ID U23142; SV 1; linear; genomic RNA; STD; VRL; 4451 BP. XX AC U23142; XX DT 14-APR-1995 (Rel. 43, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Rice yellow mottle virus from Nigeria, complete genome. XX KW . XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4451 RA Pinto Y.M., Baulcombe D.C.; RT ; RL Unpublished. XX RN [2] RP 1-4451 RA Pinto Y.M.; RT ; RL Submitted (21-MAR-1995) to the INSDC. RL Yvonne M. Pinto, The Sainsbury Laboratory, John Innes Institute, Norwich RL Reserch Park, Colney Lane, Norwich, Norfolk, NR4 7UH, United Kingdom XX DR MD5; 7eb17d298a9575b8a1889450c1f2f2e9. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC371063; 15016846. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4451 FT /organism="Rice yellow mottle virus" FT /isolate="Nigeria" FT /mol_type="genomic RNA" FT /db_xref="taxon:31744" FT 5'UTR 1..80 FT CDS 81..554 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q86518" FT /protein_id="AAA64286.1" FT /translation="MTRLEVLIRPTQQTVAKAIAAGYTHSLTWVWHSQTWDVDAVNDPV FT LSADFNPERVGWVSVSFACTRCTAHYYTCEQVKYFVNIPPVHYDVVCADCERSVQEDDE FT IDREHNERNAEISACNARALSEGRPATLVYLSRDACDIPEHSGTCRFDKYLNF" FT CDS 609..3608 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="GOA:Q86519" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q86519" FT /protein_id="AAA64287.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVAVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVAESPFEIYGKFREANS FT EEYDESLKHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPIAPSISRTRRKRSKRVEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSVTPSLPTECPSATLESRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLSVLRGEVKQSLTSLILQAGRFNRTVCPSGLAQAVQSLQERYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLAGLANSNGEVRGLARDLVC FT LAVVERLNPLPSVDPPQHNWTPRELVEKGLCDPVRLFVKNEPHPRKKLLERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGNFQGNLRRAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMGELIGSPWCIAMGDDSVEGWIEGGQSKYAALGHTCKE FT YYPCKTRGRELLEFNFCSHLIRRGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT GRIERYLRGIGRVSHKDSQEGQENQPQPGAARKEEEPASTWAFGGTPASTGSSGSGLPD FT IWDGSWSTIF" FT CDS 2093..2380 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q86520" FT /protein_id="AAA64288.1" FT /translation="MPFSYVGKSGVIFGEHAGKSVCAAVKDAISVFPDLEGFVCPERGS FT KAELDFPHPPSRSVQQNGMSLRARASSPITPRKVPKSPPQAMPQGRVEVR" FT CDS 3583..4167 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4" FT /db_xref="GOA:Q86521" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q86521" FT /protein_id="AAA64289.1" FT /translation="MVPGPLSSNTCPSHSVEFLADFKRSSTSADATTYDCVPFNLPRVW FT SLARCYSMWKPTRWDVVYLPEVSATVAGSIEMCFLYDYADTIPSDTGKMSRTAGFVTSS FT VWYGAEGCHLLSGGSARNAVVASMDCSRVGWKRVTSSIPSSVDPNVVNTILPARLAVRS FT SIKPTVSDTPGKLYAIVSMVLRDPVDPTLNT" FT 3'UTR 4168..4451 XX SQ Sequence 4451 BP; 961 A; 1174 C; 1287 G; 1029 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gcagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg actcagcaga 120 ctgtggcaaa agccatcgcc gcgggctata cgcactcgct cacctgggtt tggcattctc 180 agacctggga cgttgacgca gtgaacgatc cagttctcag cgccgacttc aacccggaga 240 gggttggttg ggtgtcagtg tcgtttgcct gtactcggtg tacggctcac tactacacgt 300 gtgagcaggt gaagtatttc gtgaatatac cacctgtgca ctacgacgtg gtgtgtgccg 360 attgcgagcg cagtgttcaa gaggacgacg agatcgaccg tgagcacaac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggctc tgagtgaggg ccggccagca accctggttt 480 acctctctcg agacgcttgt gatatccccg agcactccgg tacgtgccgg ttcgacaagt 540 acctcaattt ctgagggaat cagtcctgcc gacatctaag gagcggtctt ggttcagact 600 gacacgggat gggctcttct gttgttggtc gctttctcac tcgcaccaag gagacaacga 660 gggtggactc caacctcctc atcgtcttgg ctgggttgat agcggccgcg atagtctcag 720 agcgcctacc cgtgacggcg tcattgtggg caatcccctc agctatcata gcaaactgga 780 tcgtgctgtc agctcacgag agcttcagcc ggttcgttga gggggttgag attgagccca 840 tgtccacact ccggtatggc aaggtacaat ctgcccctag gtttgatccc tcccggggtt 900 atgtggttga cgtgtcatac aacggccatg taattccggt gatattggac ttcactacga 960 cgacagctct gtcggttccc caaagagtaa atcctggggt ctcgatggag gctagccgtg 1020 gggggctccc tccgacgtcc gtcaaactcg aagatgtgcc gccgagcgtt gcggtcttgt 1080 accacgactc cgtcaggcta ggcctaggaa ccagagtgcg aactcccacg ggtcgtgatt 1140 tgctcatgac taatcatcat atcgctgctc tggaacctaa tggcatcgcg tacaagggcc 1200 accttaagaa agtggctctg gacgcgccag tcatcgcatg tgaccatcca cacatagact 1260 gcgcgtttta cgaggtgccg cccaagatct ggtctctctt gggggtcaag tctgccagtt 1320 tgaaacctct ggttaagcaa actgcggtgt cactcttcgg aggctcgtca tctactgact 1380 tctcaagttg tgttgggata gcccagattg gggacaatcc gttcctgata aggcatcaga 1440 gcacgacttg cagtgggtgg tcgggctccc cgctctacca caaaggttgc gtggttggtc 1500 tgcatatagg tgctgcggat ggttataatg tggcatctaa tgtagcttgg tacttccata 1560 ccttcaagaa ggaggttgtc gctgagtctc cgtttgagat ttacggcaag ttccgagaag 1620 caaactccga ggagtacgac gaaagtctga aacatggggt tgagtatgcg gagtacgact 1680 tctctggtga taccattcgg gcatcttcca atacctgggt gcgtgagaga gagaggtacc 1740 acgctgagga acgtcgtaag tccggccagc ctagctgggc agatcgtttt ggtgacgaca 1800 gtggtgagga tgttgatatc gagacatcgc atcccatagc accgtcaata tctagaacgc 1860 ggcggaaacg gtcgaagcgc gttgagcagt tcgtcgacgc ggtttcggag tgttctttct 1920 cgttcgagtc agctcacgag gggatcaccc cagagacctc tgcttatgac cacgttcctt 1980 taaactgcca gggggcgggc tcgagccttc gggcgagtcc gcccttggac ggcttatcca 2040 actcggagaa taccgctggg actccctcgg tgactccctc ccttccgacg gaatgccctt 2100 cagctacgtt ggaaagtcgg gtgtcatctt tggagaacat gctgggaaaa gtgtctgcgc 2160 agctgtcaaa gacgcaatct cagtattccc agatcttgaa ggatttgtct gtcctgagag 2220 gggaagtaaa gcagagcttg acttccctca tcctccaagc cggtcggttc aacagaacgg 2280 tatgtccctc cgggctcgcg caagcagtcc aatcactcca agaaaggtac ccaaaagtcc 2340 cccccaggcg atgcctcagg gacgagtgga ggttcgatga catcttcgat gaagtcgaga 2400 gaatcctctg cgaaaccggc gaagtgaatt ccgcttcctc gccgggggtg ccgctcgcgg 2460 gccttgctaa ctccaatggc gaggttcgag ggcttgcgag agatttggta tgtttagctg 2520 tggtggagcg attgaatccc ttaccctcgg ttgacccccc ccagcataac tggacaccca 2580 gggagctggt agagaaaggt ctctgtgacc ctgtgcgctt gtttgtcaag aacgagccac 2640 acccacggaa gaaattgctt gaacgcagat tcaggctgat ctcttctgtt tctctagtcg 2700 accagctggt ggagcggatg cttttcgggc cccagaacaa caccgagatt tcgacttggt 2760 ggcagtggcc ctcgaagccg ggcatgggtc ttctgacccc tgaacaaatc cgtttggtgt 2820 gggacgacgt gttccagaag caccaggccc accctgcggc tgaggcagac atatcggggt 2880 ttgactggtc cgttcaggac tgggagttgt ggtcagacct cgcgatccgt ataaacagag 2940 ggaatttcca gggaaacctc aggagagcgg ctatcagccg ctactactgt tttatgaact 3000 ctgttttcca actctcagat ggaactctca tccagcagga attgcccgga ctgatgaagt 3060 ctggctctta ctgcacctca tctacaaact cgcgcattcg gtgcctcatg ggtgagctta 3120 tcggctcgcc gtggtgcata gcgatgggcg acgattcagt ggaggggtgg attgaggggg 3180 gccagtccaa gtacgccgcg ctaggtcaca cctgcaagga gtactaccca tgtaagacca 3240 gagggcgcga gctcttggaa ttcaacttct gttcgcattt gatcaggagg ggtcatgctg 3300 agctaacttc atggccgaag gcgttgtttc gctttctgtc cagcaagcat gaggactttg 3360 aggatctgtg ggttgagctc cacacgtgcg gggtgtgggg ccggatcgaa cgatatctgc 3420 gtgggatagg gcgtgtctcc cacaaagata gccaggaagg gcaagaaaac caaccccaac 3480 caggggcagc aaggaaagaa gaagagccgg cgtccacgtg ggcgttcggc ggaaccccag 3540 cttcaacggg ctccagtggc tcaggcctcc cggatatctg ggatggttcc tggtccacta 3600 tcttctaaca cctgcccgtc ccactccgtt gagttccttg cggactttaa gcggagttcc 3660 acatcggcgg acgcgacgac atacgattgt gtcccgttta atctgcctcg ggtgtggagt 3720 cttgcccgtt gttactccat gtggaagcca acacggtggg atgtcgtcta cctccctgag 3780 gttagcgcga ctgtggctgg aagtatcgag atgtgctttc tctacgacta cgccgataca 3840 atcccaagtg acacgggtaa gatgagcagg acggcgggct tcgtcacctc tagcgtttgg 3900 tacggcgcgg agggctgcca cttgttaagt ggtggctcag cacgaaatgc cgtggtcgcc 3960 tcgatggact gttcccgagt cggctggaaa cgcgttacta gttctatacc tagcagcgtg 4020 gatcccaacg tcgtaaacac catactgcca gcaaggctag ctgtgcgatc gtcgatcaaa 4080 ccgacggtta gcgatactcc ggggaaactc tacgctatcg ttagtatggt cctgcgggat 4140 ccggttgatc caacactcaa tacgtgaacc ggatctggtg gagataggta ttggcaccag 4200 tgatgatcca cggattagct cagagatcga ctaccctgaa aaggatgttg agcgttctcg 4260 aacgcgggct caatcctacg agatgatgct ggcgcctatc ccacgtgagg agttgcactc 4320 acgctttcaa cccaaagcaa cccatgcact ggatagtgct tacccagatg gttttcggag 4380 ctactgggcg gacttttcac aaaccgaatt ccccatttct tccgagagaa ttctcgggat 4440 gggtggggga g 4451 //