ID L16015; SV 1; linear; genomic RNA; STD; VRL; 4041 BP. XX AC L16015; XX DT 04-JAN-1994 (Rel. 38, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Cardamine chlorotic fleck carmovirus genome, replicase, coat protein, p8 DE protein, and p9 protein genes, complete cds. XX KW coat protein; complete genome; p8 protein; p9 protein; replicase; KW viral genome. XX OS Cardamine chlorotic fleck virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Betacarmovirus. XX RN [1] RP 1-4041 RX PUBMED; 8376969. RA Skotnicki M.L., Mackenzie A.M., Torronen M., Gibbs A.J.; RT "The genomic sequence of cardamine chlorotic fleck carmovirus"; RL J. Gen. Virol. 74(Pt 9):1933-1937(1993). XX RN [2] RP 1-4041 RA Skotnicki M.L.; RT ; RL Submitted (11-MAY-1993) to the INSDC. RL M.L. Skotnicki, Molecular Evolution and Systematics, Research School of RL Biological Sciences, Australian National University, Canaberra, A.C.T. RL 2601, Australia XX DR MD5; a6147da3efa6f28d9672ce97c874c8a1. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC1421387; 16524473. XX CC On Oct 22, 1993 this sequence version replaced gi:409253. XX FH Key Location/Qualifiers FH FT source 1..4041 FT /organism="Cardamine chlorotic fleck virus" FT /isolate="CCFV-CL" FT /mol_type="genomic RNA" FT /db_xref="taxon:31711" FT CDS 38..2359 FT /codon_start=1 FT /transl_except=(pos:779..781,aa:OTHER) FT /product="replicase" FT /note="readthrough of stop codon at position 779-781" FT /db_xref="GOA:Q65987" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q65987" FT /protein_id="AAB02616.1" FT /translation="MDALLPEFLAHKLSRLVLKCFGIGSDEEAPQQIFVGEFPVWGGEI FT VPPQPEELNQLVIPRKWVRSIGSSLNRVVLPPSSGVVASLEENCVAPFEEASVEQLEPA FT SGDTGDLPRRKIRRRGRFVAHAVCAAKLHFSGCPTQTLANRLAVSKWLVQYCTERNVIP FT SHTRIAVQEALPQVFLPDGHDLKEVLDLHTEEAHDRRNALRKRGRHVRRWWVQLAMHPM FT TGRSWLRAWRRLTGLPDDVAVQFVRXGCLRELVGRETAISRGEHPAMRVFPLAQPPKIR FT RIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKELKPAPQPLPDAFAKLSGI FT RRKLVKLAGNHTPILREDYSKLYKGRRATIYQNACESLADRACTQGGSAELKTFVKAEK FT INFTAKKDPAPRVIQPRDPRYNIEVGKYLKCYEHHLYRAIDKMWCGPTVLKGYNVEEIG FT NIMSDAWNQFQKPCAIGFDMKRFDQHVSVDALKWEHSVYNASFNCPDLAKMLTWQLKNK FT GVGRASDGYIKYQVEGCRMSGDVNTAMGNCLLACSITRYLMKGIKSRLINNGDDCVVFF FT ESGDMHEVRERLCRWIDFGFQCIAEEPQYDLEKVEFCQMSPIYDGEGWVMVRNPRVSLS FT KDSYSTTQWGSVRDAASWLASIGECGMAIAGGIPIVQSYYNCLLRNFKHLARNTSKKKL FT DVSFNSGFSMLAQNGNRGSKEVSEAARYSFYVAFGYTPDEQRGLEGYYDNLALEAAWDP FT EGYDETLLNRWIINPSLTTP" FT CDS 2326..2541 FT /codon_start=1 FT /product="p8 protein" FT /db_xref="GOA:Q65988" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q65988" FT /protein_id="AAB02617.1" FT /translation="MDNQSESDNSVKRRSGKKVNKQVRGSEKSATKRSVASHAARSFSQ FT RPSGDSAGGNWVLVADKIEVSISFNF" FT CDS 2438..2722 FT /codon_start=1 FT /product="p9 protein" FT /db_xref="GOA:Q65989" FT /db_xref="UniProtKB/TrEMBL:Q65989" FT /protein_id="AAB02618.1" FT /translation="MQLARSVNAHLAILLGVIGFWLLIRLKFQYPSISDQLPVPSPWVK FT YLILSSFNSLSLVLLLCHLIPDIKPAVTYYNTTDNTKSQHISISTANGN" FT CDS 2712..3767 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q65990" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q65990" FT /protein_id="AAB02619.1" FT /translation="MAIKEDPRLVKMASLGVPWAVKVTTKGWGSLTTKQKIAARAALQI FT PMRVTKQPTPKVVRVSAPAAVSYREVTGAPRVTTAGKVLTHTASELITTLKKNTSLEPK FT YVEAIVNPSRVGTFNQLPDIAASYEKYKFTSLRFRYSSTCPTSTGGKVALAFERDAANP FT LPDNLTAFYNLEGNTSSNPRDSFVLTVPCDNVARFVADGGSDPKLVDFGKLLAASYGQG FT EGDANGLGEIHIEYTVQLYNRLGSAQRSQIGSLDGKFLGPRLVEVTSGKSDKGTKFTFS FT FHGCGLIPILWLAKPRWPLTAGSAVACEVLGQSGDDSVQWAGIRISEREQTVEFEHTET FT TPEAKWSVSRL" XX SQ Sequence 4041 BP; 1073 A; 976 C; 1082 G; 910 T; 0 other; ggttttccac gaaatccaat tcttcttctc aaccctcatg gacgctcttt taccggagtt 60 tctcgcccac aagctttcgc gtttagtgct caaatgcttt ggtataggta gtgatgagga 120 agcaccccag caaatctttg taggggaatt ccccgtatgg ggtggggaaa tagtcccccc 180 ccaaccggag gagctgaatc aactagtcat tccccgtaag tgggttaggt caataggaag 240 tagtcttaat agagtagtct taccaccctc tagtggggtt gtcgcctccc ttgaggagaa 300 ctgtgtggca cctttcgagg aagctagcgt agaacagtta gaaccagcta gtggtgatac 360 tggtgacctc cctaggagga agataaggag acgagggcga ttcgtcgcgc atgcggtgtg 420 tgctgcaaag ctgcacttca gcggttgccc tacgcaaacg ctagccaacc ggttggcggt 480 gtcgaaatgg ctggtgcagt actgcactga aagaaatgtt atacccagcc atacgagaat 540 agctgtgcaa gaggctcttc cacaggtttt cctgcccgat gggcacgacc tgaaggaagt 600 tctggacctt catactgaag aggcccacga caggcgaaac gcgctccgca agcgaggcag 660 gcacgtacgt cgatggtggg ttcaattagc aatgcacccc atgactggca gatcatggct 720 acgggcgtgg aggaggctta ccggccttcc cgacgacgtg gctgtgcaat ttgtccgcta 780 ggggtgctta cgggaattgg ttgggcgaga gactgctatc tctcgggggg aacacccagc 840 catgcgcgta ttcccgttag cacagccccc caaaatacga cgcatcttcc atatctgtgg 900 aatgggcaat ggtttagact ttggagtcca caacaactca ctcaacaatc tgagaagagg 960 tttgatggaa cgagtctttt acgtcgaaga tgcgcagaaa gaactgaaac cagcccccca 1020 acctctaccc gacgcgttcg ctaagcttag cggaattcgg cgcaaattgg tgaagcttgc 1080 tggaaatcat acccctatcc ttagagaaga ctactctaag ttgtataagg gcaggagagc 1140 aaccatctac caaaatgcgt gcgaatcatt agctgatcga gcgtgtacac aaggcgggag 1200 cgctgagctt aaaaccttcg tcaaagctga gaagattaat tttacggcga agaaggatcc 1260 ggcacctagg gttatccaac ctagggatcc tagatataac atagaggtag ggaaatatct 1320 gaaatgctac gaacaccatc tttacagagc aattgataag atgtggtgtg gtccgacagt 1380 gttgaaaggt tacaatgttg aggagatagg gaacataatg tcagacgctt ggaaccaatt 1440 ccagaaaccg tgtgctatag gctttgatat gaagagattc gatcagcacg tttctgtaga 1500 tgccctcaaa tgggagcata gcgtctacaa tgccagcttt aactgtcccg atttggccaa 1560 gatgctaacg tggcagctga agaacaaggg cgttggtagg gcttccgatg gatacatcaa 1620 gtaccaggta gaaggatgta gaatgtcagg tgatgtgaat acagctatgg ggaactgtct 1680 cttggcttgt tccatcactc gttatctaat gaaggggatt aagagcagac tgatcaataa 1740 tggagacgac tgtgttgtgt tctttgagag tggcgatatg catgaggtac gtgaaagact 1800 gtgccgttgg atcgatttcg gattccagtg catcgccgaa gaaccgcagt acgaccttga 1860 gaaggtagag ttttgccaaa tgtcacctat ttatgatggc gagggatggg tcatggttag 1920 gaacccccgt gtaagcttat ccaaagacag ctacagcacg acacaatggg gcagcgtcag 1980 agacgcagcc agctggttgg catctatcgg agagtgcggc atggccattg caggtggcat 2040 accaatcgtg cagtcatatt acaattgtct gctaagaaat ttcaagcatt tggcgcgaaa 2100 tactagcaag aagaaattgg atgtttcctt taactcggga ttcagtatgt tggcccaaaa 2160 cggcaatcgg gggtccaaag aggtttctga agcagctcgg tactcatttt acgtggcttt 2220 cgggtacacc cctgatgaac aaaggggact cgaaggctac tatgataatc tggcgttaga 2280 agcagcatgg gaccccgagg gttatgatga aaccctactg aatagatgga taatcaatcc 2340 gagtctgaca actccgtaaa gcgaagatct gggaagaagg tcaataaaca ggtgcgagga 2400 agtgagaaga gtgcgacgaa gaggtcggtg gcgagccatg cagctcgctc gttcagtcaa 2460 cgcccatctg gcgattctgc tgggggtaat tgggttctgg ttgctgataa gattgaagtt 2520 tcaatatcct tcaatttctg atcagttgcc ggtgccgtcc ccctgggtta aatacctaat 2580 cctaagcagt ttcaactctc tctctctcgt cttactcctc tgtcatctga tacctgacat 2640 caaaccagca gtaacatact acaacaccac tgacaacaca aaaagccaac acatctcgat 2700 cagcaccgca aatggcaatt aaggaggacc caagattggt aaaaatggca tcgctaggcg 2760 tcccttgggc agtgaaggtt acaacgaagg ggtggggctc tctcaccact aagcagaaga 2820 ttgcagcacg agctgcgttg cagataccca tgcgcgtgac gaagcagcct accccgaagg 2880 tggttcgtgt gagtgctccc gccgcggttt cataccgtga ggtcacggga gctccacgag 2940 tcactacggc tggtaaggtg ctgacacaca ctgcaagtga actcatcacc acgctgaaga 3000 aaaacacctc actggagccg aagtatgtcg aagcgatcgt caacccaagc cgggttggca 3060 catttaacca actccccgat attgcggcgt cgtacgaaaa atacaaattc acctcactca 3120 ggttccgcta ctcgtccacg tgccctacct caaccggagg aaaggtcgcg ctagcgtttg 3180 agcgtgacgc tgccaacccg ctacctgaca acctgactgc gttctacaat ctagaaggca 3240 acacctccag caacccaagg gattccttcg ttctgaccgt gccttgcgac aatgtcgcga 3300 ggttcgtggc agacgggggc agcgacccga agctagtcga tttcggcaag cttctggctg 3360 catcctacgg gcaaggggaa ggtgacgcca atggactggg agaaatccac atagagtaca 3420 cagtccaact atacaaccgc ctaggttccg cccagagaag ccaaatcggc tctctcgacg 3480 gcaagttctt gggaccgagg ctggttgaag ttacgtcagg aaagtcagac aaaggcacca 3540 aatttacctt cagcttccac gggtgtggtc ttatacctat cctgtggtta gcgaagcccc 3600 gttggcccct cacagcagga tccgcagtcg cttgcgaggt cctcggccaa tcgggagatg 3660 atagtgtgca atgggctggt ataagaatca gcgaacgtga gcagacagtt gaatttgaac 3720 acactgagac aacaccagaa gccaaatggt ctgtgtctcg cctgtaaagt aagtagccta 3780 acctgctgca gcaggaagta ttctaggtag tatagtaact ctttcttcaa cttcttactt 3840 agaaaaacac aaaaataccc ccagctcgct tttgttttga gctgtgttag ggaccaaaaa 3900 cggcgactca tccgtcctga gtggcctctg gtgtggaaac cagagagtct tgcggtaacc 3960 aacgaaatct cttcggagtg ggtgttgggg accaccaaat gaagaaaata gcccctccct 4020 cgcgcagggg ggggccagcc c 4041 //