ID M32662; SV 1; linear; genomic DNA; STD; VRL; 7510 BP. XX AC M32662; XX DT 23-JUN-1990 (Rel. 24, Created) DT 18-FEB-2018 (Rel. 135, Last updated, Version 7) XX DE Trichoplusia ni TED virus strain mutant FP-D ORF A, ORF B, and ORF C genes, DE complete cds. XX KW transposon. XX OS Trichoplusia ni TED virus OC Viruses; Ortervirales; Metaviridae; Errantivirus. XX RN [1] RP 1-7510 RX PUBMED; 1692964. RA Friesen P.D., Nissen M.S.; RT "Gene organization and transcription of TED, a lepidopteran retrotransposon RT integrated within the baculovirus genome"; RL Mol. Cell. Biol. 10(6):3067-3077(1990). XX DR MD5; b199b297a90056597b3ed5cb3b25cbd5. DR EuropePMC; PMC154989; 12743272. DR EuropePMC; PMC2996953; 20618961. DR EuropePMC; PMC311128; 11544196. DR EuropePMC; PMC4036539; 24777034. XX CC Draft entry and computer-readable sequence for [1] kindly submitted CC by P.D.Friesen, 07-MAR-1990. CC The transposon TED is a transposable element from the moth CC Trichoplusia ni which was found within the baculovirus AcMNPV CC genome. XX FH Key Location/Qualifiers FH FT source 1..7510 FT /organism="Trichoplusia ni TED virus" FT /host="Trichoplusia ni" FT /strain="mutant FP-D" FT /mol_type="genomic DNA" FT /db_xref="taxon:2083181" FT repeat_region 1..273 FT /rpt_type=LONG_TERMINAL_REPEAT FT misc_binding 274..290 FT /bound_moiety="tRNA primer" FT /note="tRNA primer binding site" FT CDS 663..1895 FT /codon_start=1 FT /product="ORF A" FT /db_xref="UniProtKB/TrEMBL:Q65352" FT /protein_id="AAA92248.1" FT /translation="MPHDPDVIFKALRLVPEFNGNPNILTRFINICDKLVEQYASAEPG FT SELGNLCLLNGILNKVTGTAASTINANGIPETWVGIRSSLINNFSDQRDETALYNDLSL FT ASQGNKTPQEFYEQCQTLFSTIMTYVTLHETLPTTIEAKRALYKKVTVQAFVRGLKEPL FT GSRIRCMRPETIEKALEYVQEELNVIYLQQRNESSRAHSSPKMLPIPQQSPVTPFNTLG FT IHRPPVPNWPVPMGQRGNQPPPQPFKFNVPNQYHNRMPTKTQQMLRAPPPNYHPQSNVF FT RLPPRNPPPNQIVKPMSGVQHFVPKTLPVMTGHDWRKSGNPPPNNYFKTRELNVNEFYS FT SDDSYNSVDYYSEPGCDYYTDYYNNPYDYDTNATCYDLPYDASETEAQPGPSHVHESQD FT FQSTKPSNEQG" FT CDS 2306..5560 FT /codon_start=1 FT /product="ORF B" FT /db_xref="GOA:Q65353" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR041373" FT /db_xref="InterPro:IPR041588" FT /db_xref="UniProtKB/TrEMBL:Q65353" FT /protein_id="AAA92249.1" FT /translation="MIPARSSKLVRIPINATDGEVLVEEQMFCNCIVHECVTMVKDGRG FT YVELENPTPNDVIFYLDQPASAELFNIKCTQVEQSQRVDDVLSRLRTDHLNEEEKANLL FT RLCSRYSDVFYIDGEALTFTNKIKHRIRTTDEVPVYTKSYRYPFIHRQEVRDQITKMLD FT QGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDK FT LGKCQYFTTLDLASGFYQVEMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMD FT NVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKIQMDKSEFLKLETA FT YLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFARLTKPLTQ FT CLKKGSKVTLSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAIGAVLSQGP FT IGSDKPVCYASRTLNESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWM FT MNLKDPNSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSRVEIHTTEIDEIDSVIENIK FT ELSSMINNPSETSRPQRQTENTDEIRQNSTTDTVHTSDEHPILEVPITNEPLNRFHRQI FT HLTVVGDIKRRPIVTKPFESHTRIAIQLSESNLEQDVISAIKEYVNPKVKTALIINPPL FT KMYSIIPIIQKTFRSSSLNLVLTKVELENVKEYLRQQDIIRHYHDGKTNHRGINECYLA FT LSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPATKPLETVHMDLFTVQ FT NEKYITFIDVFTKYGQAYHLRDGTAISILQALLRFCTHHGLPITIVTDNGTEFSNQLFS FT EFVRIHKIIHHKTLPHSPSDNGNIERFHSTILEHIRILKLQHKDEPIVNLMPYAIIGYN FT SSIHSFTKCRPFDLLNGHFDPRDPLDIDLTEHILQQYAQNHRQQMKQVYEIINETSLAN FT RTALIESRNKTRESEVEYIPQQQVFIKNPLASRQKVAPRYTQDTVLADLPIHIYTSKKR FT GPVAKARLKRVPKGNTLLQDSAATDNTCDASSRDKT" FT CDS 5985..7223 FT /codon_start=1 FT /product="ORF C" FT /db_xref="GOA:Q65354" FT /db_xref="InterPro:IPR022048" FT /db_xref="UniProtKB/TrEMBL:Q65354" FT /protein_id="AAA92250.1" FT /translation="MSQHNKVLEQLTLNQIRVNATLELLLQKEAYRDYSLIKFAKFAQI FT LGIITNNVEDLMLEIIRLENMMAFIRASSTHHSMIDIEALQSMIDRLKSLYTPNQILNL FT ELREYYSLIKPGSYFIDKRIVIVYNFPIVSQDTYDLYKLSIVPNKRQLALIPSSPYIAT FT DEKSFVYIEAECPKYSSTYLCEKKTGQQIQSKPDCIQKLIVHQSLENTCQFTKISLIKE FT AVEKLDDQHYVLSLPEPTKVQLACGRKDFNTLQGSYLVTIPMGCYLQTPELTIINDDNA FT IKGQPLKLAKIPYDEMNLTAVSTHINFSSIDLEDLHSIQTKFMLGKPIDIEEIQPTALY FT HTTIPLYVILLGAILFFTLRLIRKYKCWRLKSEDKEKQSSLEIHTYEDVKKNTRKRDDF FT PATFSLNMVKNSC" FT repeat_region 7238..7510 FT /rpt_type=LONG_TERMINAL_REPEAT FT regulatory 7446..7451 FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 7510 BP; 2553 A; 1642 C; 1304 G; 2011 T; 0 other; tgttaggtat ggagccttaa tggatatcat cgacgctgca tttcctgtta ttgtccgcca 60 gctgcataga aactgtctga atgacgtaaa tcgtcatgaa ccgctgatgt agcgaaattt 120 gtaattagtt attaactcaa aattgtatgc attcctattt ctaatatcga gtaggtctca 180 cgcattaatt attgtaattc ttataagtaa taaattagca tttaaaatca tttttggttt 240 tttttctatc tgccgtctgc agtatacgta attggcgcag tcggtaggat actcgcgggc 300 cggttcgcga gcaatagagt catctcatat cgatattcgc gttcgcgagt cgcccgggcg 360 gctttcaagc cacatcctga gtatcctgaa tctacgggac aactgcggag ccaggcggag 420 aatccagaca tcgattcgca gagaaagaac caatatgaaa cttatgtaag tacacttgaa 480 tcgttctcgt gttgcttcct ttctattcct agttacttta atctctaaaa atttttcgtc 540 acgaaaagtt ttacacccgg gaacctgcat cacgccaggc tcgccggaat atcattgata 600 ttaatagaga cttagataat tcagatttaa acttaggttt agatagatta tttagtataa 660 aaatgccaca cgatcctgac gtaattttca aggctttgcg acttgtgccg gaatttaatg 720 gcaaccccaa tattttaacg agatttataa atatatgtga taaactagta gagcaatatg 780 cgagcgctga gccgggaagt gagttaggaa atttatgttt gttaaatggc atcttgaaca 840 aggtcactgg aacagctgcc tctaccataa acgcaaatgg cattcctgaa acctgggtag 900 gcattagatc atctttaatt aacaactttt cagaccagcg cgatgaaacg gctttatata 960 atgacctctc attagcttca caaggtaata agactcctca ggagttctac gaacaatgcc 1020 aaaccttatt cagtaccata atgacgtatg taacgttgca tgagacttta ccaacgacta 1080 tcgaagctaa acgggcactt tacaagaaag taactgtgca ggcttttgtg cggggactaa 1140 aagaaccttt aggttcacgt ataaggtgta tgcgccccga gactatcgag aaagcccttg 1200 aatatgtgca ggaagagcta aatgtaatat atctgcagca acgcaatgag tcttcgaggg 1260 ctcacagctc tcctaaaatg cttcctatac cgcaacagtc tcctgtgacc ccattcaata 1320 cattaggtat tcacagaccg ccggtaccta actggccggt tccgatggga caacgtggca 1380 atcaaccacc acctcaaccc tttaaattta atgtgcctaa ccaatatcat aatcgcatgc 1440 ctactaaaac tcaacagatg cttagagcac cgccaccaaa ttatcatcct cagagtaacg 1500 ttttccgctt accaccacgt aatccaccac caaatcaaat tgtaaaaccg atgagtggag 1560 ttcaacattt tgtcccaaaa actttacctg taatgacggg acatgactgg cgtaaatccg 1620 ggaatccgcc gccaaataat tacttcaaaa ctcgcgaatt aaacgttaac gaattctact 1680 cgtctgacga ctcatataac tcagtcgact attattccga accagggtgc gactattata 1740 ctgactatta taacaacccc tatgactatg acacaaacgc gacctgttac gacttacctt 1800 acgacgctag tgagacagaa gctcaaccag gccctagcca tgtacatgaa agtcaggatt 1860 ttcaatcgac caaaccatca aacgaacaag gatagatatt aacctacagt accaaagaca 1920 actaccatat atagaatttt ctgatccacc attaaaattc ttgattgaca ctggtgccaa 1980 tcaatcattt attagccccc aagccgtcca aaaatacttt tccaattact cggtgaatta 2040 cgacccattt gaaataacga acatacacgg tgtcagtaga aatgagcact caattacatt 2100 accatgtttc caggagttta acgaaaccca agatattaaa ttatttatat accattttca 2160 tgattatttc gatggattaa taggactaga tttattgtct aaatgggagg ccaagataga 2220 tttaaaagac tttttactaa taactaaatt tgcaactaac cgcattaagc tatataactc 2280 tcgtaatgtc aacctgtacg aggatatgat acctgcaaga agttctaagt tagtaaggat 2340 acctattaac gctacggatg gcgaagtttt agtagaagaa caaatgtttt gcaactgcat 2400 tgtccatgaa tgcgttacca tggtaaaaga tggccgtgga tatgtagaat tagagaatcc 2460 aacccctaat gatgtaattt tttacctgga tcagccagct tctgccgaat tattcaatat 2520 caagtgcaca caagttgaac agtcacaacg tgtagacgat gttttatcac gattgcgtac 2580 agaccatctc aatgaggagg aaaaagctaa ccttttaaga ctttgctctc gatattcaga 2640 tgtattttac attgacgggg aagcccttac attcactaat aaaattaaac accgtataag 2700 aacaacggac gaagtacccg tgtacaccaa aagttaccgg taccccttca tccatcgcca 2760 ggaagttagg gaccaaatca cgaaaatgtt ggaccaagga attataagac catcagactc 2820 tgcatggagc tcacccatat gggttgtgcc caagaaaatc gacgcttctg ggaaacaaaa 2880 gtggcgtctc gtagttgact tccgtaagtt gaacgagaag actatcgatg acaaataccc 2940 gataccaaac ataagtgacg tacttgacaa gttaggtaag tgccaatact tcaccacctt 3000 agatttggca agtgggtttt atcaggtgga gatggaccct caagatatat cgaaaaccgc 3060 gtttaacgta gaacacgggc attttgaatt ccttcgaatg cctatgggat taaaaaactc 3120 accatctact tttcaaagag ttatggacaa tgtcctaaga ggtctccaaa ataacatctg 3180 tctcgtctac cttgacgata ttattgtcta tagtacttcc ctacaggaac acctggagaa 3240 cctggaacga gttttccaaa gacttagaga aagtaacttc aaaattcaaa tggacaagtc 3300 cgaattcttg aagctcgaaa ctgcttatct tggtcacatc ataagcaggg acggtatcaa 3360 gcctaaccct gataagattt ccgctattca aaaatatctg attccaaaga cccctaagga 3420 aataaaacaa tttttaggcc ttctcggtta ttaccgaaaa ttcattccag attttgcacg 3480 actcacaaaa ccccttacac agtgcttaaa aaaaggtagt aaagtaactc ttagtcccga 3540 atatgtaaat gcttttgaac actgtaaaac tctgttaacc aacgacccaa tattacaata 3600 cccagacttt accagagaat ttaacctcac gacagacgct tctaacttcg ctattggagc 3660 ggtactatcc caaggaccaa taggatccga caaacccgtc tgttacgctt ctcgaacact 3720 caatgagagc gaactaaact atagcacaat agagaaagaa ttactggcta tagtttgggc 3780 tacaaaatat tttagaccct acttattcgg tagaaaattt aagatattga ctgaccacaa 3840 accactacag tggatgatga acttaaaaga cccaaactca cgaatgacta gatggcgact 3900 acgactaagt gaatatgact tctctgtagt gtacaagaaa ggaaagtcta ataccaacgc 3960 tgatgccctt tctcgtgttg agatccatac cacggaaata gacgaaattg actcagtaat 4020 agaaaacatt aaagaactta gctcaatgat taataacccc tccgagacat ctcgacctca 4080 aagacaaacc gaaaacacag acgaaatcag acagaactcg acaaccgaca ctgtacatac 4140 tagtgatgaa caccctattc tggaagtgcc cattacaaac gaaccactca acagatttca 4200 tagacagatt catcttaccg tagtaggaga cataaaacga cgacctattg tgacaaaacc 4260 tttcgaaagt catacccgaa tagcaatcca actatcagag tcaaacttag aacaagatgt 4320 tataagtgcc atcaaagaat acgttaaccc aaaagtcaaa acagccctga tcataaatcc 4380 gcccttaaag atgtattcta ttatccctat tatacaaaag acgttcagaa gttcatccct 4440 taacttagtg ttaaccaaag tcgaacttga aaatgtcaaa gagtatctta gacaacaaga 4500 cattatacga cattaccatg acggaaagac aaaccaccgg ggaataaatg aatgctacct 4560 agcactctca aaaaggtatt actggcccag gatgaaagat caaatcacta aatttatcaa 4620 tgagtgtact atctgtggtc aagccaaata tgacaggaac ccaatacgac ctcagtttaa 4680 tattgtaccc ccagctacga aacctctaga gaccgttcat atggacctat ttacagttca 4740 aaatgagaaa tatataacgt tcattgacgt atttacgaag tacggtcagg cataccacct 4800 acgtgatggc accgctatta gtattttaca ggcattgtta cgattttgca ctcatcacgg 4860 attacccata accatagtta ctgataacgg caccgaattt tccaatcaat tattctctga 4920 attcgtacgt attcataaga taattcatca taagacctta ccccacagcc cgagcgataa 4980 cggaaatatt gaacgtttcc attccacaat tcttgagcat attcgaattc taaaactaca 5040 acataaggat gaaccaattg ttaaccttat gccatacgct atcataggct acaatagttc 5100 catacatagt ttcaccaaat gcagaccttt cgatctacta aatggacact ttgatccaag 5160 ggacccgctt gacatagacc taaccgaaca cattctgcag caatatgctc agaatcatcg 5220 tcaacagatg aaacaagtct acgaaattat caatgaaaca tctcttgcta atcgtacggc 5280 tttaatagaa agtagaaaca aaacgcgcga atctgaagta gaatacatcc ctcagcagca 5340 agtattcatt aaaaaccctc tcgccagccg tcagaaggta gcaccacgct atacccagga 5400 tacggtctta gcagatctgc ccatacacat ctatacgtct aaaaaacgtg ggcccgtagc 5460 taaagcgcga ctaaaacgtg ttcctaaagg taacacattg ttacaggact ctgctgctac 5520 tgacaataca tgcgacgcat cctcaagaga taagacttga gaccctagct gatggacccg 5580 gactattacc atacaaactg ggaccgacac gactaaccat acactatcat tcctttatac 5640 aacccattga cctcaacgat attgaaaata aaatcgactc tgtacagact caacttaata 5700 catttaggac taaactcgat aacgaaactt acctactcta tgaatatcaa attgattatc 5760 ttactaataa ggttggcaaa ttactacacc aaattaaatc tttagaacct gttagagtta 5820 aaagaggtct tatagatggc ctagggtcta tagtaaaaag tgtcactggc aacttagact 5880 accaagatgc ccttaaatac gacgaggctc ttaaaacctt acagaccaac gaaggcaaat 5940 taacatcaga atttaatagc catctgagtc tttgcaaaga gtggatgtcc caacacaata 6000 aagtgttaga acaactaact ttaaatcaaa taagagttaa tgccacttta gaactactat 6060 tacaaaaaga agcttatagg gactatagct taattaaatt tgcgaaattc gcacaaatct 6120 taggaattat aacaaacaac gtagaagatt taatgttaga aataatcaga ttagaaaata 6180 tgatggcttt tatacgcgca tctagtactc atcattccat gattgatata gaggccttgc 6240 agtcaatgat agatagatta aaatcccttt atactccaaa tcaaattcta aatttagaac 6300 ttagggaata ttacagctta atcaagccag gatcttattt catcgataaa cgtatagtaa 6360 tagtatataa ttttccaatt gtttcccaag atacatatga cctatacaaa ctatccattg 6420 tacccaacaa aagacaactt gcccttattc cttcctctcc ttatatagca acagatgaga 6480 aatcgttcgt gtacatagag gctgaatgcc cgaagtatag cagtacttat ctctgcgaaa 6540 agaagaccgg ccagcagatc cagtcgaaac ctgattgtat tcagaaactc atcgttcatc 6600 agagtctaga gaatacttgt caattcacga agatatctct catcaaggaa gcagtagaaa 6660 aattagacga ccaacattac gtgctgtctc tacccgaacc taccaaagtt cagttggcat 6720 gtgggagaaa ggacttcaac acacttcaag gaagctacct cgtaaccatc cctatgggtt 6780 gctatctaca gactccagaa ttaactataa taaacgatga caacgcgata aagggtcaac 6840 cattgaaact agcgaagata ccatacgatg aaatgaatct gactgccgtc tctacccaca 6900 tcaatttcag ctcgatcgat ctggaagact tacacagcat ccaaactaaa ttcatgttgg 6960 gaaaacctat tgacatcgag gagattcaac caactgccct gtaccacaca accatcccac 7020 tatacgtcat attactgggc gcaatcctat ttttcactct gagattaatt cgcaaataca 7080 aatgttggag actaaaatca gaagataaag aaaagcagtc atctcttgag atacatacat 7140 acgaagacgt caagaaaaat accagaaaac gagatgactt tccagcaaca ttttctctta 7200 atatggtcaa aaatagttgc tgatctatgg gtggaggtgt taggtatgga gccttaatgg 7260 atatcatcga cgctgcattt cctgttattg tccgccagct gcatagaaac tgtctgaatg 7320 acgtaaatcg tcatgaaccg ctgatgtagc gaaatttgta attagttatt aactcaaaat 7380 tgtatgcatt cctatttcta atatcgagta ggtctcacgc attaattatt gtaattctta 7440 taagtaataa attagcattt aaaatcattt ttggtttttt ttctatctgc cgtctgcagt 7500 atacgtaatt 7510 //