ID U01899; SV 1; linear; genomic RNA; STD; VRL; 5283 BP. XX AC U01899; XX DT 25-JAN-1994 (Rel. 38, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 11) XX DE Leishmania RNA virus 1-4 major capsid protein gene, complete cds, and DE putative RNA-dependent RNA polymerase gene, partial cds. XX KW . XX OS Leishmania RNA virus 1 - 4 OC Viruses; Riboviria; Totiviridae; Leishmaniavirus. XX RN [1] RP 1-5283 RX DOI; 10.1006/viro.1994.1149. RX PUBMED; 8122377. RA Scheffter S., Widmer G., Patterson J.L.; RT "Complete sequence of Leishmania RNA virus 1-4 and identification of RT conserved sequences"; RL Virology 199(2):479-483(1994). XX RN [2] RP 1-5283 RA Scheffter S.M.; RT ; RL Submitted (17-SEP-1993) to the INSDC. RL Scott M. Scheffter, Children's Hospital of Boston, Division of Infectious RL Diseases, 300 Longwood Avenue, Boston, MA 02115, USA XX DR MD5; 296a03886dd7e327d50cfb1b23e823fe. DR EuropePMC; PMC3597494; 23516364. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC5531682; 28715422. XX FH Key Location/Qualifiers FH FT source 1..5283 FT /organism="Leishmania RNA virus 1 - 4" FT /lab_host="Leishmania braziliensis guyanensis" FT /mol_type="genomic RNA" FT /clone="pBSLRV-7, pBSGAP, pBS190, pCR-D5" FT /db_xref="taxon:12530" FT stem_loop 1..37 FT /note="conserved in virus isolate LRV1-1" FT stem_loop 163..189 FT /note="conserved in virus isolate LRV1-1" FT stem_loop 214..231 FT /note="conserved in virus isolate LRV1-1" FT stem_loop 269..284 FT /note="conserved in virus isolate LRV1-1" FT stem_loop 403..443 FT /note="conserved in virus isolate LRV1-1" FT regulatory 447..453 FT /note="Kozak concensus site" FT /regulatory_class="other" FT CDS 450..2678 FT /codon_start=1 FT /product="major capsid protein" FT /note="ORF2" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q83100" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAB50027.1" FT /translation="MADIPNSDKIACGRKPMFCEIIKLANRKRLIFNTTDERVYDARLN FT YCSTADSTVQADCHIYWRLKLRRTDAVFEEYTGQGYSLDTAAYPQQYTDIIRGYYSKHV FT SSSLAANTQHCVNVVAMLRHAGACIAHYCMTGKIDCDIVSKKKHKNKEVVTLSNADSVS FT FVAHSALYLPSPLRASDPEIFNMLYLLGCACDASIAMDNISNTSGAAKYSMPHYNPLQL FT SHALHVTIFYMLSLMDSCGYGDDAVLALTSGLHSVTTVIAHSDEGGITRDALRELSYTQ FT PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP FT TTLTTKVATVDGRNSDLAAQMMHSATRFCDIFVENLSTFWGVVANPDGNASQALLHAFN FT IVACAVEPNRHLEMNVMAPWYWVESSALFCDYAPFRSPISSAGYGPQCVYGARLVLAAT FT NSLEFTGEPGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS FT RRSCNSAGHGTPTATCSHKTPNHDTLDEYIWGSTSCDLFHPAELTSYTTVCVRFRNYLS FT GADGDVRILNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLAQART FT FGALTIGDDIIRGFDKVEKIVKMHKSNNRLDQMPLIDVTGLCQPMIETSTVRASTPTRI FT DPNKLAAATARVELPLAPRCTSSLIPSSDTVPEPEPQVGETGDNGGCA" FT variation 727 FT /replace="t" FT variation 837 FT /replace="t" FT variation 1512 FT /replace="c" FT variation 1849 FT /replace="g" FT variation 2146 FT /replace="g" FT variation 2210 FT /replace="t" FT variation 2520 FT /replace="a" FT /note="clone pCRII-5'.F2" FT variation 2582 FT /replace="g" FT /note="clone pCRII-5'.F2" FT CDS <2605..5241 FT /codon_start=1 FT /standard_name="RDRP" FT /product="RNA-dependent RNA polymerase" FT /note="translation probably initiates at the 5' end of FT major capsid protein coding sequence and results in the FT expression of a fusion protein via a translational FT frameshift" FT /db_xref="GOA:Q83101" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q83101" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB50028.1" FT /translation="SHHLIQYPNQSLKLAKPVTTEAALDCFENVRRMISGFLNLSWLTV FT TSKERQHKSDSNYFYDYNLFFSQMPAIVFNQLKCCVKTQVDDAIKTILQKTKKVEPSKQ FT VERTLTLSVLNTFLGYLDLGRYVTQYTEQQSGPVAAKLLLTLLSSALIALVPAKSDPNL FT CQNKIPRHYYQLKAHVGAQKKVNLTAIEVIRGCQHECSVVYCEYMRYSAYFSGLYDDQV FT AAILLYATAAHGVQGFGARFSILWALTCVKAPDFADEINIYIKHRGMSGLLPQLVEMKC FT LLGRGVSEIDVELEARNRLNVKNLNMQKFNEDELRAAVRQVYSEEIRRSVSYPPICDFW FT SSRWLWAANGSHSRALEHAHPELATRKEGQAYRKAVMEQWQHNPMDRWDGTVYVTPSAK FT LEHGKTRLLLACDTLSYMWFEYALRPVERIWENSNVILDPGSIGNCGIAARVNKWRNSV FT RGQSFFAVDYDDFNSQHTLLSQKIVFEELFQHINCNMSWTRTLIDSFDSMELWVKGKRA FT GVVAGTLMSGHRATSFINSVLDRAYIICAGGHVPTSMHVGDDILMSCTFDHADNLIANL FT TENGIRLNASKQVFSKTSGEFLRVAHREHTSHGYLARVVSSAVSGNWVSDHTLNQQEAL FT MNATVCCRGILNRSLPGDKNPVVRVISRSVSKRTKVDERIIRLLLSGKACLRGGVVYGE FT QTNCIQVYKINCRVERLEEKLPPYKHATEDYLNNHLTGIEVMAVRQYGSDIADIMAQAS FT WKKSMSNESAEEISRLSLSRDKNLPCLYCITEDEVATLPVRYGLFTSYPILMMLKDRMP FT IKEALKLAITVGYRPQPNSDIELDLWGESKNSCAIEGILPYNEATSMAQKLPCGGVVIQ FT VIHNVYV" FT stem_loop 2623..2659 FT /function="possible role in translational frameshifting" FT /note="possible pseudoknot formed with adjacent FT nucleotides" FT variation 2652 FT /replace="c" FT /note="clone pCR-G2.R3" FT variation 2654 FT /replace="g" FT /note="clone pCRII-G2.R3" FT variation 2966 FT /replace="c" FT /note="clone pCRII-E1.T12" FT variation 2967 FT /replace="t" FT /note="clone pCRII-E1.T12" FT variation 3054 FT /replace="a" FT /note="clone pCRII-E1.T12" FT misc_binding 3796..3819 FT /bound_moiety="purines" FT /note="conserved in virus isolate LRV1-1" FT variation 3819 FT /replace="c" FT /note="clone pCRII-E1.T12" FT variation 4219 FT /replace="a" FT /note="clone pCRII-E3.3'" FT variation 4520 FT /replace="t" FT /note="clone pCRII-E3.3'" FT variation 5037 FT /replace="a" FT /note="clone pCRII-E3.3'" FT stem_loop 5206..5245 FT /note="conserved in virus isolate LRV1-1" FT stem_loop 5255..5280 FT /note="conserved in virus isolate LRV1-1" XX SQ Sequence 5283 BP; 1466 A; 1135 C; 1304 G; 1378 T; 0 other; gcgaattcaa acgagatgcc taagagtttg gattcgctag ctgtccggat ggtagtgtta 60 cctgtggtcc accacggtaa agcattaagg gctagcctta acctcactgg aattgaatga 120 aagtgggaga tcagtggcct ccaacggttg gactgactgg acggggggta atcgagtggg 180 agtcccccac atcctacatt tatgtagttc ctcacgatcc acagcaatcg tctggttgta 240 tccaggttac tgccgcgagc gtaagggagt gttttggcag acacaatcca atatgctgac 300 tacggtcggt gtggaggatc cgaaacgtaa gcaagtttct tgttactatt gatcaacagc 360 tacatcctac aacgacagct atcataccag ccatctttaa cccaagaatt ccacgtgaac 420 ataccttgag tatacaattc ttgagcaaaa tggctgatat accaaactct gataagattg 480 cttgcggtcg caagcctatg ttttgcgaga ttataaaact tgcaaacagg aagaggttga 540 tctttaatac aaccgacgag cgtgtgtatg atgcgcgatt gaactattgt tcaaccgcag 600 attctacagt gcaagcagat tgccacatct actggcgact caaactgcga cgcactgatg 660 cagtttttga ggaatacacc ggtcaagggt attcacttga cactgctgct tacccacaac 720 agtacactga tattatcaga gggtattaca gtaagcacgt atcaagctct ctcgctgcaa 780 acactcaaca ttgtgtgaac gttgtggcta tgctacgcca tgctggtgca tgtatcgcac 840 attattgcat gactgggaaa attgattgtg acattgtgag taagaaaaaa cataaaaata 900 aagaggtggt gaccttgagc aatgctgaca gtgtgagttt tgtggctcac tcggccttat 960 atctgccttc tcctttacgt gccagcgatc ctgaaatctt taatatgtta tatttgcttg 1020 ggtgcgcttg tgacgctagt attgctatgg ataacatctc aaatacaagc ggggccgcta 1080 agtactcaat gccccattat aacccgctgc agctgtctca tgctctgcat gtgacgatat 1140 tttacatgtt aagcttgatg gacagctgcg ggtatggtga tgacgccgtc ctggcactaa 1200 cttctggctt acattccgtg accacagtta ttgcacacag tgatgaaggt ggtattacac 1260 gtgatgccct acgggaactg tcatacacgc aaccttatgg tactatgcct gtcccgattg 1320 ccggttactt ccagcacatt aacgtgctgt ttaccacaca gcccgcttgg gatcaatttg 1380 ctgggatttg ggattatgtt atcttggcga ctgctgctct ggtacatcta tctgatcctg 1440 gaatgactgt caacgatgtt acttacccta cgactctgac aactaaagtg gcaacggttg 1500 atgggcgtaa tagtgacttg gctgctcaga tgatgcacag cgcaacccga ttctgtgaca 1560 tattcgtgga gaatttaagc acattctggg gcgttgttgc taaccctgac gggaacgcaa 1620 gccaggctct actccacgct ttcaacatcg tggcttgtgc tgtagagccg aacagacatc 1680 tggagatgaa tgtgatggcc ccgtggtatt gggtagaaag ttctgctttg ttctgtgatt 1740 acgcgccatt tcgatcaccg atatcatccg caggctatgg ccctcaatgt gtctatggtg 1800 caaggctggt acttgctgct acgaactcgc tagagtttac aggtgaacca ggtgattatt 1860 ctgcataccg ttttgagtgg acaacaatgc gccacaaccc attatttaac atccttaaca 1920 aacgtgttgg tgatggtctt gccaatgttg atttcaggtt acgccccttc aatgaatggt 1980 tgttggaggg tcaaccaagt cgtcggagtt gtaactcagc tggccacggc acgcccacgg 2040 ccacatgttc tcacaaaacc ccaaaccacg acacgctaga tgagtacatc tggggcagta 2100 cgtcatgtga cctgtttcac ccggcggagt tgacttctta cacaaccgtg tgcgtcagat 2160 tccgcaacta cctatcgggt gctgacggtg atgttagaat actgaatacg ccgactaggg 2220 aagtaatcga gggaaacgtg gtcacaagat gtgacgggat aagatgtctg gacagtaata 2280 aacgaataca gcatgtccct gaagtggcaa ggcgctactg catgatggcg cggtacctcg 2340 cacaagcccg tacttttgga gcactaacta ttggggatga tattatacgt ggttttgaca 2400 aggttgaaaa aatcgtcaaa atgcataaga gtaataatag attggatcaa atgcctttaa 2460 ttgatgttac tggattatgt cagccaatga ttgaaacaag tacagtgcgc gcctcaacac 2520 cgacgcgtat tgatcctaac aaacttgcgg ctgctacggc ccgggttgag ttaccactag 2580 ccccacgttg tacatcttct ttaatcccat catctgatac agtacccgaa ccagagcctc 2640 aagttggcga aaccggtgac aacggaggct gcgcttgatt gttttgaaaa tgtgcgacgt 2700 atgattagtg gtttcttgaa tctgtcgtgg ctgacagtaa catctaaaga aaggcaacat 2760 aaaagtgaca gtaattattt ctatgattat aatctcttct tttcccagat gccagcgata 2820 gttttcaacc aactaaaatg ctgtgtaaag acacaagttg acgatgccat aaaaactatt 2880 ttgcaaaaaa cgaagaaagt tgaacctagt aaacaggttg aaagaacgct cactctctcc 2940 gtgctaaaca cgttcctggg gtacctggac ttgggtaggt atgtaacaca atacacagag 3000 cagcagtcag ggccagttgc ggcaaaactg ctcttgacac tcctctcgtc agcgctaatt 3060 gcattggtcc ctgcgaaatc agaccccaat ttatgtcaga ataagatacc acgccattat 3120 tatcagctta aggcgcatgt tggggctcag aaaaaagtaa acttaacggc aatcgaggtg 3180 atcaggggtt gccaacacga gtgcagtgtc gtttattgtg agtatatgcg ttacagtgct 3240 tacttttcgg gcctgtatga tgatcaggtc gctgccatcc tgttatatgc tacggcagca 3300 cacggtgtcc aaggatttgg ggctcgattt agtattctgt gggcgcttac gtgcgttaag 3360 gcacctgatt ttgcggacga aattaatatt tatatcaagc acagaggtat gtcaggacta 3420 ctacctcagc tagtagagat gaaatgcttg ctaggtcgtg gggtgagtga gattgatgtc 3480 gaacttgagg ctagaaacag actaaacgta aagaacctga atatgcagaa gttcaacgaa 3540 gacgaactac gagcagccgt tcgtcaagtt tactctgaag aaatcaggag gtctgtttcg 3600 tacccgccga tttgtgattt ctggtcgtca cgttggctgt gggctgcaaa tggctcgcac 3660 tcccgcgctc tggaacatgc acatcctgag cttgcaacta ggaaagaagg gcaggcctac 3720 agaaaagcgg taatggaaca gtggcagcat aatcccatgg accgctggga tggcacagtg 3780 tatgtcaccc ctagtgctaa gcttgagcat ggaaagacaa gactactgtt ggcatgtgac 3840 acactgtcgt atatgtggtt tgaatatgcc ttacgacccg ttgaaaggat ctgggagaac 3900 agtaatgtca tccttgaccc tgggagtatc ggcaactgcg gtattgcagc cagagttaat 3960 aagtggcgaa acagtgttcg tggacagagc ttctttgcgg tagattatga tgacttcaat 4020 tctcaacata cgttgctgtc acagaagatt gtgtttgagg aattgtttca gcatatcaac 4080 tgcaatatgt cctggacccg aacattaata gattcttttg acagcatgga gttatgggtt 4140 aaagggaaaa gagctggtgt ggtggcaggg acgctgatga gcggtcatag agctaccagc 4200 ttcataaact ctgttctcga cagggcatac attatatgtg caggcggcca cgtacccacg 4260 tctatgcatg ttggtgatga catcttgatg tcatgtacat ttgaccatgc cgataatcta 4320 atagctaatc ttacggagaa tgggattagg ttaaatgcta gtaaacaagt ctttagtaaa 4380 actagtgggg agttcctacg agtggcacac cgtgaacaca caagccacgg gtatcttgcg 4440 agagtagtga gcagtgcggt atcggggaat tgggtgagtg atcacaccct caatcagcaa 4500 gaggccctca tgaatgctac agtatgttgc agaggaatcc tcaataggag cttaccaggt 4560 gacaagaatc ctgtggtcag ggtaatatca cgcagtgtaa gcaagagaac taaagtagat 4620 gaacgaataa ttcggctgtt actgagtggg aaagcgtgtc ttagaggtgg tgtcgtgtac 4680 ggtgaacaaa ctaactgcat ccaagtatat aagataaatt gcagggttga gcgcctagag 4740 gagaagctac ccccatacaa acatgcaact gaagattact tgaacaatca tctgacaggt 4800 attgaagtaa tggcagtcag acaatatgga tcggacattg ctgatatcat ggcccaggct 4860 agctggaaga aatccatgag taatgagagt gccgaagaaa tatctcgtct gtcactgtca 4920 cgcgacaaaa acctgccatg cctgtattgt atcacagagg atgaggttgc aacactgccg 4980 gttcgctacg ggttgttcac gagctatcca atcctaatga tgttgaagga taggatgccc 5040 atcaaagaag ccctcaaact agccataact gtaggttaca gaccccaacc taacagcgac 5100 atagagctag atttgtgggg tgagagcaaa aattcatgtg caattgaagg aatacttcct 5160 tataatgaag cgacttcaat ggcccaaaaa cttccttgtg gtggagttgt tatacaagta 5220 atacataatg tatatgtata aggacgcacc attcggaata tggcaagagt gccataaact 5280 atc 5283 //