ID X15511; SV 1; linear; genomic RNA; STD; VRL; 4733 BP. XX AC X15511; XX DT 23-NOV-1989 (Rel. 21, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Cymbidium ringspot tombusvirus RNA XX KW . XX OS Cymbidium ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Tombusvirus. XX RN [1] RP 1-4733 RA Grieco F.; RT ; RL Submitted (08-JUN-1989) to the INSDC. RL Grieco F., Centro di Studio sui virus e le virosi delle colture , RL mediterranee c/o dip. di patol. vegetale - universita, di bari , Via RL Amendola n 165/A 70126 Bari, Italy. XX RN [2] RP 1-4733 RX DOI; 10.1093/nar/17.15.6383. RX PUBMED; 2771646. RA Grieco F., Burgyan J., Russo M.; RT "The nucleotide sequence of cymbidium ringspot virus RNA"; RL Nucleic Acids Res. 17(15):6383-6383(1989). XX DR MD5; 3f3ea9c28926496e9626761693e87471. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC136688; 12438600. DR EuropePMC; PMC1370487; 13130137. DR EuropePMC; PMC387715; 15078956. DR EuropePMC; PMC516415; 15367615. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00215; Tombus_3_III. DR RFAM; RF00510; Tombus_IRE. XX CC Data kindly reviewed (11-SEP-1989) by Grieco F. XX FH Key Location/Qualifiers FH FT source 1..4733 FT /organism="Cymbidium ringspot virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12144" FT CDS 161..2617 FT /transl_except=(pos:1049..1051,aa:OTHER) FT /note="translated region" FT /note="readthrough stop-codon" FT /db_xref="GOA:P17459" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P17459" FT /protein_id="CAB38439.1" FT /translation="METIKRLIWPKKEIFVGDFAIGVNRTVPVDVFQLVCRVVLRYMRT FT GKIECESDSLSKFVVELLKTDCAAKWEWFMKRRQGGDYIVPLSIATIPLMPLLSCTTSV FT RAVSVGVLGCGFSSNIPIPRLSVPRKGLLLRLAAGLALAPICALAVYATLPREKLSVYK FT LRTEARTHMEDEKEATDCLVVESARELKGKDGEDLLTGSRMTKVVASTGRRRRTPYAAK FT VAQVARAKVGYLRNTPENRLIYQRVIIEIMDKDCVRYVDRDVILPMAIGCCFVYQDGVE FT ESAALWGSQDSLGVKXGGLVRLPGVVTQINRDIPSDVLLPQEVLEVRTGPPIAKDRNIF FT MVAGCPSQARFLVHNHCLKNLKRGLVERVFCVEKDGKLTRTPQPTKGSFGRLSPFRKAV FT CEKVGVAHRLGYDGFLSYYSGAKLRTYTRAVESLHITPVSERDSHLTTFVKAEKISTSK FT GDPAPRVIQPRNPRYNVELGRYLRHMESKLMKAVDDVFGETTCIKGYTADEVGAIFRRK FT WDRFDKPVAIGLDASRFDQHCSVEALQYEHSFYRALYPGNKLLSKLLEWQLHNKGKGYV FT PDGTITYKKEGCRMSGDINTSLGNYLLMCAMVHGYMRHLGINEFSLANCGDDCVLIIER FT RNLKRVQGTLPGYFLNLGYTMKVESPVFQLEEVEFCQAHPVQFQGGWKMVRNVRTAMSK FT DVHCVNNIRDLATRRAWSNAQHHGGLALSAGIPVVERFYSRFPLYDMPVKHQRIDTVTN FT VHKWRGSGGNYHVTPESRASFWAAFGLTGDEQVALEDRLDRWEMDLFGREGVDAHEPSI FT LDSAVA" FT CDS 161..1051 FT /note="translated region" FT /db_xref="GOA:P17459" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/Swiss-Prot:P17459" FT /protein_id="CAA33532.1" FT /translation="METIKRLIWPKKEIFVGDFAIGVNRTVPVDVFQLVCRVVLRYMRT FT GKIECESDSLSKFVVELLKTDCAAKWEWFMKRRQGGDYIVPLSIATIPLMPLLSCTTSV FT RAVSVGVLGCGFSSNIPIPRLSVPRKGLLLRLAAGLALAPICALAVYATLPREKLSVYK FT LRTEARTHMEDEKEATDCLVVESARELKGKDGEDLLTGSRMTKVVASTGRRRRTPYAAK FT VAQVARAKVGYLRNTPENRLIYQRVIIEIMDKDCVRYVDRDVILPMAIGCCFVYQDGVE FT ESAALWGSQDSLGVK" FT CDS 2629..3771 FT /note="translated region" FT /db_xref="GOA:P17456" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P17456" FT /protein_id="CAA33533.1" FT /translation="MAMTTTNNNRAMTRAAKQALPALGALATSGMGQQLFMSGVNYAIE FT KGKQFVPNRRGGKKNRNTDMVAHPGALSGSMAAPVAISRIVRGSKPRFIRSKGSVTITH FT RELVGQFNSSSALVVNGGITGNLYKINPANAVLFPWLQTLASNFDQYMFNTLRLQYVPM FT CASTETGRVAIYFDKDSQDLEPVDRIELANMRHLTETAPWCEGSLRVPVDSVKRFMNDN FT STVDPKLIDLGQVGLATYGGPGTNAVGDLFIHYTVTFYEPQPSSGLTSTLQTGTGSANA FT GPTLVAVATTATTTTVTFRSPGTYLVSMVQRATTFTGVTPIALTFNSNTNTTAAGTNYS FT ANYNVTVPVPGAQMRFVGTGFGNYTLQVTRAKITNAATLL" FT CDS 3813..4382 FT /note="translated region" FT /db_xref="GOA:Q66227" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q66227" FT /protein_id="CAA33534.1" FT /translation="MDTEYQQVNKPWNELYKEVTLGNKLTVNVGMEEEEVLLLPSNFPT FT KVRVSMSGGYITVRRVRIRIIPLVSRKAGVSGKLYLRDISDTTGQKLHCTELLDLGKEI FT RLTMPHLDFSVSAKSDVPIAFGFEELVSPFREGRELFSVSLRWQLGLSAQCYSLPPANV FT KVMYQEDALKALKPSKKKASRTDSSV" FT CDS 3845..4363 FT /note="translated region" FT /db_xref="GOA:P17457" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/Swiss-Prot:P17457" FT /protein_id="CAA33535.1" FT /translation="MERAIQGSDVREQADSECWDGGGGGTTSPFKLPDESPSLHEWRLH FT HSEESENKDNPLGFKESWSFGKVVFKRYLRYDGAETSLHRALGSWERDSVNDAASRFLG FT LSQIGCTYSIRFRGTRLTLSGGSGTLQRLIEMAIRTKRTMLQPTPSEREGNVSRRRPEG FT TEAFKEESE" XX SQ Sequence 4733 BP; 1236 A; 1045 C; 1319 G; 1132 T; 1 other; ngaaatcctc caggacacct cgacctaggt tgtgtatccg gtgatttgcg tactgttgct 60 ttgcgtagag gatttctctc ctgttcacta catatcaggg gtttgaaggc agggtctacc 120 tttcgggggg ataaattgta acttcctgca aataagcaaa atggagacca tcaagagatt 180 aatctggcct aagaaagaaa tttttgtagg cgatttcgcg atcggtgtta ataggacggt 240 accggtggat gtcttccaat tggtgtgccg tgttgtgctg agatatatga ggacagggaa 300 aatagagtgt gagtcagaca gtctgtctaa gttcgttgtg gagttattaa agacagattg 360 tgctgctaag tgggaatggt ttatgaagag acggcagggg ggtgattaca tcgtccctct 420 atctatagcc accatccctc tcatgccgct gttgagttgt accacctcgg tacgcgcagt 480 ctcagtcggg gttttgggtt gtgggtttag ctccaatatc ccaatacctc gtctatctgt 540 gccaaggaaa gggttgctcc tcagactggc ggccggccta gcgttagctc ctatatgcgc 600 gctggccgtg tacgctaccc tgcccaggga aaaactgtcc gtgtataagc taaggacgga 660 ggcacgcaca cacatggagg acgagaagga agcgacggat tgtttagtgg tggagtcggc 720 tcgtgagctc aagggtaagg atggtgagga tctgctcact ggtagtagaa tgaccaaggt 780 tgtggcttcg acaggacgtc gtcgcaggac accatatgca gcgaaagttg cacaggtggc 840 acgtgccaag gttgggtacc tcaggaacac tcctgagaat aggctgatct accagagggt 900 aatcattgaa atcatggaca aagattgcgt caggtatgtt gacagggatg tcatattgcc 960 aatggctatt ggatgctgct ttgtgtacca ggatggagtg gaggagtcgg cggcactttg 1020 ggggtcacag gactccctgg gtgtgaaata gggaggccta gtgcgtctac ctggggttgt 1080 gacacagatc aatcgagata tcccatctga tgtgttactt cctcaggagg tgctagaggt 1140 tcgcacagga cctcccatag ctaaggaccg taatatattt atggttgcag gttgcccatc 1200 acaggcacgg ttcttagttc ataatcactg cctgaaaaac cttaaaaggg gtcttgtgga 1260 gagggttttc tgcgtcgaga aggacggtaa actcactcgc actccacaac ctaccaaagg 1320 atcctttgga cgtctttccc cgttcaggaa agcagtttgt gagaaggttg gggtggccca 1380 tcgcttaggg tatgacgggt tcctgtcata ctacagtggt gcgaaactcc gtacttacac 1440 gcgagctgtg gagagtctgc atatcactcc tgtttcagag agggatagtc atctgactac 1500 cttcgtgaaa gcagagaaga tatcgacgtc taagggtgac ccagcaccta gggtgataca 1560 gcctcgaaac cctaggtaca atgtggaact tggaagatat ctacggcata tggaatccaa 1620 actaatgaaa gctgttgatg acgttttcgg cgaaacgacg tgcatcaaag gttatacagc 1680 tgatgaggta ggcgcaatct tcaggaggaa gtgggatagg ttcgataaac ctgttgccat 1740 tggtctcgac gcgtctagat ttgatcaaca ctgttccgtt gaagcgttgc aatatgagca 1800 tagcttctac agggccttgt accctggcaa caaactcttg agtaagttgt tggaatggca 1860 gctccataac aaaggtaaag gttatgtccc tgatggaacc ataacttaca agaaggaggg 1920 ctgtcgtatg agtggggata taaatacctc gttgggcaat tacctgctga tgtgcgcgat 1980 ggtacatggg tacatgcgtc acttggggat aaatgagttt agtctggcaa actgcgggga 2040 tgactgcgtt ttgattatcg agcgcaggaa tcttaagcgg gtacagggaa cacttcctgg 2100 ttatttccta aatctaggtt atacaatgaa ggtggaatcc cctgtatttc aattggaaga 2160 ggttgaattc tgccaggcac accccgtaca gtttcagggc ggttggaaga tggtcagaaa 2220 tgtccgcaca gccatgagca aagatgtcca ctgcgttaac aatatacgcg atctggcaac 2280 aaggagggct tggagtaatg cccaacacca tggtgggttg gcgcttagcg ctggtatacc 2340 tgtggttgaa aggttttact ctaggtttcc tctgtatgac atgcccgtca aacatcagcg 2400 tattgacaca gtgacaaacg tacataaatg gcgcggatca ggtgggaact accatgtgac 2460 cccggagtct agagctagct tttgggcggc atttggactc acgggggatg aacaggtggc 2520 ccttgaggat cgtctggata gatgggagat ggatctattt ggaagagagg gtgttgacgc 2580 tcatgagccc agcatccttg attccgccgt agcttgacca aatacacaat ggcaatgaca 2640 actaccaaca acaatcgggc gatgacccga gcagcaaaac aagcgttacc ggcattgggt 2700 gctctagcca cctccggtat gggacagcaa ttatttatga gcggggtgaa ctacgctata 2760 gagaaaggga aacaattcgt acccaacagg cgtggaggga agaagaatag gaatacagac 2820 atggttgcgc atccgggcgc cctttcaggg agcatggccg caccggtggc aatctctagg 2880 attgtcaggg gatcaaaacc ccggtttatc aggagtaaag gttctgtcac catcacacac 2940 cgagaattgg tgggtcagtt caatagctcc tcggctttgg tggttaatgg gggaatcacg 3000 gggaacctgt acaagattaa tccggctaat gccgtcttgt tcccctggtt gcaaacattg 3060 gcgtctaatt tcgaccagta catgttcaac acactccgtc tccagtacgt gccaatgtgt 3120 gcaagcaccg agactgggag ggtggctatc tactttgaca aagattctca ggatctagaa 3180 ccagtagatc gcatcgaact agcaaacatg cgacacctta cagagaccgc cccttggtgc 3240 gagggctctc tgcgggtgcc agtggacagc gtcaagagat ttatgaatga caattccacc 3300 gtcgatccaa agctgataga cttgggccag gttgggctgg cgacgtatgg agggcccggg 3360 acaaacgcag tgggtgactt attcatccac tacacagtaa ccttctacga accgcaaccg 3420 tcctcaggtt tgacgtctac gctacaaaca gggactggtt cagctaacgc tgggcctacc 3480 ctggttgctg tggctaccac agccacgacg actaccgtga cgttcagatc tccaggtaca 3540 tacctagtct caatggtgca aagggctaca accttcacgg gagtaacgcc cattgccctt 3600 actttcaact ccaatacgaa caccaccgcg gctggtacca attactcagc caattacaat 3660 gtgactgtac ccgtgcctgg tgcacagatg cggtttgtag ggaccggctt cggtaactac 3720 accttgcagg taacacgcgc caaaatcaca aatgctgcaa cacttctgta gttgcattgc 3780 acaggaaggg gcttcttgaa cctaaccatt tcatggacac tgaataccaa caagttaata 3840 aaccatggaa cgagctatac aaggaagtga cgttagggaa caagctgaca gtgaatgttg 3900 ggatggagga ggaggaggta ctacttctcc cttcaaactt cccgacgaaa gtccgagtct 3960 ccatgagtgg aggctacatc acagtgagga gagtgagaat aaggataatc cccttggttt 4020 caaggaaagc tggagtttcg ggaaagttgt atttaagaga tatctcagat acgacggggc 4080 agaaacttca ttgcacagag ctcttggatc ttgggaaaga gattcggtta acgatgccgc 4140 atctagattt ctcggtctca gccaaatcgg atgtacctat agcattcggt ttcgaggaac 4200 tcgtctcacc ctttcgggag ggtcgggaac tcttcagcgt ctcattgaga tggcaattag 4260 gactaagcgc acaatgttac agcctacccc cagcgaacgt gaaggtaatg tatcaagaag 4320 acgccctgaa ggcactgaag ccttcaaaga agaaagcgag taggacagac tcttcagtct 4380 aggttggagg aagcaggaga acactgcttg agggtacagg ttactcttag tgagactagg 4440 ttcgtgtgat gacgagtcag gtcgggctcc gcgctgggtt tggtcaccca ggggatggag 4500 atatggaaag gatctcgtgc gctataagtc taacgaaagt tgagcttgca acatgggtct 4560 atgcctgaat aagtcacgtg agttgccacc actatgaata ggatttttgt tcacgactag 4620 cggagaacat ttgtggaaac caaccaagac acggttgatc tcacccttcg ggggggctat 4680 agagatcgct ggaagcacta ccggacaacc ggaacattgc agcaatgcag ggg 4733 //