ID S73580; SV 1; linear; genomic RNA; STD; VRL; 7059 BP. XX AC S73580; XX DT 22-MAY-1995 (Rel. 43, Created) DT 01-SEP-2004 (Rel. 81, Last updated, Version 3) XX DE putative polymerase...capsid protein [potato aucuba mosaic potexvirus PAMV, DE Genomic RNA Complete, 6 genes, 7059 nt]. XX KW . XX OS Potato aucuba mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC GenBank staff at the National Library of Medicine created this entry [NCBI RC gibbsq 156002] from the original journal article. RP 1-7059 RX DOI; 10.1007/BF01310031. RX PUBMED; 7979982. RA Xu H., Leclerc D., Leung B., AbouHaidar M.G.; RT "The entire nucleotide sequence and genomic organization of potato aucuba RT mosaic potexvirus"; RL Arch. Virol. 135(3-4):461-469(1994). XX DR MD5; 20f59a1bf7d456f1fa55d72ba8f58a7c. XX FH Key Location/Qualifiers FH FT source 1..7059 FT /organism="Potato aucuba mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12182" FT gene 83..5023 FT /gene="putative polymerase" FT CDS 83..5023 FT /codon_start=1 FT /gene="putative polymerase" FT /db_xref="GOA:Q86820" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q86820" FT /protein_id="AAB32330.1" FT /translation="MSRLKNVLEQIRDPSVITAINESAYEAIRPVLKEALVNCPYALTK FT EEGDELEGMGISINPYASQVHTHAAAKAIENRMLEVVGHHLPKEPVTLMSLKRSKLRFL FT RRGPQMNDHFVNPIVEAKDLTRYENADRAESYYYCSTSVAYLSDSLHFLSLEELAHIFT FT SSNKLETLLATVVLPVEACQKRPSLYPTVYTINYSDDGFCYLPGNHAGGAYYHNYSTLQ FT WLKVDSIECVDKLAYAEPFTLTFQLIESLGANHLFIISKKNLITPKIRSFKKDSHVLLP FT QIFHPKQRNANKPIKKTQAMQLYLYCKSVKEATMRDIFAKIRQIVPTQELDLYDPDELT FT HIANYFYVVSHLSCVNDHQSLLKAGFFQKLFIPIKNYLRELSETVNGKTEFSQVLAALS FT WTTLLTTWSLRRCLKYANCRSVAIARHLGTTAFHQHKRNRQRLHGVELVGPEDETALVV FT RENQTVELNSDNQSVSSMASTELAEVRSVASTLTFPTSTSATSLVLDDQLWAELLLRKA FT GQKRVVNVNNLGVPFERDRKKHAAQWVPTGMENLMNEVANCLQNPINLGFCQELPANYS FT SSWHTYQNLLITSDLVCVISDAPAMLELKTRKKKKQTVMPIFPGQCNLISGLQIRDCRF FT RFVSNAACRIVELMFVESDVPRKNRSWEVTTTESDSDAQSDQPKQEPIDEVDFLNGILG FT NNVNSGPTLSEPNATEDTVNQSDTQRKMVAASQIAVEVTPNPSFRRHTVIAENAQDVKS FT PASLAVTDSTTLPWAAWLDVLKQHGFRGLDLQKDPYDKIIYPVDKVQILPHAEWDTVPD FT LNLRVALQQLKRFPIKIKVNHQRAAAYGSDIKNKRTGKLLLDQPKQWRESFAYKMINRD FT LERVVVVIHGAGGCGKSRFLQEWLNNHEDMNSVCTIVCPTIELRNDWSKKIPKLEPTNI FT KTFEKAMLQNAKKIVIFDDYSKLPAGFIEAYMIHHNSVDLFILTGDTKQSEHHERNREA FT YISTLEPATEVYSQHCEYYLNCTHRNVKALANKLGVYSEVEGDLIVHVKKVPLKGKRLP FT MLVPSNDKSDALVDLGNVSMTYAGCQGLTCQMIQVLIDNHTQFCSEQVLYTCLSRAVNE FT IAFINTGPNSEDFWSKLDSTPYLKAFIDNYRDEKTERFLSTPAPAEPQEPELPKTHLPV FT APNHLLENHISNLREKHDREIFNKNFGYSNAIQGAGVTELFQHQQAKDESLLWATIEAR FT LAISSPENNWKEFVLKKDIGDILFFNYHALMELPDESPPFEPRLWAVCKAEVTNTYMAK FT PMANLINAAQRQSPDFHPEKIALFLKSQWVKKVEKLGCIKVKPGQTIAAFMQETVMVYG FT TMARYLRKKRQEFQPRRVFINCEKTPEDFGAFIKDNWNFDRKAHTNDFTAFDQSQDGAM FT LQFEVAKCRFFNIPEDVIEGYIHIKLNAHIFLGTLSIMRLSGEGPTFDANTECSIAYTA FT TRFHIPKDSTHVYAGDDMAVDCDLVEKKSFAKLAKELKLTSKTIKPNQRKGDWAEFCSW FT MITPKGIVKNPVKLNASLELAAALKKSNEVARSYALECKFAFDLRDDVYSIFTEQEMEH FT HWSCVRQLLFLKQSEVLNTHKDMLTLKPSFDDPPGEARLLKEGRPRKGRRESLRFSHPT FT HSRRLSYL" FT gene 3630..3848 FT /gene="8 kda polypeptide" FT CDS 3630..3848 FT /codon_start=1 FT /gene="8 kda polypeptide" FT /db_xref="UniProtKB/TrEMBL:Q86821" FT /protein_id="AAB32331.1" FT /translation="MTGKSSTRTSGIVTPSREQASQNYFSTNRQKMSLCYGQPLKLDWP FT SQVLKTTGKSSFSRKTSVIFYSSITMP" FT gene 5031..5729 FT /gene="26 kda polypeptide" FT CDS 5031..5729 FT /codon_start=1 FT /gene="26 kda polypeptide" FT /db_xref="GOA:Q86822" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q86822" FT /protein_id="AAB32332.1" FT /translation="MEYSFLVRLLDHYGFERTTEKIVPGQPIVVQGIAGCGKTTLLRNF FT HQEYPSIPIYSCFPQKISENSEELQLLAKARFTASAILDEYLAHKFDYQKCLAVFADPL FT QYSHLGALRPHYQTSKHIGLVLVLLILSLRNWIPIESLLSEEKTILKECDPYATDPIGQ FT IIASNHEVLNYIKPQAVEAICSCEVLGKEFQTVSCYYQSHKLEDSAEERRGLYIAISRA FT KSAVLLFDLD" FT gene 5729..6064 FT /gene="12 kda polypeptide" FT CDS 5729..6064 FT /codon_start=1 FT /gene="12 kda polypeptide" FT /db_xref="GOA:Q86823" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q86823" FT /protein_id="AAB32333.1" FT /translation="MPGLTPPKDYTASVKVLAIAVLRFATIFAIRANHQPQVGDSSHSL FT PFGGHYKDGTKEVLYYPQNSKVALKGFDNKIVAFIVCLSILIYVSLPRLFASNNVCRTC FT NSSTVAQ" FT gene 5991..6212 FT /gene="8 kda polypeptide" FT CDS 5991..6212 FT /codon_start=1 FT /gene="8 kda polypeptide" FT /db_xref="GOA:Q86824" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q86824" FT /protein_id="AAB32334.1" FT /translation="MYRYLDCLLVIMCVVLAIVLLWPNNYHPCVVNNSGAEIHIHNCAE FT PNKIISSIQSHLGTGLSFHLKVLINIVN" FT gene 6232..6981 FT /gene="capsid protein" FT CDS 6232..6981 FT /codon_start=1 FT /gene="capsid protein" FT /db_xref="GOA:Q86825" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q86825" FT /protein_id="AAB32335.1" FT /translation="MVDSKKTETPQVIDASKKTESSKTSHAGRVQFLSAPKQFSASDVR FT SSPTLTDLDEIAYEVRTTSIASPAEIEAVSQLWIMNTEIPADKVALIAIDMARAYADVG FT ASRKAVLLDAPALAPTVARSRLAQLMAGAGISPRQFCSYYAKIVWNLMLHKNEPPANWA FT KIGFKEDYKFAAFDFFDAVDSPAALEPSQWVRHPTDKERAAHGVVKWASLSRERLQEGT FT SITTVAELNKGHLGGYNNLPALMAPPS" XX SQ Sequence 7059 BP; 2156 A; 1577 C; 1503 G; 1823 T; 0 other; gaaaacaaaa caacaaacaa caaagacgct taacacatat ccagcttcaa agccgacatt 60 aaattgtcaa tttgtcgtta gaatgtctcg gttaaagaac gtcttagaac aaataagaga 120 cccctcggtc ataactgcca tcaatgagtc agcctatgag gcaatcagac cagtccttaa 180 ggaagcactc gtcaattgtc cgtacgcact caccaaagaa gaaggggatg aactagaagg 240 aatgggaatt agcataaatc cgtacgcctc acaagtacat acacacgcgg cggctaaagc 300 cattgagaac agaatgctcg aagtcgtagg gcatcatcta cctaaagaac ctgttacttt 360 aatgagcctt aaaagaagta aactgaggtt tctgagacgt ggcccacaaa tgaatgacca 420 ctttgtcaac ccaatagtgg aagctaaaga tcttactcgc tacgagaatg ctgatcgtgc 480 agagtcgtat tattactgct ctacaagtgt tgcctatctg tctgacagtc tacacttcct 540 atcactggaa gaattggcac acatcttcac atcctcaaac aagcttgaaa cacttttagc 600 taccgttgtt ttgcctgtcg aagcttgtca aaagagaccg tctctatatc ctaccgttta 660 cactataaac tactcagacg acgggttttg ctacctccct ggaaatcatg caggcggagc 720 ttattaccat aactactcca ccctacaatg gcttaaagtt gattccatcg agtgcgttga 780 taaacttgcc tacgctgaac ctttcactct aacttttcaa cttattgaat cgctaggcgc 840 aaaccacttg tttatcattt ccaagaagaa tctgatcact ccaaagatta gatcctttaa 900 gaaagatagt catgtgcttt tgcctcagat tttccaccct aaacagagga acgctaataa 960 gccaattaag aagactcaag ccatgcaact gtacctatac tgcaaatccg ttaaggaagc 1020 cactatgcgg gacatctttg ctaagattcg acaaatagtg cctacccaag agctggattt 1080 gtatgatcct gatgaactaa ctcacattgc gaactacttc tatgtagtat cccatctgag 1140 ttgtgtcaat gatcatcaat cactacttaa agctgggttc ttccaaaaat tattcattcc 1200 catcaaaaat tatttgagag aactttctga aacagttaat gggaagactg agttctctca 1260 agtccttgct gctttgtcat ggaccacctt acttacgacg tggagcctga gaaggtgtct 1320 gaaatatgct aactgtagaa gtgtagctat tgctagacat ttgggtacca ctgctttcca 1380 ccagcacaaa aggaatagac agaggctaca cggcgtggaa cttgtaggac cagaggatga 1440 aactgctctc gtcgtaaggg agaaccaaac tgtagagcta aattctgaca atcaatctgt 1500 gagcagcatg gccagcacag aattagcaga agttagaagc gtagcatcaa cactgacttt 1560 ccccacctct acttcggcaa ccagcttagt tttagacgac caattatggg cagaactgct 1620 gttacggaaa gctggccaaa agagggtcgt taatgttaac aaccttggtg ttccattcga 1680 aagggatagg aaaaaacatg ctgcacaatg ggtccctact ggtatggaaa acttgatgaa 1740 tgaagtcgca aattgcttac aaaacccaat taatctaggc ttttgtcagg aactccctgc 1800 gaattattca agcagctggc acacctacca gaatctgctg attacatcag atttggtctg 1860 tgtcatctct gatgcaccag caatgctcga gctcaaaact cggaagaaga aaaaacaaac 1920 tgtgatgcct atatttccgg gtcaatgcaa tttaattagt ggtttacaaa ttagagattg 1980 tagatttcgt tttgttagta atgctgcttg taggatagtt gaactaatgt ttgtggaaag 2040 cgatgttcca agaaagaatc gcagttggga agttacaacg acagagagtg attctgatgc 2100 tcaaagtgat cagcccaaac aagagcctat tgatgaagta gacttcttga atggcattct 2160 aggaaataat gtgaactctg gtcccaccct ttctgaacca aatgctacag aggatacggt 2220 caaccagtct gacacacaaa gaaagatggt ggctgcatcg caaattgccg ttgaagtaac 2280 accaaacccg agttttagaa gacacactgt catagccgaa aacgcacagg atgtgaagag 2340 tccagcctcc ttagccgtta ctgactctac cacacttcca tgggcagcat ggcttgatgt 2400 gcttaaacag cacggttttc gtggtttgga tttgcagaag gatccctatg acaaaatcat 2460 ctaccccgtt gataaagtgc aaatcttacc ccatgcggag tgggacacag tgccagactt 2520 gaacctcaga gtggcattac aacaacttaa aaggttccca atcaagatta aagtcaacca 2580 ccagagggca gccgcttatg gatcagacat caagaataag cgcactggca aattgctact 2640 ggaccaacca aaacaatggc gtgagtcttt tgcttacaag atgatcaatc gtgatttgga 2700 aagagttgtg gttgtgatcc atggtgctgg tggttgtggc aagtccagat ttcttcagga 2760 gtggctcaac aaccatgagg atatgaatag tgtctgcaca attgtatgcc ccacaattga 2820 gttaaggaac gactggtcaa aaaaaattcc caagttagaa cctaccaaca tcaaaacatt 2880 cgagaaggca atgctccaaa atgctaaaaa aattgtcata tttgatgatt acagcaagct 2940 cccggcagga ttcattgagg cttacatgat ccaccacaac tctgtagatt tgttcatact 3000 cactggtgat acaaagcaat ctgaacacca tgaaaggaat cgtgaggctt atatttctac 3060 actggagcca gccacagagg tctactctca acattgtgaa tattacttga actgtacaca 3120 taggaatgtc aaagctttgg caaataaact tggagtatat tcagaagtgg aaggggattt 3180 gatcgtgcat gtaaagaaag ttccactgaa aggcaagagg ctgcctatgt tggtcccatc 3240 taacgacaag agtgacgctt tggtagatct tgggaatgtg tctatgacat atgctgggtg 3300 tcaagggctt acttgccaaa tgatccaagt tctgatagat aaccacactc aattttgctc 3360 tgaacaggtt ctctacacct gcctttcccg tgctgtaaat gaaattgctt ttatcaatac 3420 tggcccaaat tctgaggact tttggagcaa attggactcc actccatact taaaggcttt 3480 catagacaac taccgggatg agaaaacaga gcgtttcctg tccactcctg cccctgctga 3540 gcctcaagag cctgaactac caaagacaca cttgccggtg gcacctaatc accttttaga 3600 gaatcacatc tctaacttga gggagaagca tgaccgggaa atcttcaaca agaacttcgg 3660 gtatagtaac gccatccagg gagcaggcgt cacagaacta tttcagcacc aacaggcaaa 3720 agatgagtct ttgctatggg caaccattga agctagactg gccatctcaa gtcctgaaaa 3780 caactggaaa gagttcgttc tcaagaaaga catcggtgat attctattct tcaattacca 3840 tgccctaatg gaattgccag atgaatcacc accattcgaa ccaaggctgt gggctgtgtg 3900 taaagctgaa gttaccaata cttacatggc taaacctatg gctaatctca tcaatgcagc 3960 tcaaagacag agcccagatt tccaccctga gaaaattgca ctcttcctga aatcgcagtg 4020 ggtgaagaaa gtggagaagt tgggttgcat caaagtcaag ccaggacaaa ccattgccgc 4080 tttcatgcag gaaacagtaa tggtttacgg cactatggcc aggtacttaa ggaagaagag 4140 gcaggagttt caaccaagga gagtgtttat caactgtgag aaaactcctg aggactttgg 4200 ggcgttcatt aaagacaatt ggaactttga caggaaagcc cacacaaacg acttcacagc 4260 ttttgatcaa tcacaagatg gcgccatgct acaatttgaa gttgctaaat gtcggttttt 4320 caacattcca gaagatgtca ttgaaggtta catccatatc aagctgaacg cccacatttt 4380 cctcggcacc ttgagcataa tgcgactatc tggagagggt cccacctttg atgctaacac 4440 tgagtgttct attgcttaca ctgccacccg gttccatata ccgaaagaca gcactcatgt 4500 ttatgctggg gatgatatgg cggtggattg tgatttagta gaaaagaaat cttttgccaa 4560 gttagctaaa gagttaaagc tcacttccaa gaccatcaag ccaaatcaga ggaaagggga 4620 ctgggccgaa ttttgcagtt ggatgattac gcccaaaggt atcgtcaaaa atcctgttaa 4680 gctcaatgct tcattagaat tggcagcagc actgaagaaa agcaatgagg tggcccgatc 4740 ctacgctcta gaatgtaagt ttgcctttga tttgcgggat gatgtatatt caatctttac 4800 tgaacaagaa atggagcatc attggagttg tgttcggcaa ctgcttttcc tgaaacaatc 4860 tgaagtgctc aacactcaca aagatatgct tactttaaaa ccttcatttg atgatccccc 4920 aggcgaagca aggctgttaa aagaagggag gccaaggaaa ggaaggcgag agtcgttgag 4980 attctcccac ccaactcatt ctaggaggtt aagttacctt taaatgcgaa atggaatatt 5040 ctttcttagt tagacttctt gatcactacg gatttgaaag gaccactgaa aagatcgtac 5100 caggacaacc cattgtagtt caaggcattg caggctgtgg caaaaccacc ttgctgagaa 5160 atttccacca agagtaccca agcattccta tatactcttg cttcccacaa aagatctcag 5220 aaaatagtga agagttgcag ttgttggcaa aagcaagatt taccgcaagc gcaatactgg 5280 atgagtactt ggcgcataag tttgattacc agaagtgttt agctgtcttt gctgacccct 5340 tacagtactc acacttagga gctttgaggc cacactacca aacatcaaaa catataggtt 5400 tggtcctagt attgctaatt ttgtcactga gaaattggat acctatagaa agtctactgt 5460 ctgaagaaaa gactattctt aaagagtgtg atccatacgc caccgaccca atcggtcaaa 5520 tcattgccag caatcacgag gtgctcaact acatcaaacc tcaagcagtg gaagctatct 5580 gttcttgtga agttttgggt aaggaattcc aaactgtcag ctgctactat caaagccaca 5640 aacttgaaga ctcagctgag gaaagaagag gcttatacat cgccatctca cgagctaaaa 5700 gtgcagtgtt gctgtttgat ttagactgat gcctggcctc acgccgccca aagactacac 5760 tgcctcagtc aaagtgttag caattgcagt cctccgattc gccactatat ttgccattag 5820 agcaaatcac cagccacaag tcggggactc cagccactca ttgccattcg gtggacatta 5880 caaagacgga accaaagaag tcttatatta cccacagaat tccaaagtag cattgaaagg 5940 ttttgataat aaaatagttg catttattgt gtgtttaagt attttaattt atgtatcgct 6000 acctagattg tttgctagta ataatgtgtg tcgtacttgc aatagttcta ctgtggccca 6060 ataattatca tccatgtgtc gttaacaata gtggggctga aatccatatt cacaattgtg 6120 cagagccgaa caagatcatc tcttctattc agtcgcacct tggaacgggg ttaagtttcc 6180 atttaaaagt gttaattaat attgtcaatt agtattacgg tttgaataaa tatggttgat 6240 tctaagaaaa ctgaaactcc tcaagtgatc gacgccagca agaagactga aagttcaaaa 6300 acctcacatg ctggacgcgt tcaattcttg tctgccccta agcagttcag tgcgtcagat 6360 gtacgatcaa gccccactct gacggaccta gatgagattg cttacgaagt caggacgaca 6420 agtattgcct cccctgctga aatagaggct gtcagccaac tctggattat gaacactgaa 6480 ataccggcag acaaagtggc tctcattgcc attgacatgg ctcgtgctta tgccgacgtt 6540 ggggctagcc gtaaagcggt actgcttgac gccccagcct tggcgcccac tgtcgccaga 6600 agccggctcg ctcagcttat ggcgggtgcg ggcatcagtc ctaggcaatt ctgctcatac 6660 tatgctaaga tagtctggaa tctcatgctt cacaagaacg agcccccagc caactgggca 6720 aaaattggct tcaaagaaga ctacaagttt gctgcatttg atttcttcga tgccgttgat 6780 tctccagcag cacttgagcc aagccagtgg gtacgtcatc ccacagacaa agaaagagcc 6840 gcccatggcg ttgtcaagtg ggcttcactt agccgggagc gtttgcaaga aggcacttct 6900 atcactacag tggcagaact caacaagggc cacctaggtg gttacaacaa tttgcctgct 6960 ctcatggcac caccatccta atcgtcggaa acttaattac gacgggagtt tcaacagttt 7020 ctttctccct aatcccctga ttaaagtggt ttaaataaa 7059 //