ID Z48630; SV 1; linear; genomic RNA; STD; VRL; 4082 BP. XX AC Z48630; XX DT 29-JUN-1995 (Rel. 44, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Cocksfoot Mottle Virus genes for polyprotein, RNA dependent RNA polymerase DE and coat protein XX KW coat protein; polyprotein; RNA dependent RNA polymerase; serine protease; KW Vpg. XX OS Cocksfoot mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4082 RX PUBMED; 7595389. RA Makinen K., Tamm T., Naess V., Truve E., Puurand U., Munthe T., Saarma M.; RT "Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence RT comparison with related viruses"; RL J. Gen. Virol. 76:2817-2825(1995). XX RN [3] RP 1-4082 RA Makinen K.; RT ; RL Submitted (07-MAR-1995) to the INSDC. RL Makinen K, Institute of Biotechnology, University of Helsinki, Karvaamokuja RL 3 FIN-00014 FINLAND. XX RN [4] RP 1-4082 RA Tamm T.; RT ; RL Submitted (07-MAR-1995) to the INSDC. RL Tiina Tamm, Institute of Chemical Physics and Biophysics, Akadeemia tee 23, RL EE 0026 Tallinn, ESTONIA XX RN [5] RP 1-4082 RX DOI; 10.1006/viro.1995.1118. RX PUBMED; 7886961. RA Makinen K., Naess V., Tamm T., Truve E., Aaspollu A., Saarma M.; RT "The putative replicase of the cocksfoot mottle sobemovirus is translated RT as a part of the polyprotein by -1 ribosomal frameshift"; RL Virology 207(2):566-571(1995). XX DR MD5; 88e73da90c8abb587df15044b3ce119b. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC3791421; 23830075. DR GOA; Q0PW25. DR InterPro; IPR000382; Peptidase_S39B_luteovirus. DR InterPro; IPR001795; RNA-dir_pol_luteovirus. DR InterPro; IPR007094; RNA-dir_pol_PSvirus. DR RFAM; RF01838; sobemo_FSE. DR UniProtKB/Swiss-Prot; Q0PW25; RDRP_CFMVN. XX FH Key Location/Qualifiers FH FT source 1..4082 FT /organism="Cocksfoot mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:40979" FT 5'UTR 1..69 FT CDS 70..396 FT /product="unknown" FT /db_xref="GOA:Q66011" FT /db_xref="UniProtKB/Swiss-Prot:Q66011" FT /citation=[1] FT /protein_id="CAA88560.1" FT /translation="MCEPPPGFITVQCYTSDDLLTGDSTIVKSIPVRSCFFRQGVEVVL FT FRCESNKHRWSKIRGPVSLTVHCDICEFRETVVIPSLPKGFKVSSDFSYSVTWNCCYSR FT GRTE" FT CDS 429..2135 FT /product="polyprotein" FT /function="VPg, serine protease, partly unknown functions" FT /db_xref="GOA:Q89504" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q89504" FT /citation=[1] FT /protein_id="CAA88561.1" FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLVSVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVWQEASELILGVSLEATRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPRNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYNISGITVKTSDREWTTAEALRVARYKPLGGGKAWGDSDDEDTQETA FT IRPLNYQRAGSLRGSPPLANLSSTRATSGVTKESSIPTACLSDPLESRVAGLEKLCAER FT FTEMFELLRQSSQNSKSSPGQAADQKQKSDRSSSKPAGLRESKRPPICNWQSLTSKPST FT RGPDPAPASAESPGVAKTSSQKSKRSRTRGKSTSKQVPASPSPKSGSATSK" FT mRNA 1603..3253 FT /product="RNA dependent RNA polymerase" FT /citation=[1] FT /citation=[5] FT CDS 3093..3857 FT /product="coat protein" FT /db_xref="GOA:Q66012" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q66012" FT /citation=[1] FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAA88562.1" FT /translation="MMVRKGAATKAPQQPKPKAQQQPGGRRRRRGRSMEPVSRPLNPPA FT AVGSTLKAGRGRTAGVSDWFDTGMITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAK FT AYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGG FT GDGSSLLHTSVKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVR FT SDFPVVTADQPGHLWLRSRILLKGSVSPSTNL" FT 3'UTR 3858..4082 XX SQ Sequence 4082 BP; 942 A; 1045 C; 1135 G; 960 T; 0 other; gataatagtg cgaagaaaga cacactgtta tcgttcccct cccgaatcag aggttgagaa 60 gtagcttaga tgtgcgaacc tccccctggt tttataaccg ttcagtgcta cacgagcgac 120 gatttgttga caggcgattc cacaattgtc aagtccattc ccgtccgctc gtgcttcttc 180 cgccaaggcg ttgaagttgt tctgttccgg tgtgagtcca acaaacatcg ctggtcgaag 240 atcagaggtc ctgtgagctt gacagttcac tgtgatatct gtgaattccg cgaaactgtt 300 gtgattccat ccctgcccaa aggcttcaaa gtatctagcg atttctctta cagtgtaacg 360 tggaattgct gttacagccg tggcaggaca gagtagcaca gaggttagtt ggttgagggt 420 gaccaagaat gggttgttct gttgttggaa actgcaagtc cgtgatgttg atgagcagga 480 tgagctggtc aaagctagct ctcctcgtat ccgtcgcaat ggcggcagcc atgacagact 540 ccccacccac tctgatatgt atggggatcc tagtgagcgt ggtgctcaac tggatcgtct 600 gcgcagtatg gcaagaagct tcagagctaa ttctgggcgt ttccttggaa gcgactcgtc 660 ctagtcccgc acgggtcata ggagagccgg tctttgaccc ccggtatggc tatgttgctc 720 ctgctatcta tgatggcaag tcgtttgacg tgatcctgcc tatttccgct ctgtcctccg 780 cttcaacaag gaaggagaca gtagagatgg cagttgagaa ctcacggcta cagcctctgg 840 aaagcagtca aacgccgaag tccctagtgg ctttgtactc gcaggatctg ctatcaggct 900 ggggttcccg gattaaaggc cctgatggcc aggaatacct cttgacagcc ctgcatgtgt 960 gggagaccaa catctctcac ctttgcaagg acggaaagaa ggtaccgata agcggatgcc 1020 caatcgttgc gagctctgct gattcggact tggactttgt ccttgtgtcc gtgccgagga 1080 acgcttggtc tgttctaggc gtcggtgtgg ctcgtttgga attgctcaaa cgccgaaccg 1140 tcgtaacagt ctatggaggc ctagactcaa agaccaccta ctgtgccact ggtgtggcgg 1200 agttggaaaa tcccttccgc atagtcacga aagtgacgac aacggggggg tggtcaggct 1260 ctccactcta ccacaaggac gcaatcgtcg ggttgcactt gggtgcgaga ccatctgcgg 1320 gggtcaatag agcgtgtaac gtggctatgg cctttagggt tgtgcggaaa tttgtcactg 1380 ttgaaaacag tgagttatat cccgaccaaa gcagtggccc cgcccgagag cttgatgctg 1440 agacatacac ggaaaggcta gagcaaggaa ttgcttttac tgagtacaat atatccggca 1500 ttacggtgaa aacctccgac cgagagtgga caacagctga ggcgttgcgt gtcgcaagat 1560 acaaaccctt gggtggagga aaagcatggg gtgatagtga tgacgaggac acccaagaaa 1620 ctgcaatccg gcctttaaac taccagcggg cgggctccct acggggcagt ccgcccttgg 1680 ccaacttatc gagtacgcgg gctacgtctg gcgtgacgaa ggaatcatca attccaacgg 1740 catgcctttc cgatccgctg gaaagtcgag ttgccggttt agagaagctg tgtgcagagc 1800 ggttcacaga gatgttcgag ctgctgagac agagttccca gaactcaaag agctcgcctg 1860 gccaagccgc ggatcaaaag cagaaatcgg atcgctcctc ttccaagccg gcaggtttga 1920 gagagtcgaa gcgcccgcca atctgcaatt ggcaatcact aacctccaag cccagtaccc 1980 gaggtccaga ccccgctcct gcttccgcag agagccctgg tgtcgcgaag acttcgtcgc 2040 agaaatcgaa aagatcgcgc actcggggga aatcaacctc aaagcaagtc ccggcgtccc 2100 cctcgccgaa atcggggtca gcaaccagca agtaattgat gtagcttggc ccttggtgtg 2160 tgaggctgtg gtggaaaggc tccatgcctt ggcatccgta gacccgcgcc agcacgattg 2220 gtctccagaa gaactcgtga aaagaggatt gtgcgatcca gtgagactct ttgtcaaaca 2280 ggaacctcat tctcgacaga agattgaaca aggtcgcttc cgacttatct cttctgtctc 2340 acttgtagat caactggtag aacgcatgct tttcggaccc cagaatacca cagagattgc 2400 tttgtggcat tcaaatccct ctaaacccgg gatgggtctg tcgaaagcta gccaagtcgc 2460 gctgttatgg gaggatttgg cgcgcaagca ccaaacccac ccgggtgcca tggctgatat 2520 ctcagggttt gactggtccg ttcaggattg ggaactctgg gctgacgtat ctatgaggat 2580 tgagctaggc tcgtttccag cgttgatggc gaaggcagct atatcgcggt tttactgctt 2640 gatgaacgct accttccaat taacgaatgg agagctctta gcccaggaac tgccaggact 2700 catgaagtcc gggtcgtact gtacctccag ctccaactcc cgcattcgct gccttatggc 2760 tgagctcatc ggctcgcctt ggtgtatcgc aatgggagat gattctgttg agggatgggt 2820 cgatgatgct cccaggaaat attcagcact aggccatctc tgtaaagagt atgaagcgtg 2880 tccagtgctc cccaacggag atttgaagga ggtgagcttt tgctcccatc tcatctctaa 2940 gggtcgagcg gaactggaga cgtggcccaa gtgtctgttt cgatatctca gtggaccaca 3000 tgatgtggaa agcttggaga tggagctaag ctcttctcgc cgctggggcc agatagtcag 3060 atacctccgc cggattggcc gggtctccgg aaatgatggt gaggaaagga gcagcaacga 3120 aagccccgca acaaccaaaa cccaaggctc agcagcagcc tgggggccgc cgcaggaggc 3180 gtggccggtc gatggagcca gtctctcgac ctttgaaccc tccagcagcg gttggttcca 3240 ccttgaaggc tggtagaggc aggaccgctg gtgtgagtga ctggtttgat accggcatga 3300 tcaccagtta cctaggtggt tttcagcgca cagctggaac taccgactcc caggtattca 3360 ttgtgtcacc cgctgcattg gaccgtgttg gaaccatagc taaggcgtat gcgttgtgga 3420 gacctaagca ttgggaaatc gtgtatctcc ccagatgttc tactcagaca gatgggtcga 3480 ttgaaatggg atttctctta gattatgcag atagcgtccc aaccaacacc cgaactatgg 3540 cctcctccac ctccttcaca acttcaaacg tgtggggagg tggggatggc agcagtttgt 3600 tgcacacgtc cgtgaagtcc atgggcaacg ctgttacgag cgctcttcct tgtgatgagt 3660 tctcgaacaa atggtttaag ttatcttgga gcactcctga ggaatcggag aacgctcatt 3720 taactgacac ctacgttccg gcgcgcttcg tggtgaggtc tgacttccca gtagtcacgg 3780 ctgaccaacc cggtcatctc tggctccggt ccaggatctt gctcaaggga tcagtttccc 3840 cttctacaaa tttgtagtca agtactgcag ggatgacaaa cctgtaaaac agtgtccgcg 3900 cttggtggag tcgcgttcgt ccacttggaa atctaactcc aaagctttgc ttgaagattg 3960 acggattggt atcatctccg taaggatacc gaccactggc tgggctcgtc acccctcctt 4020 tgtgtctcac aaacgacgaa tctgcgctcg gccaatgaca ggatcatggc cggggcaggt 4080 gc 4082 //