ID   KR025151; SV 1; circular; genomic DNA; STD; HUM; 16569 BP.
XX
AC   KR025151;
XX
DT   20-MAY-2015 (Rel. 124, Created)
DT   23-JUN-2016 (Rel. 129, Last updated, Version 2)
XX
DE   Homo sapiens isolate Batek mitochondrion, complete genome.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OG   Mitochondrion
XX
RN   [1]
RP   1-16569
RA   Endicott K.E., Schroer K., Kistler L., Perry G.H., Dominy N.J.;
RT   "Batek human hair sample donated 1976, Malaysia";
RL   Unpublished.
XX
RN   [2]
RP   1-16569
RA   Endicott K.E., Schroer K., Kistler L., Perry G.H., Dominy N.J.;
RT   ;
RL   Submitted (30-MAR-2015) to the INSDC.
RL   Anthropology, The Pennsylvania State University, 516 Carpenter Building,
RL   University Park, PA 16802, USA
XX
DR   MD5; 193f31a67fb58427d611c8dc2e8b2933.
DR   Ensembl-Gn; ENSG00000198695; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198712; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198763; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198786; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198804; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198886; homo_sapiens.
DR   Ensembl-Gn; ENSG00000198938; homo_sapiens.
DR   Ensembl-Gn; ENSG00000212907; homo_sapiens.
DR   Ensembl-Gn; ENSG00000228253; homo_sapiens.
DR   Ensembl-Tr; ENST00000361335; homo_sapiens.
DR   Ensembl-Tr; ENST00000361381; homo_sapiens.
DR   Ensembl-Tr; ENST00000361453; homo_sapiens.
DR   Ensembl-Tr; ENST00000361567; homo_sapiens.
DR   Ensembl-Tr; ENST00000361624; homo_sapiens.
DR   Ensembl-Tr; ENST00000361681; homo_sapiens.
DR   Ensembl-Tr; ENST00000361739; homo_sapiens.
DR   Ensembl-Tr; ENST00000361851; homo_sapiens.
DR   Ensembl-Tr; ENST00000362079; homo_sapiens.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Burrowes-Wheeler Aligner v. 0.6.1-r104
CC   Assembly Name         :: Batek.mt
CC   Coverage              :: 300
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..16569
FT                   /organism="Homo sapiens"
FT                   /organelle="mitochondrion"
FT                   /isolate="Batek"
FT                   /mol_type="genomic DNA"
FT                   /country="Malaysia:Kelantan, upper Lebir River, Kuala
FT                   Gintah"
FT                   /lat_lon="5.02 N 102.42 E"
FT                   /collection_date="1976"
FT                   /sex="male"
FT                   /tissue_type="hair"
FT                   /note="Batek individual"
FT                   /db_xref="taxon:9606"
FT   tRNA            578..648
FT                   /product="tRNA-Phe"
FT   rRNA            649..1602
FT                   /product="12S ribosomal RNA"
FT   tRNA            1603..1671
FT                   /product="tRNA-Val"
FT   rRNA            1672..3229
FT                   /product="16S ribosomal RNA"
FT   tRNA            3230..3304
FT                   /product="tRNA-Leu"
FT   gene            3307..4262
FT                   /gene="ND1"
FT   CDS             3307..4262
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:4261..4262,aa:TERM)
FT                   /gene="ND1"
FT                   /product="NADH dehydrogenase subunit 1"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:Q85KU5"
FT                   /db_xref="InterPro:IPR001694"
FT                   /db_xref="InterPro:IPR018086"
FT                   /db_xref="UniProtKB/TrEMBL:Q85KU5"
FT                   /protein_id="AKG64569.1"
FT                   /translation="MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGL
FT                   LQPFADAMKLFTKEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLF
FT                   ILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLS
FT                   ALITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFAL
FT                   FFMAEYTNIIMMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFR
FT                   YDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT"
FT   tRNA            4263..4331
FT                   /product="tRNA-Ile"
FT   tRNA            complement(4329..4400)
FT                   /product="tRNA-Gln"
FT   tRNA            4402..4469
FT                   /product="tRNA-Met"
FT   gene            4470..5511
FT                   /gene="ND2"
FT   CDS             4470..5511
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:5511,aa:TERM)
FT                   /gene="ND2"
FT                   /product="NADH dehydrogenase subunit 2"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:Q7GXY9"
FT                   /db_xref="InterPro:IPR001750"
FT                   /db_xref="InterPro:IPR003917"
FT                   /db_xref="InterPro:IPR010933"
FT                   /db_xref="UniProtKB/TrEMBL:Q7GXY9"
FT                   /protein_id="AKG64570.1"
FT                   /translation="MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLT
FT                   KKMNPRSTEAAIKYFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAM
FT                   KLGMAPFHFWVPEVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIM
FT                   AGSWGGLNQTQLRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLN
FT                   SSTTTLLLSRTWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTI
FT                   MATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPIS
FT                   PFMLMIL"
FT   tRNA            5512..5579
FT                   /product="tRNA-Trp"
FT   tRNA            complement(5587..5655)
FT                   /product="tRNA-Ala"
FT   tRNA            complement(5657..5729)
FT                   /product="tRNA-Asn"
FT   tRNA            complement(5761..5826)
FT                   /product="tRNA-Cys"
FT   tRNA            complement(5826..5891)
FT                   /product="tRNA-Tyr"
FT   gene            5904..7445
FT                   /gene="COX1"
FT   CDS             5904..7445
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COX1"
FT                   /product="cytochrome c oxidase subunit I"
FT                   /db_xref="GOA:U5YWV7"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023615"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR033944"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:U5YWV7"
FT                   /protein_id="AKG64571.1"
FT                   /translation="MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPG
FT                   NLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWL
FT                   LPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAIN
FT                   FITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDP
FT                   AGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIG
FT                   FLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLW
FT                   ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPL
FT                   FSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGS
FT                   FISLTAVMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS"
FT   tRNA            complement(7445..7516)
FT                   /product="tRNA-Ser"
FT   tRNA            7518..7585
FT                   /product="tRNA-Asp"
FT   gene            7586..8269
FT                   /gene="COX2"
FT   CDS             7586..8269
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COX2"
FT                   /product="cytochrome c oxidase subunit II"
FT                   /db_xref="GOA:U5Z487"
FT                   /db_xref="InterPro:IPR001505"
FT                   /db_xref="InterPro:IPR002429"
FT                   /db_xref="InterPro:IPR008972"
FT                   /db_xref="InterPro:IPR011759"
FT                   /db_xref="InterPro:IPR014222"
FT                   /db_xref="InterPro:IPR034210"
FT                   /db_xref="InterPro:IPR036257"
FT                   /db_xref="UniProtKB/TrEMBL:U5Z487"
FT                   /protein_id="AKG64572.1"
FT                   /translation="MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLT
FT                   LTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEVNDPSLTIKSIGHQW
FT                   YWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVLHSW
FT                   AVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKIFEMG
FT                   PVFTL"
FT   tRNA            8295..8364
FT                   /product="tRNA-Lys"
FT   gene            8366..8572
FT                   /gene="ATP8"
FT   CDS             8366..8572
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="ATP8"
FT                   /product="ATP synthase F0 subunit 8"
FT                   /db_xref="GOA:U5YV54"
FT                   /db_xref="InterPro:IPR001421"
FT                   /db_xref="InterPro:IPR039017"
FT                   /db_xref="UniProtKB/TrEMBL:U5YV54"
FT                   /protein_id="AKG64573.1"
FT                   /translation="MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMK
FT                   NYNKPWEPKWTKICSLHSLPPQS"
FT   gene            8527..9207
FT                   /gene="ATP6"
FT   CDS             8527..9207
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="ATP6"
FT                   /product="ATP synthase F0 subunit 6"
FT                   /db_xref="GOA:Q9B185"
FT                   /db_xref="InterPro:IPR000568"
FT                   /db_xref="InterPro:IPR023011"
FT                   /db_xref="InterPro:IPR035908"
FT                   /db_xref="UniProtKB/TrEMBL:Q9B185"
FT                   /protein_id="AKG64574.1"
FT                   /translation="MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITT
FT                   QQWLIKLTSKQMMAMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAM
FT                   AIPLWAGAVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTAN
FT                   ITAGHLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYL
FT                   HDNT"
FT   gene            9207..9990
FT                   /gene="COX3"
FT   CDS             9207..9990
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:9990,aa:TERM)
FT                   /gene="COX3"
FT                   /product="cytochrome c oxidase subunit III"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:Q7GIM7"
FT                   /db_xref="InterPro:IPR000298"
FT                   /db_xref="InterPro:IPR013833"
FT                   /db_xref="InterPro:IPR024791"
FT                   /db_xref="InterPro:IPR033945"
FT                   /db_xref="InterPro:IPR035973"
FT                   /db_xref="UniProtKB/TrEMBL:Q7GIM7"
FT                   /protein_id="AKG64575.1"
FT                   /translation="MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLML
FT                   GLLTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHS
FT                   SLAPTPQLGGHWPPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQAL
FT                   LITILLGLYFTLLQASEYFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQ
FT                   LMFHFTSKHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS"
FT   tRNA            9991..10058
FT                   /product="tRNA-Gly"
FT   gene            10059..10404
FT                   /gene="ND3"
FT   CDS             10059..10404
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:10404,aa:TERM)
FT                   /gene="ND3"
FT                   /product="NADH dehydrogenase subunit 3"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:U5ZAD9"
FT                   /db_xref="InterPro:IPR000440"
FT                   /db_xref="InterPro:IPR038430"
FT                   /db_xref="UniProtKB/TrEMBL:U5ZAD9"
FT                   /protein_id="AKG64576.1"
FT                   /translation="MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMS
FT                   PARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSLAY
FT                   EWLQKGLDWAE"
FT   tRNA            10405..10469
FT                   /product="tRNA-Arg"
FT   gene            10470..10766
FT                   /gene="ND4L"
FT   CDS             10470..10766
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="ND4L"
FT                   /product="NADH dehydrogenase subunit 4L"
FT                   /db_xref="GOA:Q7GXZ4"
FT                   /db_xref="InterPro:IPR001133"
FT                   /db_xref="InterPro:IPR039428"
FT                   /db_xref="UniProtKB/TrEMBL:Q7GXZ4"
FT                   /protein_id="AKG64577.1"
FT                   /translation="MPLIYMNIMLAFTISLLGMLVYRSHLMSSLLCLEGMMLSLFIMAT
FT                   LMTLNTHSLLANIVPIAMLVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC"
FT   gene            10760..12137
FT                   /gene="ND4"
FT   CDS             10760..12137
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:12137,aa:TERM)
FT                   /gene="ND4"
FT                   /product="NADH dehydrogenase subunit 4"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:H9EC08"
FT                   /db_xref="InterPro:IPR000260"
FT                   /db_xref="InterPro:IPR001750"
FT                   /db_xref="InterPro:IPR003918"
FT                   /db_xref="InterPro:IPR010227"
FT                   /db_xref="UniProtKB/TrEMBL:H9EC08"
FT                   /protein_id="AKG64578.1"
FT                   /translation="MLKLIVPTIMLLPLTWLSKKHMIWINTTTHSLIISIIPLLFFNQI
FT                   NNNLFSCSPTFSSDPLTTPLLMLTTWLLPLTIMASQRHLSSEPLSRKKLYLSMLISLQI
FT                   SLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNAGTYFLFYTLVGSLPLLIA
FT                   LIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMVKMPLYGLHLWLPKAHVE
FT                   APIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLVLSLWGMIMTSSICLRQTD
FT                   LKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSLLFCLANSNYERTHSR
FT                   IMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTTFSWSNITLLLTGLN
FT                   MLVTALYSLYMFTTTQWGSLTHHINNMKPSFTRENTLMFMHLSPILLLSLNPDIITGFS
FT                   S"
FT   tRNA            12138..12206
FT                   /product="tRNA-His"
FT   tRNA            12207..12265
FT                   /product="tRNA-Ser"
FT   tRNA            12266..12336
FT                   /product="tRNA-Leu"
FT   gene            12337..14148
FT                   /gene="ND5"
FT   CDS             12337..14148
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="ND5"
FT                   /product="NADH dehydrogenase subunit 5"
FT                   /db_xref="GOA:U5ZC31"
FT                   /db_xref="InterPro:IPR001516"
FT                   /db_xref="InterPro:IPR001750"
FT                   /db_xref="InterPro:IPR003945"
FT                   /db_xref="InterPro:IPR010934"
FT                   /db_xref="UniProtKB/TrEMBL:U5ZC31"
FT                   /protein_id="AKG64579.1"
FT                   /translation="MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFI
FT                   ISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFS
FT                   LWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARAD
FT                   ANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAAAG
FT                   KSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTLCLG
FT                   AITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLF
FT                   MCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDHIIETA
FT                   NMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNINENNPTLLNPIKRLA
FT                   AGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLTNKLKMKSPL
FT                   CTFYFSNMLGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTISQHQISTSII
FT                   TSTQKGMIKLYFLSFFFPLILTLLLIT"
FT   gene            complement(14149..14673)
FT                   /gene="ND6"
FT   CDS             complement(14149..14673)
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="ND6"
FT                   /product="NADH dehydrogenase subunit 6"
FT                   /db_xref="GOA:U5Z977"
FT                   /db_xref="InterPro:IPR001457"
FT                   /db_xref="UniProtKB/TrEMBL:U5Z977"
FT                   /protein_id="AKG64580.1"
FT                   /translation="MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIILN
FT                   FGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGLVL
FT                   WVKEYDGVVVVVNFNSVGSWMIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTLFVG
FT                   VYIVIEIARGN"
FT   tRNA            complement(14674..14742)
FT                   /product="tRNA-Glu"
FT   gene            14747..15887
FT                   /gene="CYTB"
FT   CDS             14747..15887
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /transl_except=(pos:15887,aa:TERM)
FT                   /gene="CYTB"
FT                   /product="cytochrome b"
FT                   /note="TAA stop codon is completed by the addition of 3' A
FT                   residues to the mRNA"
FT                   /db_xref="GOA:Q6VJ80"
FT                   /db_xref="InterPro:IPR005797"
FT                   /db_xref="InterPro:IPR005798"
FT                   /db_xref="InterPro:IPR016174"
FT                   /db_xref="InterPro:IPR027387"
FT                   /db_xref="InterPro:IPR030689"
FT                   /db_xref="InterPro:IPR036150"
FT                   /db_xref="UniProtKB/TrEMBL:Q6VJ80"
FT                   /protein_id="AKG64581.1"
FT                   /translation="MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQI
FT                   TTGLFLAMHYSPDASTAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYY
FT                   GSFLYSETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQW
FT                   IWGGYSVDSPTLTRFFTFHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHP
FT                   YYTIKDALGLLLFLLSLMTLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTIL
FT                   RSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGG
FT                   QPVSYPFTIIGQVASVLYFTTILILMPTISLIENKMLKWA"
FT   tRNA            15888..15953
FT                   /product="tRNA-Thr"
FT   tRNA            complement(15955..16023)
FT                   /product="tRNA-Pro"
XX
SQ   Sequence 16569 BP; 5118 A; 5185 C; 2175 G; 4090 T; 1 other;