ID   KC767662; SV 1; linear; genomic RNA; STD; VRL; 1986 BP.
XX
AC   KC767662;
XX
DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Alfalfa mosaic virus isolate 178 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-1986
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   "RNA 3 sequence of Alfalfa mosaic virus isolated from Actinidia species";
RL   Unpublished.
XX
RN   [2]
RP   1-1986
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   ;
RL   Submitted (12-MAR-2013) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3a Symonds
RL   Street, Auckland 1010, New Zealand
XX
DR   MD5; aa5dbac6953ca8481239c9c62c4b49b0.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Geneious Pro v. 5.3.5
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1986
FT                   /organism="Alfalfa mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Actinidia fortunatii"
FT                   /isolate="178"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="01-Aug-2010"
FT                   /db_xref="taxon:12321"
FT   5'UTR           <1..190
FT   CDS             191..1093
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:R9XMF0"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:R9XMF0"
FT                   /protein_id="AGO15289.1"
FT                   /translation="MENTKTNASSSGISSSSSFSVSYAEEMLPADEVSKVNSMSILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKRSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS
FT                   SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKKDPNPVLLEPRAKIAGKAKTFFIPEGLGVPSTTINGITPTVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   CDS             1142..1807
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:R9XMW5"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:R9XMW5"
FT                   /protein_id="AGO15290.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVTKPTN
FT                   TILPQTGCVWQSLGTPLSLSSSNGLGARFLYSFLKDFAAPRLLEEDLVFRMVFSITPSH
FT                   AGTFCLTDDVTTEDGRAVAHGNPMQEFPQGGFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDALPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLFDEADDLDRH"
FT   3'UTR           1808..>1986
XX
SQ   Sequence 1986 BP; 533 A; 434 C; 453 G; 566 T; 0 other;
     acagtgtaat tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttatttt        60
     ggcctaacac gtaattcgta ctcttcgtga gtaagttgtg ttagccatat ctatccttta       120
     attttctgtc aaattaaaaa gaaaatcatt cccatttgcg taattcgtac tcttcgtgag       180
     taagttgcga atggagaata caaaaacaaa tgcctcgagt tcaggaatat cttcttcctc       240
     cagcttttca gtgtcttatg ctgaggaaat gttaccagct gatgaagttt caaaagtgaa       300
     ctcaatgtcg atcctgggtc ccaatcagct aaagctctgc actcaattgg tactgtctaa       360
     tggagcagca ccagtagtat taagccttgt gtcgaaggaa aagagatcga ttttaaatcg       420
     tatgcttcca aagatcggac agaggatgta cgtccatcac tcggctattt acctccttta       480
     tatgccaaac atactaaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaagc       540
     tacgggagag ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatatttgc       600
     tggacgttac ccccggagta ttctggcgaa agatgccgcg aaaggacacg acttgaaatt       660
     agtcgtccac gcggttgctt cgaccaatgc aaactctgct gtcggtgttc tatacccaat       720
     ttgggaagat gagttaagca gaaagcaaat cctcgaaagg ggtgccgatt ttctaaagtt       780
     tccaattgct gagaccgaac cagtccgcga tctcttaaat gctggaaaat tgacggactt       840
     cgttcttgat aggacgaggt taggtgtggg atcaaagaag gatcccaatc cggttctttt       900
     agaaccaaga gctaagattg ccgggaaggc aaagacattt tttattcccg aaggtcttgg       960
     tgttcctagt accactataa atggtataac accgacggtg cgaatagatg ccggttctcc      1020
     aaagggtctt ggagttccga aagggtttac gtatgaaagt tttattaaag atgaaatatt      1080
     acctgatcat tgatcggtaa tgggccgttt tatttttaat tttctttcaa attcttccat      1140
     catgagttct tcacaaaaga aagccggtgg gaaagctggt aaacctacta aacgttcaca      1200
     gaactatgct gctctacgca aagctcaact gccgaagcct ccggcgttga aagtcccggt      1260
     tacaaaaccg acgaatacta tactgccaca gacgggctgc gtgtggcaaa gcctcgggac      1320
     ccctctgagt ctgagctctt caaatgggct cggtgcgaga ttcctctaca gttttctgaa      1380
     ggatttcgca gcaccccggc tcctcgaaga ggatctggtt ttcaggatgg tgttttctat      1440
     aacaccgtcc catgccggca ctttttgtct cactgatgac gtgacgactg aggatggtag      1500
     ggccgttgcg catggtaacc ccatgcaaga atttcctcaa ggcggttttc acgccaatga      1560
     gaagttcggg tttgagttgg tcttcacagc tcctacccat gcagggatgc aaaatcaaaa      1620
     tttcaagcat tcctatgccg tagccctctg tttggacttc gacgctctgc ctgagggatc      1680
     taaaaatccc tcataccgat tcaacgaagt ttgggtcgag agaaaggcgt ttccgcgagc      1740
     agggcccctc cgcagtttaa ttactgtggg tctgttcgac gaagctgacg atcttgatcg      1800
     tcattgatgt accccattaa tttgggatgc taaagtcatt taatgctgac ctccactggg      1860
     tggattaggg tcaaggtatg aagtcctatt cgctcctgat aggaacgact tcatattgct      1920
     tatatatgtg ctaacgcaca tatataaatg ctcatgcaaa actgcatgaa tgcccctaag      1980
     ggatgc                                                                 1986
//