ID Y18368; SV 1; linear; genomic RNA; STD; VRL; 2759 BP. XX AC Y18368; XX DT 11-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Citrus tristeza virus defective RNA, strain T411 XX KW defective variant. XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RX PUBMED; 10092024. RA Ayllon M.A., Lopez C., Navas-Castillo J., Mawassi M., Dawson W.O., RA Guerri J., Flores R., Moreno P.; RT "New defective RNAs from citrus tristeza virus: evidence for a RT replicase-driven template switching mechanism in their generation."; RL J. Gen. Virol. 80:817-821(1999). XX RN [2] RP 1-2759 RA Moreno P.; RT ; RL Submitted (05-NOV-1998) to the INSDC. RL P. Moreno, Instituto Valenciano de Investigaciones Agrarias, Apartado RL Oficial 46113 Moncada, Valencia, SPAIN XX DR MD5; e29b3278b2f570347f5dcb8b8dc65ea9. DR EuropePMC; PMC2698906; 19473520. DR RFAM; RF00193; CTV_rep_sig. XX CC Related sequence Y16842 XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Citrus tristeza virus" FT /host="citrus" FT /strain="T411 from Spain" FT /mol_type="genomic RNA" FT /note=" CTV(T411) D-RNA 2.7 kb" FT /db_xref="taxon:12162" FT 5'UTR <1..108 FT CDS 109..183 FT /note="ORF" FT /db_xref="InterPro:IPR022108" FT /db_xref="UniProtKB/TrEMBL:Q9WIE1" FT /protein_id="CAA77146.1" FT /translation="MSKLGASFKSLTFAVRSDYIISRI" FT variation 183 FT /replace="g" FT /note="in full length T411" FT variation 188..190 FT /replace="cc" FT /note="in full length T411" FT variation 735 FT /replace="t" FT /note="in full length T411" FT variation 1114 FT /replace="c" FT /note="in full length T411" FT variation 1467 FT /replace="c" FT /note="in full length T411" FT misc_feature 1625..1628 FT /note="junction site" FT /experiment="experimental evidence, no additional details FT recorded" FT misc_feature 1817 FT /note="sgRNA ORF11" FT CDS 1856..2485 FT /note="ORF11" FT /db_xref="InterPro:IPR006893" FT /db_xref="UniProtKB/TrEMBL:Q9YJI6" FT /protein_id="CAA77147.1" FT /translation="MDDTSGQTFVSVNLSDESNTASTKVENVKSEADRLEFLRKMNPFI FT VDALVRKTNYQGARFRARIIGVCVDCGRKHDKALKTERKCKVNNTQSQNEVAHMLMHDP FT VKYLNKRKARAFSNAEMFAIELVLYTKERQLAVDLAAEREKTRLARRHPIRSPEETPEH FT YKFGMTAKAMLPDINAVDVGDNEETSSEYPVSLSVSGGVLREHHFI" XX SQ Sequence 2759 BP; 605 A; 668 C; 718 G; 768 T; 0 other; aatttcgatt caaattcacc cgtacctccg gagctcgatc cggaccctgc gggacttggt 60 gtaaatccca accagacggt tgctctacgc ccataatatc aatacaacat gtcgaaactc 120 ggagctagct tcaagtcctt gactttcgct gtacgcagcg attacataat ttcgcgcatc 180 tgacgcgccc tttaataccg ttggagtcct gcacttcttc ggcactgata caaccactac 240 ggtggttaag gagttttcgg ctgctgggcc gatcgtccct ttacggaaat cctgttttcc 300 gttctctgtt cgcgctgctg ttcgcgcgat taaagctgcc ggacgtccta ttgacgctcc 360 gcgctccgga tgcctctgtg gcctccctgt tttcgacaca tctggtgtcg tgcgtccccg 420 ctctgttgcg ggcgcttgga ggtatgctct gtgtaaacct ccccttactg ctgccgccaa 480 gaagtccatt cgcaaggcga agaaagattc tgcattcttt ctcagccggg cttcttctct 540 cttctctcgg gaagtcccct gcggcacgcg tcacagactt cgcaggcgtg ttgcgaaact 600 agttgaccct actgtgcgtg aaagtcccca agacaagact aaacttaagg ggcgccgata 660 tggcaaaaat tctgacctcc cgtatatggg ggaagcggcg ttggatgaca tccttcgctg 720 gattgagggg gtaaatcctc cgccgtcgat ggtcgccgtt ccggtgccca tctcttttgg 780 cactctgccc actacggctt ggtgctctga ggccgacgcc gctgttctgc ggtgtcgctt 840 agactatcac gccgctgcga cttcctttcg taatgaaggg aagcacgtga gatacgtcta 900 taatgacgtg tcttccgctg ccaaccgtcc tcgtacggtt tctccccgca agtgcgggcg 960 tatttttccc agcggttctg cgctgggtgt tgaggttcca agtactaggg accgccacac 1020 cgctttcgtg agatctactc acgctagcgt tttcttttct gacgcggttc gccgcgttcg 1080 aatgttccgt cctgggcgga ataatttctt tactagcgtc gtcagtgggc ggcgcgttag 1140 ttactttaga cccggaccta acggtacggt gtctgttcta atgtcggatg gcgtcaatac 1200 ggcgcgtctc gacgttgtcg ctcccgcgta ctatgcgtac gcaaaaacgt tgggcgccag 1260 agtgcgctgt ttgtgggagt cgtccgattt ggacgatgct aaaatacgtg acggtcaatg 1320 ctacattcgt cacgtgtacg acgtggccct atattttggg aggcgcgtcg acctttctgt 1380 gcgccgcact ttgggtttat tccccacagt gggtgcgtta aaggcttatc ttgttcgcga 1440 gtatggtcgc gactctttga aggttcagat gcgcgggact tacacttttg gcagtgtatt 1500 tcattgcctg tcgactaaat cttctgtcga cttaagatct gttcctaacc atcacttggt 1560 tggtggtgag tctgctcact tgtttgttgg gcagattcgt cttgatgtcc gtggtggcgt 1620 ctctaagctg tgctgtcgga attgtcccgc acgcataaac tagattttag cgagcgagcc 1680 tttacggctt acggtatcct tttgcagaag ggcaccgtgg caaccgtttg cggtcagttt 1740 gacattaatt tagtttctcc gtcttgcgtg taggttaata cgcttctcag aacgtatggt 1800 tgtattaact aactttaatt cgaacatatt tattgtttaa agtctgtgag ttacgatgga 1860 tgatactagc ggacaaactt tcgtttctgt gaacctttct gacgaaagca acacggcaag 1920 cactaaagtt gaaaacgtaa aatcggaagc ggatcgcttg gaatttttac gtaaaatgaa 1980 tccctttatt gttgacgctc tggtgcggaa aaccaattat cagggtgctc gctttcgcgc 2040 aagaataata ggagtgtgcg tggattgtgg tagaaaacac gacaaggcgc tcaagactga 2100 acgtaagtgt aaggtcaaca atacgcaatc tcagaacgag gtggcgcata tgttgatgca 2160 cgatcccgtt aagtatttga acaaaagaaa ggctagagcc ttttctaacg cagagatgtt 2220 tgcgattgaa ttggttttgt acaccaagga aaggcaattg gcggtcgatt tagccgctga 2280 aagggagaag acgagactgg ctcgtagaca cccaatacgt tctccggaag aaactccgga 2340 acattataaa ttcggtatga ctgctaaggc aatgttaccg gacatcaacg ccgtagacgt 2400 tggtgataac gaggaaactt cgtcggagta cccagtgagt ctgagtgttt ctggcggagt 2460 tctccgtgaa caccacttca tctgattgaa gtggacggaa taagttcctt gcggaacttt 2520 aagtcgggtt ggtaaaaacc ctttatgatg gtgatgtatc actagacaat aaccggatgg 2580 gtaaagtctt taaaatgatc gaggggaaaa ttaaccgtat cctctcgttg gtctaagctc 2640 ccacagagtg gtagtggtct caagtgaggc ttaacgtatg cgtgaaccaa agaagttctc 2700 cttagagtgt gtgttgttta cccaacacac tgtccctatg gggggccaac ataggtcca 2759 //