ID U89790; SV 1; circular; genomic DNA; STD; VRL; 4767 BP. XX AC U89790; XX DT 26-AUG-1997 (Rel. 52, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Adeno-associated virus 4, complete genome. XX KW . XX OS Adeno-associated virus - 4 OC Viruses; Parvoviridae; Parvovirinae; Dependoparvovirus. XX RN [1] RP 1-4767 RX PUBMED; 9261407. RA Chiorini J.A., Yang L., Liu Y., Safer B., Kotin R.M.; RT "Cloning of adeno-associated virus type 4 (AAV4) and generation of RT recombinant AAV4 particles"; RL J. Virol. 71(9):6823-6833(1997). XX RN [2] RP 1-4767 RA Chiorini J.A., Yang L., Kotin R.M., Safer B.; RT ; RL Submitted (17-FEB-1997) to the INSDC. RL MHB, NHLBI,NIH, Bld 10/7D18 10 Center Dr. MSC1654, Bethesda, MD 20982-1654, RL USA XX DR MD5; ff6d80702b6cc2a298f4127c670191ad. DR EuropePMC; PMC115897; 11222696. DR EuropePMC; PMC3838263; 24067974. DR EuropePMC; PMC5983388; 29742436. XX FH Key Location/Qualifiers FH FT source 1..4767 FT /organism="Adeno-associated virus - 4" FT /isolate="ATCC VR-646" FT /mol_type="genomic DNA" FT /db_xref="taxon:57579" FT CDS 372..2243 FT /codon_start=1 FT /product="rep" FT /db_xref="GOA:O41854" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O41854" FT /protein_id="AAC58044.1" FT /translation="MPGFYEIVLKVPSDLDEHLPGISDSFVSWVAEKEWELPPDSDMDL FT NLIEQAPLTVAEKLQREFLVEWRRVSKAPEALFFVQFEKGDSYFHLHILVETVGVKSMV FT VGRYVSQIKEKLVTRIYRGVEPQLPNWFAVTKTRNGAGGGNKVVDDCYIPNYLLPKTQP FT ELQWAWTNMDQYISACLNLAERKRLVAQHLTHVSQTQEQNKENQNPNSDAPVIRSKTSA FT RYMELVGWLVDRGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNASKIMSLTKTAP FT DYLVGQNPPEDISSNRIYRILEMNGYDPQYAASVFLGWAQKKFGKRNTIWLFGPATTGK FT TNIAEAIAHAVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKV FT RVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTKRLEHDF FT GKVTKQEVKDFFRWASDHVTEVTHEFYVRKGGARKRPAPNDADISEPKRACPSVAQPST FT SDAEAPVDYADRYQNKCSRHVGMNLMLFPCRQCERMNQNVDICFTHGVMDCAECFPVSE FT SQPVSVVRKRTYQKLCPIHHIMGRAPEVACSACELANVDLDDCDMEQ" FT CDS 2260..4464 FT /codon_start=1 FT /product="capsid" FT /db_xref="GOA:O41855" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="PDB:2G8G" FT /db_xref="UniProtKB/TrEMBL:O41855" FT /protein_id="AAC58045.1" FT /translation="MTDGYLPDWLEDNLSEGVREWWALQPGAPKPKANQQHQDNARGLV FT LPGYKYLGPGNGLDKGEPVNAADAAALEHDKAYDQQLKAGDNPYLKYNHADAEFQQRLQ FT GDTSFGGNLGRAVFQAKKRVLEPLGLVEQAGETAPGKKRPLIESPQQPDSSTGIGKKGK FT QPAKKKLVFEDETGAGDGPPEGSTSGAMSDDSEMRAAAGGAAVEGGQGADGVGNASGDW FT HCDSTWSEGHVTTTSTRTWVLPTYNNHLYKRLGESLQSNTYNGFSTPWGYFDFNRFHCH FT FSPRDWQRLINNNWGMRPKAMRVKIFNIQVKEVTTSNGETTVANNLTSTVQIFADSSYE FT LPYVMDAGQEGSLPPFPNDVFMVPQYGYCGLVTGNTSQQQTDRNAFYCLEYFPSQMLRT FT GNNFEITYSFEKVPFHSMYAHSQSLDRLMNPLIDQYLWGLQSTTTGTTLNAGTATTNFT FT KLRPTNFSNFKKNWLPGPSIKQQGFSKTANQNYKIPATGSDSLIKYETHSTLDGRWSAL FT TPGPPMATAGPADSKFSNSQLIFAGPKQNGNTATVPGTLIFTSEEELAATNATDTDMWG FT NLPGGDQSNSNLPTVDRLTALGAVPGMVWQNRDIYYQGPIWAKIPHTDGHFHPSPLIGG FT FGLKHPPPQIFIKNTPVPANPATTFSSTPVNSFITQYSTGQVSVQIDWEIQKERSKRWN FT PEVQFTSNYGQQNSLLWAPDAAGKYTEPRAIGTRYLTHHL" XX SQ Sequence 4767 BP; 1137 A; 1405 C; 1333 G; 892 T; 0 other; ttggccactc cctctatgcg cgctcgctca ctcactcggc cctggagacc aaaggtctcc 60 agactgccgg cctctggccg gcagggccga gtgagtgagc gagcgcgcat agagggagtg 120 gccaactcca tcatctaggt ttgcccactg acgtcaatgt gacgtcctag ggttagggag 180 gtccctgtat tagcagtcac gtgagtgtcg tatttcgcgg agcgtagcgg agcgcatacc 240 aagctgccac gtcacagcca cgtggtccgt ttgcgacagt ttgcgacacc atgtggtcag 300 gagggtatat aaccgcgagt gagccagcga ggagctccat tttgcccgcg aattttgaac 360 gagcagcagc catgccgggg ttctacgaga tcgtgctgaa ggtgcccagc gacctggacg 420 agcacctgcc cggcatttct gactcttttg tgagctgggt ggccgagaag gaatgggagc 480 tgccgccgga ttctgacatg gacttgaatc tgattgagca ggcacccctg accgtggccg 540 aaaagctgca acgcgagttc ctggtcgagt ggcgccgcgt gagtaaggcc ccggaggccc 600 tcttctttgt ccagttcgag aagggggaca gctacttcca cctgcacatc ctggtggaga 660 ccgtgggcgt caaatccatg gtggtgggcc gctacgtgag ccagattaaa gagaagctgg 720 tgacccgcat ctaccgcggg gtcgagccgc agcttccgaa ctggttcgcg gtgaccaaga 780 cgcgtaatgg cgccggaggc gggaacaagg tggtggacga ctgctacatc cccaactacc 840 tgctccccaa gacccagccc gagctccagt gggcgtggac taacatggac cagtatataa 900 gcgcctgttt gaatctcgcg gagcgtaaac ggctggtggc gcagcatctg acgcacgtgt 960 cgcagacgca ggagcagaac aaggaaaacc agaaccccaa ttctgacgcg ccggtcatca 1020 ggtcaaaaac ctccgccagg tacatggagc tggtcgggtg gctggtggac cgcgggatca 1080 cgtcagaaaa gcaatggatc caggaggacc aggcgtccta catctccttc aacgccgcct 1140 ccaactcgcg gtcacaaatc aaggccgcgc tggacaatgc ctccaaaatc atgagcctga 1200 caaagacggc tccggactac ctggtgggcc agaacccgcc ggaggacatt tccagcaacc 1260 gcatctaccg aatcctcgag atgaacgggt acgatccgca gtacgcggcc tccgtcttcc 1320 tgggctgggc gcaaaagaag ttcgggaaga ggaacaccat ctggctcttt gggccggcca 1380 cgacgggtaa aaccaacatc gcggaagcca tcgcccacgc cgtgcccttc tacggctgcg 1440 tgaactggac caatgagaac tttccgttca acgattgcgt cgacaagatg gtgatctggt 1500 gggaggaggg caagatgacg gccaaggtcg tagagagcgc caaggccatc ctgggcggaa 1560 gcaaggtgcg cgtggaccaa aagtgcaagt catcggccca gatcgaccca actcccgtga 1620 tcgtcacctc caacaccaac atgtgcgcgg tcatcgacgg aaactcgacc accttcgagc 1680 accaacaacc actccaggac cggatgttca agttcgagct caccaagcgc ctggagcacg 1740 actttggcaa ggtcaccaag caggaagtca aagacttttt ccggtgggcg tcagatcacg 1800 tgaccgaggt gactcacgag ttttacgtca gaaagggtgg agctagaaag aggcccgccc 1860 ccaatgacgc agatataagt gagcccaagc gggcctgtcc gtcagttgcg cagccatcga 1920 cgtcagacgc ggaagctccg gtggactacg cggacaggta ccaaaacaaa tgttctcgtc 1980 acgtgggtat gaatctgatg ctttttccct gccggcaatg cgagagaatg aatcagaatg 2040 tggacatttg cttcacgcac ggggtcatgg actgtgccga gtgcttcccc gtgtcagaat 2100 ctcaacccgt gtctgtcgtc agaaagcgga cgtatcagaa actgtgtccg attcatcaca 2160 tcatggggag ggcgcccgag gtggcctgct cggcctgcga actggccaat gtggacttgg 2220 atgactgtga catggaacaa taaatgactc aaaccagata tgactgacgg ttaccttcca 2280 gattggctag aggacaacct ctctgaaggc gttcgagagt ggtgggcgct gcaacctgga 2340 gcccctaaac ccaaggcaaa tcaacaacat caggacaacg ctcggggtct tgtgcttccg 2400 ggttacaaat acctcggacc cggcaacgga ctcgacaagg gggaacccgt caacgcagcg 2460 gacgcggcag ccctcgagca cgacaaggcc tacgaccagc agctcaaggc cggtgacaac 2520 ccctacctca agtacaacca cgccgacgcg gagttccagc agcggcttca gggcgacaca 2580 tcgtttgggg gcaacctcgg cagagcagtc ttccaggcca aaaagagggt tcttgaacct 2640 cttggtctgg ttgagcaagc gggtgagacg gctcctggaa agaagagacc gttgattgaa 2700 tccccccagc agcccgactc ctccacgggt atcggcaaaa aaggcaagca gccggctaaa 2760 aagaagctcg ttttcgaaga cgaaactgga gcaggcgacg gaccccctga gggatcaact 2820 tccggagcca tgtctgatga cagtgagatg cgtgcagcag ctggcggagc tgcagtcgag 2880 ggcggacaag gtgccgatgg agtgggtaat gcctcgggtg attggcattg cgattccacc 2940 tggtctgagg gccacgtcac gaccaccagc accagaacct gggtcttgcc cacctacaac 3000 aaccacctct acaagcgact cggagagagc ctgcagtcca acacctacaa cggattctcc 3060 accccctggg gatactttga cttcaaccgc ttccactgcc acttctcacc acgtgactgg 3120 cagcgactca tcaacaacaa ctggggcatg cgacccaaag ccatgcgggt caaaatcttc 3180 aacatccagg tcaaggaggt cacgacgtcg aacggcgaga caacggtggc taataacctt 3240 accagcacgg ttcagatctt tgcggactcg tcgtacgaac tgccgtacgt gatggatgcg 3300 ggtcaagagg gcagcctgcc tccttttccc aacgacgtct ttatggtgcc ccagtacggc 3360 tactgtggac tggtgaccgg caacacttcg cagcaacaga ctgacagaaa tgccttctac 3420 tgcctggagt actttccttc gcagatgctg cggactggca acaactttga aattacgtac 3480 agttttgaga aggtgccttt ccactcgatg tacgcgcaca gccagagcct ggaccggctg 3540 atgaaccctc tcatcgacca gtacctgtgg ggactgcaat cgaccaccac cggaaccacc 3600 ctgaatgccg ggactgccac caccaacttt accaagctgc ggcctaccaa cttttccaac 3660 tttaaaaaga actggctgcc cgggccttca atcaagcagc agggcttctc aaagactgcc 3720 aatcaaaact acaagatccc tgccaccggg tcagacagtc tcatcaaata cgagacgcac 3780 agcactctgg acggaagatg gagtgccctg acccccggac ctccaatggc cacggctgga 3840 cctgcggaca gcaagttcag caacagccag ctcatctttg cggggcctaa acagaacggc 3900 aacacggcca ccgtacccgg gactctgatc ttcacctctg aggaggagct ggcagccacc 3960 aacgccaccg atacggacat gtggggcaac ctacctggcg gtgaccagag caacagcaac 4020 ctgccgaccg tggacagact gacagccttg ggagccgtgc ctggaatggt ctggcaaaac 4080 agagacattt actaccaggg tcccatttgg gccaagattc ctcataccga tggacacttt 4140 cacccctcac cgctgattgg tgggtttggg ctgaaacacc cgcctcctca aatttttatc 4200 aagaacaccc cggtacctgc gaatcctgca acgaccttca gctctactcc ggtaaactcc 4260 ttcattactc agtacagcac tggccaggtg tcggtgcaga ttgactggga gatccagaag 4320 gagcggtcca aacgctggaa ccccgaggtc cagtttacct ccaactacgg acagcaaaac 4380 tctctgttgt gggctcccga tgcggctggg aaatacactg agcctagggc tatcggtacc 4440 cgctacctca cccaccacct gtaataacct gttaatcaat aaaccggttt attcgtttca 4500 gttgaacttt ggtctccgtg tccttcttat cttatctcgt ttccatggct actgcgtaca 4560 taagcagcgg cctgcggcgc ttgcgcttcg cggtttacaa ctgccggtta atcagtaact 4620 tctggcaaac cagatgatgg agttggccac attagctatg cgcgctcgct cactcactcg 4680 gccctggaga ccaaaggtct ccagactgcc ggcctctggc cggcagggcc gagtgagtga 4740 gcgagcgcgc atagagggag tggccaa 4767 //