ID U08999; SV 1; linear; genomic RNA; STD; VRL; 4647 BP. XX AC U08999; XX DT 09-APR-1995 (Rel. 43, Created) DT 23-SEP-2009 (Rel. 102, Last updated, Version 4) XX DE Trichomonas vaginalis virus 1 strain T1 capsid protein gene, complete cds; DE and RNA-dependent RNA polymerase (pol) gene, partial cds. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4647 RX DOI; 10.1016/S0042-6822(95)80008-5. RX PUBMED; 7831841. RA Tai J.H., Ip C.F.; RT "The cDNA sequence of Trichomonas vaginalis virus-T1 double-stranded RNA"; RL Virology 206(1):773-776(1995). XX RN [2] RP 1-4647 RA Tai J.-H.; RT ; RL Submitted (19-APR-1994) to the INSDC. RL Jung-Hsiang Tai, Division of Infectious Diseases, Institute of Biomedical RL Sciences, Academia Sinica, Rm. 414, Taipei, Taiwan 115, ROC XX DR MD5; 95e86bac9e3a1cad120aca8ca12bd8d1. DR EuropePMC; PMC2526308; 17570970. XX FH Key Location/Qualifiers FH FT source 1..4647 FT /organism="Trichomonas vaginalis virus 1" FT /strain="T1" FT /mol_type="genomic RNA" FT /db_xref="taxon:674953" FT 5'UTR 1..287 FT CDS 288..2324 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q90154" FT /protein_id="AAA62867.1" FT /translation="MEASANGLSHDDNANKSQNVGPSTLPRSDKQGGEKHENSFNSFSN FT DFFFNFLRMSTNTHISDSPGVSFVAKDGTPYSSLTIPSGVGRLTHNVVASAVQLNITAS FT NTLEVDYGFGQDVSRTTGTIPIPIFDGEKYKETARALAAIFSKKGMSVDVTSQTVQETL FT KNSDLTIATVAAGYYTALAARHELTKDVSEAAHTIPFVTALSDTFSAALNAQRTSHVIS FT SCLRCPNSRNAQRDIVIGTVLWNNVFVESLSEHNMAVPNPNDISFFIPNKALSSSWWCA FT IWLLNAFLHSFIAPTRIHIFITQGETYHLAPFTDSDVYEAVRFLLAMSKSSRPMPESVE FT SMLYAYGTQMIIQPHSLYTEGGLIRRMIFTVPHLPAHGYFVTNSEFSRYMNIAVPDDPR FT SAKDFVIGAGTGLLQIVLAYQAAFSCAGPIALHWHANDAISQGMDRVASIYLEGRYFTI FT PMAVNVATNVAQYTTMVRADPEYRHTLDRILPRIFGPSTDTVFDFIESAITSSWVSIDA FT RKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVDYLMNGGDLR FT NCPILRTLKAAEREETVTFMCKEKVGSLYAIDGTVRVFKRFETIDLAQLGWTSHGKVMK FT PYAFRAPVIQGMTICSTAYTSTAIDIITTVFGPLRLRVGSLFE" FT regulatory 2301..2350 FT /function="ribosomal frameshifting" FT /regulatory_class="other" FT gene <2308..4578 FT /gene="pol" FT CDS <2308..4578 FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q90155" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q90155" FT /protein_id="AAA62868.1" FT /translation="DPFLSKAVRCGPVIPSVKHHFNINYLSILKHNGNEYTFVPGYGWV FT LQDDYLLNAVKMVGEGDLPPNQLPYDDDLLFTYAKILLYDYISHFPEFRHKNPRLLTSE FT TELQLFPLKENSAARTKANFYARTLWNETTSDKSAFKPGTYNDTVAGLLMWQQCALMWS FT LPKLIINKIISGVCDALTEKVSLTLLKRISDWLKQLGLAYSPIFRLFIELPTLLGRGAI FT PGDAALDMKHRLTYNPLMTVDVPKTQLHDLIYRLLSRNYNNTKISSFEHHLEERLLWSR FT SGSHYYPDEQIDQLLPPQPTRKEFLDIVTIDYIKQCKPQVFIRQSRKLEHGKERFIYNC FT DTISYVYFDFVLKLFESGWQDSEAILSPGDYSSECLHAKISGYKYKAMLDYTDFNSQHT FT IQSMRLIFETMKELLPPEASFALDWCIASFDNMQTSDGRKWTATLPSGHRATTFINTVL FT NWCYTQMVGLKFDSFMCAGDDVILMSQEPISLAPILKSQFKFNPSKQSTGTRGEFLRKH FT YTEAGVFAYPCRAIASLVSGNWLSESLRDNTPILVPIQNGIDRLRSRAGLLGVPWKLGL FT SELIEREAIPKDVSMALLNSHAAGPGLITRDYSSFTVTPTPPKLHSSLEYTATRHGLQD FT LCKHVPWKQLTANECNKLGQQIKKMSHRHCSQTKITYKCVYEVFKPSGLPTVLSEVSQS FT ALSLVWWQAMLKEAMQDYSTKKKDAHMYACNACTSSVSGDAFLRATSKMAGVLITSLIS FT SSS" FT 3'UTR 4576..4647 XX SQ Sequence 4647 BP; 1348 A; 1156 C; 926 G; 1217 T; 0 other; actcaacatt gctacttcat catgacgaac ccgtgacgcg gacacgtaac aagcgtagtg 60 tcctcgacga ttgccatcct cgtgtgaatt ccgggctccg cttgcactga tggtacctcc 120 tacgaaactt ggagaggctt cggtctcgaa gagcggtaat gtaccctctg cgcctgggac 180 ctaatcgcgt tttgctgtag gtaattcagt agatggaagg attaagggtc aaacatcttg 240 gttcgccaag tatgtcctta ccagtactct actgagcttg aatacccatg gaggcttctg 300 ctaatgggtt atcacatgat gataatgcga ataaatcgca aaatgttgga ccttctactc 360 ttccgaggtc agataaacaa ggaggagaaa aacacgaaaa ttcttttaat tctttttcta 420 atgatttctt ttttaacttc ttacgtatgt caaccaacac gcacatctca gacagtccag 480 gcgtttcttt cgttgctaaa gatggtacac catacagttc actcacaatt ccttcaggtg 540 tcggtcgtct tactcacaat gtagttgcat ctgccgtcca gctcaatatt acggccagta 600 acacattgga agtagactac ggcttcggcc aagatgtttc aagaaccaca ggcactatcc 660 caatccctat ctttgatggt gaaaaataca aagaaacggc ccgcgcatta gccgctatct 720 tcagcaagaa aggcatgtca gtcgacgtca cctcacagac tgtccaagaa actctcaaga 780 actcagacct caccatcgcc actgtcgcag ctggatatta cacagcctta gctgcgcgtc 840 acgaacttac gaaagacgta agcgaggctg cccacaccat tccattcgtt accgctttat 900 cggatacatt ctcagcagca ctaaatgcac aacgtacaag ccatgtcata tcttcttgct 960 tacgttgtcc aaattccagg aatgctcaac gtgacatcgt aatcggtacg gttttatgga 1020 ataacgtttt tgttgagagc ctctccgaac acaacatggc ggttcccaat ccaaacgaca 1080 tatcattttt cattccgaac aaagctctct catcttcttg gtggtgcgct atttggctcc 1140 tcaatgcatt tcttcacagc tttatcgcac caactcgtat ccacatcttc attacacaag 1200 gagaaacata ccacctcgct cctttcaccg attcggatgt ctacgaggcc gttcgtttct 1260 tgctcgcaat gtcaaagtca tcacgcccaa tgccagagag cgtcgagagt atgttatatg 1320 catacggcac acagatgatc atccaaccac attcgctcta cacagaggga ggcttgatca 1380 gaagaatgat ctttacagtt ccacaccttc cagctcatgg ttacttcgtc acgaattccg 1440 aattctcgag atacatgaat atcgctgttc cagacgaccc gcgttctgca aaagacttcg 1500 ttatcggtgc aggaacaggt ctcttacaaa tcgtactggc ttaccaagct gctttcagct 1560 gtgctggacc tattgctctt cactggcatg caaacgatgc tatctcccaa ggtatggaca 1620 gagtcgcaag catctacctt gaaggaagat acttcaccat cccaatggca gttaacgttg 1680 ctactaatgt cgctcaatac actacaatgg tcagagccga tcctgaatac cgtcacacac 1740 ttgaccggat cttgcctcgc atattcggac catcgactga cacagtcttc gatttcatcg 1800 aatcagcaat tacgtcatct tgggtatcca ttgatgcccg caaacgcaac ggtcgtgcca 1860 gaaagttcag aacagctttc atcaaccgtt tccacgaccc agaattcgca tacatgttcg 1920 gtatcaccgg caacggtatc gagagaatgg aaggaaaagt tacttccaac atcgcccaag 1980 aagtcgatta tctcatgaac ggcggcgacc ttcgcaattg cccaattctc cgcacactta 2040 aggcagcaga gagagaagaa acagtcactt ttatgtgcaa ggaaaaggtc ggctcactct 2100 acgccatcga cggaacagtt cgcgtattca aacggttcga aacaatcgat cttgcccagc 2160 ttggctggac ttcacatggt aaggtgatga aaccttatgc atttcgcgct ccagtcattc 2220 aaggaatgac catctgcagt acagcgtaca catcaacggc catcgacatc atcacaacag 2280 tctttggtcc cttacgcctc cgcgtaggat ccctttttga gtaaagctgt acgttgtggc 2340 cccgtaatac catccgtcaa gcatcacttc aatatcaatt accttagtat tctcaaacac 2400 aatggtaacg aatacacttt tgtcccagga tacggatggg tattacagga tgattatttg 2460 ttgaatgccg tcaaaatggt tggagaaggt gatctacccc ccaatcaatt accttatgac 2520 gatgatcttt tatttacata cgcaaaaatt ttactttacg attacatatc tcattttcca 2580 gaattcagac acaagaatcc acgcttatta acaagtgaaa cagaactaca actcttcccg 2640 ctcaaggaaa actcagctgc caggactaaa gcaaatttct acgctaggac actatggaac 2700 gaaacaactt cggacaagtc agctttcaaa ccaggaactt acaatgacac agtcgcaggt 2760 ctattaatgt ggcaacaatg tgctttgatg tggtctctac ccaagttaat tatcaacaag 2820 attattagcg gtgtttgtga tgcattaacc gaaaaggtct cactcacgct attaaaacgg 2880 atttctgatt ggttaaaaca actcgggtta gcctactcac ctatattccg tcttttcatt 2940 gaactcccta ctctattagg acgcggagca atcccaggcg atgctgcact agacatgaag 3000 cacagattaa cttacaaccc attgatgaca gtcgatgttc caaagacaca actacacgac 3060 ttaatttaca gacttctatc acgtaactac aacaatacaa aaattagcag tttcgagcac 3120 cacctagaag aacgtttact ttggtcaagg tctggaagtc actactaccc tgatgaacaa 3180 atcgatcagt tacttccccc acaacctacc agaaaagagt tcttagatat agtaacaata 3240 gactacatca aacaatgcaa acctcaagtt ttcatcagac agtcacgcaa actagagcac 3300 ggcaaggagc gattcattta caattgtgac acgatctcat atgtctattt tgattttgtc 3360 ctgaagctct tcgagtcagg atggcaagat agtgaagcaa tactgtcacc aggcgattac 3420 tcaagtgaat gtctccatgc taaaatctct ggttataagt acaaagctat gttggactac 3480 acagatttca attcgcaaca cacaatacaa agcatgcgtt tgatcttcga aaccatgaaa 3540 gagctactcc cacctgaagc atcttttgct cttgactggt gtatcgcctc gtttgacaac 3600 atgcaaacgt ctgatggtcg caagtggacc gccactctcc caagtggaca ccgcgccacg 3660 acattcatta acaccgttct aaattggtgt tacacacaga tggttggttt aaagtttgat 3720 agtttcatgt gcgctggtga tgacgtcatc ctgatgtcgc aagagcctat atcactagcc 3780 ccaatcctaa aatcacagtt caagttcaat cctagcaagc agagtactgg tacaagaggt 3840 gaattcttac gtaaacacta taccgaagca ggtgtcttcg cgtatccatg tcgagcaatc 3900 gcaagcttgg tgagtggaaa ttggttaagc gagtcattga gagacaacac cccaatttta 3960 gtcccgatac agaacggaat cgatagatta cgtagtagag caggtttact cggagttcct 4020 tggaagttag gcctctctga gctcattgag agagaggcta ttcctaagga cgttagcatg 4080 gccctactaa attctcacgc agcaggaccg ggactaatca ctcgtgacta cagttctttc 4140 acagttacac cgactccgcc caagctacat agttcgttag aatacactgc gacccgacac 4200 ggtctccaag atttatgtaa gcacgtgcca tggaaacaac tcacagcaaa tgagtgcaat 4260 aagttaggac agcaaattaa gaaaatgagc cacaggcatt gtagccagac aaagataacc 4320 tacaaatgtg tctacgaagt ttttaaacct agtggacttc ctacggtgtt atccgaggtc 4380 agccagtcag cgttgtcgct ggtgtggtgg caagcaatgc ttaaggaagc aatgcaggac 4440 tactctacaa agaagaagga tgcacatatg tacgcttgta acgcatgtac aagctccgtt 4500 agcggagatg cgtttttacg agcgacatca aaaatggctg gtgttttaat cactagcttg 4560 atttcttctt cttcataacg tacagtagaa aagtctctag agttgctcaa gacttataat 4620 gagccagttt ggtctcacta taccttc 4647 //