ID X06166; SV 1; linear; genomic DNA; STD; VRL; 7743 BP. XX AC X06166; XX DT 19-AUG-1988 (Rel. 17, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 10) XX DE Figwort mosaic virus (FMV) genome XX KW complete genome; unidentified reading frame. XX OS Figwort mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-7743 RX DOI; 10.1093/nar/15.20.8451. RX PUBMED; 3671088. RA Richins R.D., Scholthof H.B., Shepherd R.J.; RT "Sequence of figwort mosaic virus DNA (caulimovirus group)"; RL Nucleic Acids Res. 15(20):8451-8466(1987). XX DR MD5; aac3469c97f2ca5ee69d2560b2136c7b. DR EuropePMC; PMC2631584; 19055784. DR EuropePMC; PMC3289790; 21987074. DR EuropePMC; PMC5052798; 27716385. XX CC ORF IV shows homology with retrovirus gag gene and Drosophila CC retrotransposon copia, ORF V shows homology with avian retroviral CC gag-specific protease p15. XX FH Key Location/Qualifiers FH FT source 1..7743 FT /organism="Figwort mosaic virus" FT /mol_type="genomic DNA" FT /clone="pFMV Sc3" FT /db_xref="taxon:10649" FT CDS 14..985 FT /note="ORF I (AA 1-323)" FT /db_xref="GOA:P09520" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/Swiss-Prot:P09520" FT /protein_id="CAA29523.1" FT /translation="MCSTRKTSVMDEKVIENEEIHFQENSNGFSADLTIHQDKLKQISK FT TGLNLEKEHIFNMPSSLTKAFKTAFKRKNEIFYCVSTKEMSVDIKDVSGQVYLPLITKQ FT EIQQKLMKIDPSVRSKISMIHLGAVKILLTAQFRQGIDTSVKMALIDDRIVNRKDSLLG FT AARGNLAYGKFMFTVYPKFALSLQSKNLDKTLSFIHQFERKDLMKTGDKVFTVTYLIGY FT ALTNSHHSIEYRKNSNIEIEEVFKDIGQIEESPFCDISPIDENWTMDIARNKKSIATGS FT SSRRNFRIDESLLENKDENLLRSMSTKIDTLGKKLSLIYDNE" FT CDS 978..1472 FT /note="ORF II (AA 1-164)" FT /db_xref="GOA:P09521" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/Swiss-Prot:P09521" FT /protein_id="CAA29524.1" FT /translation="MSKDHLDFPHVYKKNKVLKLKPLDLSKNPRSYYFSSQNGSIQAII FT NHCNNINQITARNWLKLSKVLSYFGLEKDTSDSISKNKSPFNRFLKDISHIFREGEGST FT KKASELGEILEKIKNLDLKIENLNKRIPDNLVTKALIKELVKDFDERLTEVRDDIKKVI FT G" FT CDS 1472..1819 FT /note="ORF III (AA 1-115)" FT /db_xref="GOA:P09522" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/Swiss-Prot:P09522" FT /protein_id="CAA29525.1" FT /translation="MAATLSEIRELIQSLTKTANEIKAMLERNSAGKPTGIEEAAAKII FT KDIGDKIDQCECTKKIEEMLDQKQNADTQIVPTKQESSGLVKYSYPNWNVGNEELGSSG FT NPNAVKWPPRK" FT misc_feature 1529..1840 FT /note="ORF IX" FT CDS 1801..3270 FT /note="ORF IV (AA 1-489)" FT /db_xref="GOA:P09519" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/Swiss-Prot:P09519" FT /protein_id="CAA29526.1" FT /translation="MATKKMRISEKLWDSLEKDECNIDEVVQLMSLDEEELITKFAQEV FT SLRIRYLDEKPNEISFIAEATEDYSEPETESSDEETYFQQIRMERGESSETKREQQDLG FT ATRKRKIEERNPFYTPPVHKGIPSSTGRGTEISTLNLDCISSFEERKVMIDKWFNEISL FT IIQTNKESFDTSLKVLTLMEHRTEGIAKSFIKQATWDILITPEKIIEEVLTGFYTMFIG FT LDYALSAEKEEEKRIKKAEELLIKSQLCNICELDNFTCFYEKQINQLKFEDFPKWIELY FT LGKIPIIGKQSKERWDNEKSFTTKYSLAFAKRIIQEEIAKYCDFQRTSKKLKNFSKKCC FT SKNSLDPLVSFGCRDTKKKDFKKSSKYKAYKKKKTLKKLWKKKKRKFTPGKYFSKKKPE FT KFCPQGRKKCRCWICTEEGHYANECPNRKSHQEKVKILIHGMNEGYYPLEDAYTGNLEV FT FSMEIIEETTSEEESTTDSDSSSSDDEQLSF" FT CDS 3248..5248 FT /note="ORF V (AA 1-666)" FT /db_xref="GOA:P09523" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/Swiss-Prot:P09523" FT /protein_id="CAA29527.1" FT /translation="MTSSSLFREGELGHFCLNKQEMLHLNVTNPNSIYIEGKLSFEGYK FT SFNIHCYVDTGASLCIASRYIIPEELWENSPKDIQVKIANQELIKITKVCKNLKVKFAG FT KSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSN FT PSFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIK FT SKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFL FT VENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQ FT VVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNGADKFCMVYVDDII FT VFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILE FT NIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYV FT KKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQA FT EKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRW FT QNWFSKYQFDVEHLEGVKNVLADCLTRDFNA" FT regulatory 5287..5293 FT /note="put. TATA-box" FT /regulatory_class="promoter" FT CDS 5364..6902 FT /note="ORF VI (AA 1-512)" FT /db_xref="GOA:P09524" FT /db_xref="UniProtKB/Swiss-Prot:P09524" FT /protein_id="CAA29528.1" FT /translation="MEELKALRLKEKILEIELNSVKMQIHAYEESLKATTVNSVQEGEI FT LQTESIPECPAQGKETPNPVKADSLLKTILGNERQNPLEGKSSKLVNLTPKSDKDKVKS FT SPVANGSGKDSTNPLNPVALGKSKMTILGQKQADEEEFKPDYLRAASNGQSWFAVYKGP FT NKEFFTEWEIVADICKKRQKSKRFRSKEQAEVSISLYNKDIQDPVNFLRPVKLVKEERA FT AQPLKFKAIAAEQTIQFDEFRQIWEKSRLSDLEDGVQEKFYTNDSASKSTYTFVENAEP FT YLVHTAFRAGLAKVIYPSPNLQELKWFPEGIVKAIKNFRKKVLNAKDAAIFIKIFSSIP FT DWVQSTRYEPYHFIQIGIAKTKKELPSSKVCKEEFSVQSLNKVRVQSLQTISQKLQEIN FT EESSIKVNYCSSTCIMVSKFQKKTSTEDLKLVGIFESNLVNIEQLACGDQTKKEWCRIV FT RRTYQKHLCLYCKDKADSSSTSGEQNNVEKSCPDSPLTNAYDERSDDHKRIPSI" FT regulatory 5896..6902 FT /note="put. TATA-box" FT /regulatory_class="promoter" FT misc_feature 7064..7069 FT /note="poly A signal" FT CDS <7499..7700 FT /codon_start=2 FT /note="ORF VII (AA 1-66)" FT /db_xref="UniProtKB/TrEMBL:Q65933" FT /protein_id="CAA29529.1" FT /translation="MPGLTLQQEYILLAHLILQVLEEVKQVQLHSGDFQSLRSLYARLN FT GLRSHQAHLQARISAVSQHGN" XX SQ Sequence 7743 BP; 3012 A; 1339 C; 1399 G; 1993 T; 0 other; tggtatcaaa gccatgtgct caactagaaa aacatctgta atggatgaaa aggtaattga 60 aaatgaagaa attcatttcc aagaaaattc taatggattt tcagcagatc tcacgatcca 120 tcaagataag ttaaaacaga tttcaaaaac tggtttaaat cttgaaaaag aacatatatt 180 taatatgcct tcttctctta caaaagcttt taaaacagcc tttaaaagaa agaacgaaat 240 attttattgt gtttcaacaa aagaaatgtc agtagatatt aaagatgtct ctggacaagt 300 ttatcttcct cttataacta agcaggaaat acaacaaaag ctgatgaaaa ttgatccatc 360 agtaagaagt aaaatctcaa tgatccacct tggagcagta aagattctac ttacagccca 420 attccggcaa ggaattgata cgtcagttaa aatggcactt atcgatgata gaatcgtcaa 480 tcgaaaagat agtctgctcg gagcagcaag aggtaatctc gcatatggta agtttatgtt 540 taccgtttac cctaaatttg cattgtcatt acaaagcaag aatttagata aaacattaag 600 ctttattcat caatttgaaa gaaaagactt aatgaaaaca ggcgataaag tttttacggt 660 cacataccta ataggatatg ccctgacaaa cagccaccat tctatagaat ataggaaaaa 720 ttccaatatt gaaatagaag aagtctttaa agacataggt caaatagaag aatcaccatt 780 ctgtgatata tctcctatag acgaaaactg gacaatggac attgccagaa acaaaaaatc 840 tatagccaca ggaagtagct ctagaagaaa cttcaggata gacgaaagtt tacttgaaaa 900 caaagacgaa aacctactta ggtctatgtc tacaaaaata gatactctag gtaaaaaact 960 tagtcttatc tacgacaatg agtaaagatc acttagactt tcctcacgtc tacaaaaaga 1020 acaaagttct taagttaaaa cccttagatt tgtcaaaaaa tcctaggagt tattacttta 1080 gcagccaaaa tggtagtatt caagctatta ttaatcactg caataatatt aatcagataa 1140 cagcacgaaa ctggttaaaa ctaagcaaag tattatcata ttttggtcta gaaaaagaca 1200 ctagtgatag tataagcaaa aataaaagcc cgtttaacag gtttttaaaa gatatctctc 1260 acattttcag agagggggaa ggaagtacta aaaaagcttc tgaactagga gaaatcttag 1320 aaaaaattaa gaatttagac ctaaaaatcg aaaatcttaa taaaagaata ccagacaact 1380 tggtaacaaa agccttaatt aaggaattag tcaaagactt tgacgaaaga cttacagaag 1440 tcagagatga cattaagaaa gtcataggat aatggcagcc acattatctg aaattcgtga 1500 actcattcaa agtttaacca aaactgctaa tgagatcaaa gctatgcttg aaagaaattc 1560 tgcaggaaaa cctacaggta ttgaagaagc agcggcaaaa atcatcaaag atattggtga 1620 taaaatcgat cagtgcgaat gcacaaagaa aatcgaagaa atgcttgatc aaaagcaaaa 1680 tgcagacaca cagattgtgc caacaaaaca agagtcctct ggacttgtca aatattcgta 1740 cccaaactgg aatgttggta acgaagaact tggaagctca ggcaacccaa acgcggttaa 1800 atggccacca agaaaatgag aatctcagaa aaactttggg atagtctcga aaaagacgag 1860 tgcaacatcg atgaagttgt acaactcatg agcctcgacg aggaagagct cataaccaaa 1920 tttgcccaag aggtaagttt aagaattagg tatctagatg aaaaacctaa tgaaatttct 1980 tttattgcag aagcaacaga agactactca gaacccgaga cagagtcatc ggacgaggaa 2040 acctatttcc aacaaataag aatggaaaga ggagaaagta gcgaaacaaa acgagaacag 2100 caagatctcg gagctaccag aaaaaggaaa atagaggaaa gaaatccttt ctacactcca 2160 ccagtacata aaggtatacc cagttccact ggaagaggta ccgaaatctc tacccttaac 2220 ttagattgta tatcaagttt tgaggaaaga aaagtcatga ttgataaatg gtttaatgaa 2280 ataagcttaa tcattcagac aaataaagaa agttttgaca caagtctaaa agtcttaacc 2340 ttaatggaac ataggactga aggaattgca aaatctttca taaaacaagc aacatgggat 2400 atactcataa cccctgaaaa aattatagaa gaagtgttaa caggcttcta tacaatgttc 2460 attggtttgg actatgcctt atcggcagaa aaagaagaag aaaaacgtat taaaaaggcg 2520 gaagaacttc ttataaaatc tcagctttgc aatatttgtg aactagataa ttttacttgt 2580 ttttacgaaa aacaaatcaa tcaacttaag tttgaagatt ttcctaaatg gatagaactt 2640 tacttaggta aaatacctat tataggtaag cagtctaaag aaagatggga taatgaaaaa 2700 tctttcacaa caaagtattc tttagcattt gctaaaagga tcattcaaga agaaatcgct 2760 aaatattgtg attttcaaag aacatctaaa aaactaaaaa attttagtaa aaaatgttgt 2820 tcaaaaaata gtcttgaccc tcttgtttca ttcgggtgca gagacacaaa gaaaaaggat 2880 ttcaaaaaat cttctaagta caaagcttat aagaaaaaga aaacccttaa aaaactctgg 2940 aagaaaaaga aaagaaaatt tacaccaggt aaatatttct ctaaaaagaa accagaaaaa 3000 ttctgtccgc aaggaaggaa aaaatgcagg tgctggattt gcactgaaga aggacattat 3060 gcaaatgagt gtccaaatag aaaaagccac caagagaagg taaaaattct tatacatggc 3120 atgaacgagg gatactaccc tctagaggac gcctacacag gtaatctcga ggtattttca 3180 atggaaatca ttgaagaaac aacctcagaa gaagaatcca caacagattc tgattcatca 3240 tcgtcagatg acgagcagct ctctttttag agagggggag ttaggacatt tttgtcttaa 3300 caaacaggaa atgttacatt taaacgtaac aaatccaaat tcaatttata ttgaaggtaa 3360 actatccttt gaaggataca aatcatttaa cattcactgt tatgttgata caggtgccag 3420 tctatgcatt gcatcaaggt acattatacc agaagaactt tgggaaaatt caccaaagga 3480 cattcaggta aaaattgcaa accaggagct gataaagatc actaaggtat gcaaaaacct 3540 caaggtaaaa ttcgcaggta aatccttcga aatacctaca gtataccagc aggaaacagg 3600 tattgatttc ttaatcggta acaacttctg cagattatac aacccgttca tacaatggga 3660 agatagaata gcttttcacc taaaaaatga aatggttcta atcaaaaaag ttactaaagc 3720 cttttcggtc agtaacccat catttttaga aaacatgaaa aaagattcta aaactgaaca 3780 aattccggga acaaatattt caaagaatat tatcaaccca gaagaaaggt attttctaat 3840 tacagaaaaa tatcaaaaaa tagaacaatt actagacaaa gtatgttcag aaaatcctat 3900 agaccctatt aagtctaaac aatggatgaa agcatcaatt aaattaattg atccgctaaa 3960 agttattagg gtaaaaccta tgagctacag tccacaggac agggaaggat ttgccaaaca 4020 aattaaggaa ctccttgatt taggtctaat tatacccagt aaatcccaac atatgtcacc 4080 agccttccta gttgaaaatg aagcagaaag acgtaggggt aaaaagagaa tggttgtaaa 4140 ttataaagca atcaatcagg ctactattgg agatagtcac aatctaccta acatgcagga 4200 attacttaca ttactgcgag gtaaaagcat cttttccagt tttgactgta aaagtggatt 4260 ttggcaggta gttcttgacg aagaaagcca aaagcttaca gctttcacgt gcccacaagg 4320 acatttccag tggaaagtgg tcccattcgg cctaaagcaa gcaccaagca tatttcaaag 4380 acatatgcag acagccttaa atggcgcaga taagttttgt atggtttacg ttgatgatat 4440 catcgttttc agtaattcag aacttgatca ctataaccat gtttatgcag ttttaaaaat 4500 tgtagaaaaa tatggaataa tcctttcaaa aaagaaagct aatcttttta aggaaaaaat 4560 caattttcta ggactagaaa ttgacaaagg gacacattgt ccacaaaatc atattttgga 4620 aaacattcat aaatttccag atagattaga agataaaaaa catcttcaga gatttttagg 4680 agtacttaca tatgccgaga catatattcc taaactcgca gaaattagga aacctttaca 4740 ggttaaacta aaaaaggatg taacctggaa ttggacacaa tctgattcag attacgtaaa 4800 aaagataaag aaaaacctag gatcatttcc taagctttac ttacctaaac cagaagatca 4860 tctcattatt gaaacagatg catctgatag tttttggggc ggtgtcctaa aagcaagagc 4920 gcttgacggt gttgaattaa tttgcaggta tagttcagga agcttcaaac aagcagaaaa 4980 gaattatcac agcaatgata aagaattact agcagtcaag caagtaatca ccaagttttc 5040 agcttaccta acaccagtca ggtttacagt aagaactgat aacaaaaatt ttacttattt 5100 ccttagaatt aatcttaaag gtgatagtaa acaaggacga ttagtccgtt ggcaaaattg 5160 gttcagcaag tatcaatttg atgtcgaaca tcttgaaggt gtaaaaaacg ttttagcaga 5220 ttgcctcacg agagatttta atgcttaaaa acgtaagcgc tgacgtatga tttcaaaaaa 5280 cgcagctata aaagaagccc tccagcttca aagttttcat caacacaaat tctaaaaaca 5340 aaatttttta gagaggggga gtgatggaag aattaaaggc cttgcgccta aaagaaaaaa 5400 ttctagaaat agaattaaat tctgtaaaaa tgcagattca tgcttatgag gaaagcctca 5460 aagccacaac tgttaattca gtacaggaag gagaaatcct acaaactgaa tctattcctg 5520 agtgtccggc tcaaggtaaa gaaacaccaa atccggtgaa agctgatagt ttgctaaaaa 5580 ctattcttgg taatgaacgc cagaatcctc ttgaaggaaa aagttcaaag ttggttaatt 5640 taacaccaaa atccgacaag gataaagtta aatctagtcc ggttgcaaac ggctccggta 5700 aagactcaac aaatccgttg aaccctgttg ctttgggaaa aagcaaaatg actattctcg 5760 gtcaaaaaca agctgatgaa gaagagttca agcctgatta tctcagagca gcctctaatg 5820 gtcagtcatg gtttgcagta tataaaggcc caaacaagga gtttttcact gaatgggaaa 5880 ttgttgctga tatttgcaag aaacgacaaa agtctaaaag attccgatca aaggagcaag 5940 ctgaagtgtc tatcagtctt tacaacaaag acatccaaga cccagtaaat tttctaagac 6000 cagtcaaact agtcaaagaa gaaagagcag cacagccatt gaagttcaag gccattgcag 6060 cagaacaaac catacaattt gatgagtttc gtcagatatg ggaaaaatca agactttcag 6120 atcttgaaga tggtgtacaa gaaaagttct acaccaacga ttcagcaagc aaaagtacat 6180 acacttttgt tgaaaacgca gaaccttatc tggttcacac agcattccga gcaggattag 6240 ccaaggtcat ctatccgagt cctaacctac aggaactaaa atggttccca gaaggaattg 6300 ttaaagcaat taaaaacttt cgaaaaaagg ttttaaatgc aaaagatgca gctatattca 6360 tcaaaatatt tagcagcatt ccagattggg ttcaatcaac aaggtacgag ccatatcact 6420 ttattcaaat tggtatcgcc aaaaccaaga aggaactccc atcctcaaag gtttgtaagg 6480 aagaattctc agtccaaagc ctcaacaagg tcagggtaca gagtctccaa accattagcc 6540 aaaagctaca ggagatcaat gaagaatctt caatcaaagt aaactactgt tccagcacat 6600 gcatcatggt cagtaagttt cagaaaaaga catccaccga agacttaaag ttagtgggca 6660 tctttgaaag taatcttgtc aacatcgagc agctggcttg tggggaccag acaaaaaagg 6720 aatggtgcag aattgttagg cgcacctacc aaaagcatct ttgcctttat tgcaaagata 6780 aagcagattc ctctagtaca agtggggaac aaaataacgt ggaaaagagc tgtcctgaca 6840 gcccactcac taatgcgtat gacgaacgca gtgacgacca caaaagaatt ccctctatat 6900 aagaaggcat tcattcccat ttgaaggatc atcagatact gaaccaatat ttctcactct 6960 aagaaattaa gagctttgta ttcttcaatg agaggctaag accctaaaga gtttcgaaag 7020 agaaatgtag tatagtaaga gtcctcccag tccgggagat tgtaataaag agatcttgta 7080 atggatccaa gtgtctgtaa tttttggaaa aattgatcta taaaatattc aatctttctt 7140 taagcttatt caaagaacaa acatactatc tatcatccaa atccacagag tgacagagag 7200 aaaatggtct gtgttgtgtg gatctgaagt accgccgagg caggaggccg ttagggaaaa 7260 agggactgtt ttgaccgtca aagtatcagg ctggctctag gaaggaagat gaagatatca 7320 ggtattggtt tatgttctaa aaaataagta ataaagaaaa aagtttatta aaaagaaaat 7380 tttatcaaga gcaaattaca tgtctagagg atacctagat ctatattaca ataatcttac 7440 ttacatgttt tatttcgtga ctctaaatta aaaaattgtt taattgttta ttcaaaacaa 7500 tgccaggact aaccctccag caagagtata tactcttagc acaccttatt cttcaggtac 7560 tcgaagaagt caagcaggta caactgcatt caggagactt ccagtctctc agaagtctat 7620 atgctaggct taacgggctt cggtcacacc aagctcatct ccaagcgaga atttcagctg 7680 tttctcaaca cggcaattga agcgtcatga acttcaagaa aatctcggat cccgtccgca 7740 ttc 7743 //