgacc aggttctgtt tttgttctac cccaggcagt 3000 gacagtgccc agggctctga tgtgtctctc acagcttgta aaggtgagag cctggagggc 3060 ctgatgtgtg ttgggtgttg ggcggaacag tggacacagc tgtgctatgg ggtttctttc 3120 cattggatgt attgagcatg cgatgggctg tttaaagtgt gacccctcac tgtgacagat 3180 acgaatttgt tcatgaatat ttttttctat agtgtgagac agctgccttg tgtgggactg 3240 agaggcaaga gttgttcctg cccttccctt tgtgacttga agaaccctga ctttgtttct 3300 gcaaaggcac ctgcatgtgt ctgtgttcgt gtaggcataa tgtgaggagg tggggagacc 3360 accccacccc catgtccacc atgaccctct tcccacgctg acctgtgctc cctccccaat 3420 catctttcct gttccagaga ggtggggctg aggtgtctcc atctctgtct caacttcatg 3480 gtgcactgag ctgtaacttc ttccttccct attaaaa 3517 //