ID M92355; SV 1; linear; genomic RNA; STD; VRL; 5284 BP. XX AC M92355; XX DT 01-JUL-1992 (Rel. 32, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 10) XX DE Leishmania RNA virus 1-1 putative coat protein and RNA dependent RNA DE polymerase genes, complete cds. XX KW . XX OS Leishmania RNA virus 1 - 1 OC Viruses; Riboviria; Totiviridae; Leishmaniavirus. XX RN [1] RP 1-5284 RX DOI; 10.1073/pnas.89.18.8596. RX PUBMED; 1382295. RA Stuart K.D., Weeks R., Guilbride L., Myler P.J.; RT "Molecular organization of Leishmania RNA virus 1"; RL Proc. Natl. Acad. Sci. U.S.A. 89(18):8596-8600(1992). XX DR MD5; 141ce82397117f6ef5ebd6919da01cd0. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC5531682; 28715422. DR EuropePMC; PMC6356713; 30585188. XX FH Key Location/Qualifiers FH FT source 1..5284 FT /organism="Leishmania RNA virus 1 - 1" FT /mol_type="genomic RNA" FT /db_xref="taxon:58103" FT repeat_region complement(1..3) FT /rpt_type=TANDEM FT /note="UCA repeat; putative" FT variation 1 FT /replace="c" FT stem_loop 2..34 FT /note="putative" FT CDS 15..233 FT /codon_start=1 FT /product="ORF1" FT /note="probably does not have protein coding function" FT /db_xref="UniProtKB/Swiss-Prot:Q83096" FT /protein_id="AAB50022.1" FT /translation="MPMSLDSLAVGMVALLVDYYSKALRASLNSTGIDRRWGDQWPSTV FT ELTGRGVIEWESPTFCICSSSRSTAIV" FT CDS 448..2673 FT /codon_start=1 FT /product="putative coat protein" FT /note="ORF2; putative" FT /db_xref="GOA:Q02358" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/Swiss-Prot:Q02358" FT /protein_id="AAB50023.1" FT /translation="MSDTPNSDKVACGRKPMFCEIIKLANRKRLILDTTGERVYDARIN FT YCSTADATVQADCHIYWRLKLRRTDAVFEEYTGQGYALDTASYPQQYADIIRGYYSKHV FT SSALAANTQHFVNVLAMLRHAGACIAHYCMTGKIDFDILSKKKHKNKEVVTLSSADSLS FT FLPHSALYLPSALRASDPEIFNVLYLLGCACDASIAMDNIANTSGAAKYAMPHYNPLQL FT SHALHVTIFYMLGLMDSCGYGEDAVLALTAGLHSVTTVIAHSDEGAITRDALRELSYTQ FT PYGTMPVPIAGYFQHINVLFTTQPAWDQFAGIWDYVILATAALVHLSDPGMTVNDVTYP FT TTLTTKVASVDGRNSDIAAQMMHSATRFCDIYIENLCLFWGVVANPDGNASQALLHAFN FT VVACGTEPNRHLEMNVMAPWYWVESSALFSDYSQFRSPISSAGYGPQSIYGARLVLAAT FT NSLEFTGEAGDYSAYRFEWTTMRHNPLFNILNKRVGDGLANVDFRLRPFNEWLLEGQPS FT RRSCDAVGHGTPTATCNHKTPNRNTVDEFIWGSTSCDLFHPAELTSYTAVCVRFRNYLS FT EADGDVRVLNTPTREVIEGNVVTRCDGIRCLDSNKRIQHVPEVARRYCMMARYLQARTF FT GALTIGDDIIRGFDKVDKVVKMHKSNNRLGQMPLIDVTGLCQPMIETSTARASMTTRID FT PNRLAAATARIELPLAPRCTSSLIPSSDAVPEPEPHVGEPGNGSGCA" FT variation 452 FT /replace="t" FT /note="probable subcloning error" FT variation 1931 FT /replace="g" FT variation 2102 FT /replace="a" FT variation 2102 FT /replace="t" FT variation 2208 FT /replace="g" FT variation 2561 FT /replace="c" FT CDS 2612..5236 FT /codon_start=1 FT /standard_name="RDRP" FT /product="RNA dependent RNA polymerase" FT /note="The RDRP (ORF3) is possibly expressed as a fusion FT proteinwith the coat protein (ORF2) due to a +1 frameshift FT in theoverlap between ORFs; ORF3; putative" FT /db_xref="GOA:Q02382" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/Swiss-Prot:Q02382" FT /protein_id="AAB50024.1" FT /translation="MQCPNQNHMLVNRAMVVAALDSFEDARRIISGVLDLSRLTNTSVK FT GQHTNDTNYFSRYSNFFSQMPAIILNQLKCCIKAQVDDAVKMVLQKAKKVEVSKPVEKM FT LTFTTLNTYLGYPESTGCVMEYTEEQSGPIAAKLLITLLSSTLNAMVRPKSDPNISQNK FT IPRHYYQLKVHVGAQKKVNLTAIEVIRGCQHECSVVYCEFVRYSAYFAGLYDDQVAAIL FT LYAVAAHNVQGFGARFCVLWALMCVRIAGFADDINIYIKHRGMSGLLPQLVEMKCLLGR FT GVNEIDVETEARRRLDVGSLSMQRLDENELRAAVRLIYSEELRRPVTYPLICDFWSSRW FT LWAANGSHSRALEHAHPELATRKEGQAYRKAVMEQWQHNPMDRWDGTVYVTPSAKLEHG FT KTRLLLACDTLSYMWFEYALRPVERIWENSNVILDPGSMGNCGIATRINGWRNGMPGQS FT FFAVDYDDFNSQHTLMSQKIVFEELFHHIGYNASWVKTLVDSFDSMELWIKGKCAGIMA FT GTLMSGHRATSFINSVLNRAYIICAGGHVPTSMHVGDDILMSCTLGHADNLIANLNRKG FT VRLNASKQVFSKTSGEFLRVAHREHTSHGYLARVISSAVSGNWVSDHTLNQQEALMNAI FT VCCRGILNRSLPGEKNPVVRVISRSVSKRTKIEEKTIRLLLSGRACLKGGVVYGEQTNY FT IQVYRINCRVERSEEKLPPYRHATEDYLNNHLADIEVMAVRQYGSDIADIMAQASWKKS FT MSTEGAEDVSRLSLQRDKTLPCLHCITEKETSLLPVRYGLFSSYPILMMLKDRIPIKEA FT LKLAVTIGYRPQPNSDLELDLWGESNNSCAIEGVLPYNEATSLAQKLPCGGVVIQVIHN FT VYV" FT stem_loop 2618..2653 FT /note="possible pseudoknot involving nts 2655-2656, FT 2660-2663, and2664-2668. May be involved in possible FT translationalframeshift; putative" FT variation 2826 FT /replace="t" FT variation 4168 FT /replace="a" FT variation 4192 FT /replace="a" FT variation 4348 FT /replace="g" FT variation 4617 FT /replace="g" FT /note="probable subcloning error" FT variation 4690 FT /replace="c" FT variation 4710 FT /replace="c" FT variation 4731 FT /replace="t" FT variation 4797 FT /replace="g" FT variation 4894 FT /replace="c" FT variation 5072 FT /replace="c" FT variation 5141 FT /replace="t" FT stem_loop 5201..5240 FT /note="putative" FT stem_loop 5251..5276 FT /note="putative" FT repeat_region 5275..5284 FT /rpt_type=TANDEM FT /rpt_unit_range=5275..5277 FT /note="putative" FT variation 5280 FT /replace="t" XX SQ Sequence 5284 BP; 1466 A; 1113 C; 1341 G; 1364 T; 0 other; tgaattcaaa cgagatgcct atgagtttgg attcgctagc tgttgggatg gtagcgttac 60 ttgtggacta ctacagtaaa gcattaaggg ctagccttaa ctccactgga attgatagaa 120 ggtggggaga tcagtggcct tcaacggttg aactgactgg acggggggta atcgagtggg 180 agtcccccac attctgcatt tgcagttcct cacgatccac agcgatcgtc tgattgtacc 240 caggttactg ccgcgagcgt aagggagtgt tttggcagac acagtctaag acgctgacta 300 cggtcggtgt caaggatccg aaacgtaagc aagtttcttg ttactattga tcaacagcta 360 catcctacaa caacagcaaa catatcgtcc atcctcaacc caagaattcc acgtgaacat 420 accctgagta tacaattctt ggacaggatg tctgatacac caaactctga taaagtcgcg 480 tgtggaagga agcccatgtt ctgcgagatt ataaaactcg cgaacaggaa gcggttgatt 540 ttggatacaa ctggtgagcg agtgtacgac gcccgtataa attactgctc aacggcagat 600 gcgaccgttc aagccgattg ccatatatac tggcgcttga agctgcgacg cactgatgcc 660 gtttttgaag aatatactgg tcagggctac gcgctcgaca ctgcttcata cccccaacag 720 tatgctgata tcatcagggg gtattacagt aagcatgtgt caagtgcact agctgccaac 780 acccaacact ttgtgaacgt tttggctatg ttacgtcatg ctggcgcttg tattgcgcat 840 tattgcatga cagggaaaat tgattttgac atcttaagca aaaagaaaca taagaataaa 900 gaagttgtga cactaagcag tgctgacagt ttgagttttt tgcctcactc ggctctatat 960 ctgccttcag cgttacgtgc aagcgatcca gaaatattta atgttttgta cctgcttggt 1020 tgtgcttgtg atgcaagcat agcaatggac aacattgcga acacgagtgg ggcagctaaa 1080 tatgcgatgc ctcattataa cccactgcaa ctatctcacg ctctacatgt aaccatattc 1140 tatatgctgg gcttgatgga cagttgcggg tatggggaag atgcagtcct ggctttaacg 1200 gccggcctgc attctgtcac aacggtgata gcacacagtg atgaaggagc tataactcgt 1260 gatgctttaa gagagctctc atacacacag ccttatggca caatgccggt gccgattgca 1320 ggttactttc agcacataaa tgtgctgttt acaacacagc ctgcttggga tcaatttgca 1380 gggatttggg attatgtcat cttggcaact gctgcattgg ttcatctttc tgatcctgga 1440 atgacagtga atgacgtcac atatccgact acactcacta caaaagttgc atcagtagat 1500 ggccgtaaca gtgacatagc agcacagatg atgcacagtg ccacacggtt ctgtgatata 1560 tacattgaga acttatgtct cttttggggt gtggtcgcga acccagacgg gaatgcgagc 1620 caagctttac tgcacgcatt caatgtggtt gcttgtggca cagagccaaa caggcatctt 1680 gaaatgaatg tgatggcgcc atggtattgg gttgagagtt cagcactatt cagcgactac 1740 tcccaatttc gatcaccaat ctcctcagcg ggatatgggc cgcaaagcat ctacggtgca 1800 cgtttggtgc ttgctgccac caattctttg gaattcacgg gggaagcagg cgattactca 1860 gcataccgtt ttgagtggac gacaatgcgg cacaacccac tatttaacat tctcaataaa 1920 cgcgtcggtg atggccttgc taatgtggat ttcaggctgc gaccgtttaa tgagtggttg 1980 ctagaaggcc aaccgagccg tcgaagctgt gatgctgttg gccacggcac acctacggct 2040 acatgtaacc acaagactcc gaaccgtaac acagtggacg agtttatttg gggcagcact 2100 tcctgtgacc tctttcatcc agctgaacta acttcataca ccgccgtgtg tgttaggttc 2160 aggaattatt tgtctgaagc cgacggtgat gtacgcgtac taaacacacc cactagggag 2220 gttattgagg ggaatgttgt tacaaggtgt gacggcatac gctgcttgga cagcaacaag 2280 cgcatacaac atgttcctga ggtcgccaga cgttattgca tgatggcaag gtatttgcaa 2340 gcgcgtacct ttggagcgtt aactataggt gacgacataa tacgtggatt tgataaggtc 2400 gataaggttg tgaaaatgca taagagcaat aatagattag gtcaaatgcc cttaatagat 2460 gtaactggat tgtgtcagcc aatgattgaa acgagtactg ctcgtgcttc gatgactact 2520 cgcattgatc caaacagact tgctgcagcc acagctcgta tagaactacc actagcacct 2580 cgttgcacgt cctccctgat tccgtcatcc gatgcagtgc ccgaaccaga accacatgtt 2640 ggtgaaccgg gcaatggtag tggctgcgct tgatagtttt gaggacgcga gacgcattat 2700 tagtggggtt ctggatctat ctaggctgac taacacatct gttaaagggc aacatactaa 2760 cgatactaac tattttagta ggtacagtaa cttcttctcc caaatgccag cgattattct 2820 aaatcaactt aaatgctgca taaaggctca agttgatgac gccgtcaaaa tggttttaca 2880 gaaggcaaaa aaggtagaag ttagcaaacc ggtggagaaa atgctcacat tcactactct 2940 gaacacctat ctaggttatc cagaatctac ggggtgtgtt atggagtata ctgaggagca 3000 atcagggccg atcgcagcta agcttctcat aacattgctt tcttcaacac tgaatgcaat 3060 ggtccggcct aaaagtgacc caaatataag ccagaacaag ataccgcgtc actactacca 3120 gcttaaggtc catgtcggcg cccaaaagaa agtcaatctg acggcgatag aggtgatacg 3180 gggctgtcaa catgagtgta gtgtggtcta ttgtgaattt gtgcggtata gcgcgtattt 3240 cgcaggctta tatgacgatc aggtggccgc catcctatta tatgcggtgg cggcacataa 3300 cgtgcaagga tttggtgcgc ggttttgtgt gttgtgggct ttaatgtgtg ttcggatagc 3360 tggcttcgct gatgacatca acatatacat aaagcataga gggatgtctg gcttgctacc 3420 gcagttggtt gagatgaagt gtttgctggg gcgtggtgtc aatgagatcg atgttgagac 3480 tgaagcaaga agaaggctag atgtcggcag tctaagcatg cagaggctcg acgagaatga 3540 attgcgtgct gccgtccgac tgatctattc agaagaattg cgacggccgg tgacatatcc 3600 cctaatttgt gatttttggt cttctcgttg gctgtgggct gcaaatgggt cacattcacg 3660 agcattagaa catgcccatc ctgaacttgc aacaaggaaa gaaggacaag catacagaaa 3720 agccgtgatg gaacagtggc agcacaaccc aatggaccgt tgggatggga cagtgtatgt 3780 aactcctagc gcgaagcttg aacacgggaa gacgaggctg ttactcgcgt gtgatacgtt 3840 atcatacatg tggttcgaat atgcgctacg accggtggaa aggatttggg agaatagtaa 3900 tgttatcctg gatccaggaa gcatgggcaa ttgtgggata gctactagga ttaatggatg 3960 gcggaatggt atgcctgggc aaagcttttt tgcagtcgac tatgacgatt tcaactcaca 4020 acacaccctg atgtctcaaa aaatagtgtt tgaggagttg tttcatcaca tcgggtacaa 4080 tgcatcctgg gttaaaactt tagtagactc ttttgatagc atggaattgt ggataaaagg 4140 caagtgtgct ggcattatgg ctggaactct gatgagcggc catagggcta cgagctttat 4200 aaactctgtg ctcaacaggg catacattat atgtgcggga gggcatgtgc cgacatcgat 4260 gcacgtaggt gacgacatac tgatgtcttg cacgttaggc cacgctgata acttgatagc 4320 taatctcaac aggaagggag tcaggttaaa tgccagcaaa caagtcttca gcaagacgag 4380 tggtgagttt ttacgtgtgg cacaccgtga gcacacaagt catggttact tagcccgtgt 4440 tatcagcagt gctgtatctg gcaattgggt cagtgaccac actctcaatc agcaggaggc 4500 attgatgaat gccatagtgt gttgtcgtgg cattctcaac aggagcctac ctggtgagaa 4560 gaacccagta gttagggtaa tatcgaggag tgtgagtaag agaaccaaga tagaagaaaa 4620 aacaattaga ttattactaa gcggaagagc atgtcttaaa ggtggcgttg tatatggaga 4680 gcagacaaat tacattcaag tctataggat caactgccga gtagagagat ctgaagagaa 4740 actacctcca tataggcacg cgactgagga ctacctaaac aatcatttgg cagatattga 4800 agtaatggca gtaaggcaat atggatcgga catcgctgat atcatggccc aggcaagctg 4860 gaagaaatcc atgagtactg agggtgccga agatgtatcc cgcctatcac tgcaacgcga 4920 caaaactctg ccttgcttgc attgtattac agaaaaagaa acctctctat tgccagttcg 4980 ttacgggtta ttctctagtt atccaatcct catgatgctg aaggatagaa tacccataaa 5040 agaagctctc aagcttgcgg tgacgatcgg ctatcgacct caaccaaaca gtgatctgga 5100 gcttgatttg tggggtgaga gcaataattc gtgtgctatt gaaggagtgc ttccttacaa 5160 tgaagctacg tcattagcac aaaaacttcc ttgtggtggt gtcgttatac aggtaataca 5220 taacgtatac gtatagtgac taactacttg gaatatggca gaaagtgtca taaatcatca 5280 tcat 5284 //