ID   KC767661; SV 1; linear; genomic RNA; STD; VRL; 1976 BP.
XX
AC   KC767661;
XX
DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Alfalfa mosaic virus isolate 176 movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-1976
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   "RNA 3 sequence of Alfalfa mosaic virus isolated from Actinidia species";
RL   Unpublished.
XX
RN   [2]
RP   1-1976
RA   Cowell S.J., Pearson M.N., Cohen D.;
RT   ;
RL   Submitted (12-MAR-2013) to the INSDC.
RL   School of Biological Sciences, The University of Auckland, 3a Symonds
RL   Street, Auckland 1010, New Zealand
XX
DR   MD5; 1723ec28abbc2c892ffebe0164bd042b.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Geneious Pro v. 5.3.5
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1976
FT                   /organism="Alfalfa mosaic virus"
FT                   /segment="RNA3"
FT                   /host="Actinidia glaucophylla"
FT                   /isolate="176"
FT                   /mol_type="genomic RNA"
FT                   /country="New Zealand"
FT                   /collection_date="01-Aug-2010"
FT                   /db_xref="taxon:12321"
FT   5'UTR           <1..190
FT   CDS             191..1093
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:R9XL51"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:R9XL51"
FT                   /protein_id="AGO15287.1"
FT                   /translation="MENTKKNASSYGISSSSSFSVSYAEEMLLADEVSKVNSMPILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKRSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS
FT                   SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKKDPNPVLLEPRARIAGKAKTFFIPEGLGVPSTTINGITPTVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   CDS             1142..1807
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:R9XQ34"
FT                   /db_xref="UniProtKB/TrEMBL:R9XQ34"
FT                   /protein_id="AGO15288.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPTLKVPVAKPTN
FT                   TILPQTGCVWQSLGTPLSLSSSNGLGARFLYSFLKDFVAPRLLEEDLVFRMVFSITPSH
FT                   AGTFCLTDDVTTEDGRAVAHGNPMQDFPQGVFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDALPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLFDEADDLDRH"
FT   3'UTR           1808..>1976
XX
SQ   Sequence 1976 BP; 527 A; 431 C; 450 G; 568 T; 0 other;
     acagtgtaat tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttatttt        60
     ggcctaacac gtaattcgta ctcttcgtga gtaagttgtg ttagccatat ctatccttta       120
     tttttctgtc aaattaaaag gaaaatcatt cccatccgcg taattcgtac tcttcgtgag       180
     taagttgcga atggagaata caaaaaaaaa tgcctcgagt tatggaatat cttcttcctc       240
     cagcttttca gtgtcttatg ctgaggaaat gttactagct gatgaagttt caaaagtgaa       300
     ctcaatgccg atcctgggtc ctaatcagct aaagctctgc actcaattgg tactgtctaa       360
     tggagcagca ccagtagttt taagccttgt gtcgaaggaa aagagatcga ttttaaatcg       420
     tatgcttcca aagattggac agaggatgta cgtccatcac tcggctattt acctccttta       480
     tatgccaaac atactaaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaagc       540
     tacgggagag ttagtggatg ttgacaccga ccatgatgct acccaagcat gtatatttgc       600
     tggacgttac ccccggagta ttctggcgaa agatgccgcg aaagggcacg acttaaaatt       660
     agtcgtccac gcagttgctt cgaccaatgc aaactctgct gtcggtgttc tatacccaat       720
     ttgggaagat gagttaagca gaaagcaaat cctcgaaagg ggtgccgatt ttctaaagtt       780
     tccaattgct gagaccgaac cagtccgcga tctcttaaat gctggaaaat tgacggactt       840
     cgttcttgat aggacgaggt taggtgtggg atcaaagaag gatcccaatc cggttctttt       900
     agaaccaaga gctaggattg ccgggaaggc aaagacattt tttattcccg aaggtcttgg       960
     tgttcctagt accactataa atggtataac accgacggtg cgaatagatg ccggttctcc      1020
     aaagggtctt ggagttccga aagggtttac gtatgaaagt tttattaaag atgaaatatt      1080
     acctgatcat tgatcggtaa tgggccgtat tatttttaat tttctttcaa attcttccat      1140
     catgagttct tcacaaaaga aagctggtgg gaaagctggt aaacctacta aacgttcaca      1200
     gaactatgct gctctacgca aagctcaact gccgaagcct ccgacgttga aagtcccggt      1260
     tgcaaaaccg acgaatacta tactgccaca gacgggctgc gtgtggcaaa gcctcgggac      1320
     ccctctgagt ctgagctctt caaatgggct cggtgcgaga ttcctctaca gttttctgaa      1380
     ggatttcgta gcaccccggc tcctcgaaga ggatctggtt ttcaggatgg tgttttctat      1440
     aacaccgtcc catgccggca ccttttgtct cactgatgac gtgacgactg aggatggtag      1500
     ggccgttgcg catggtaacc ccatgcaaga ttttcctcaa ggcgtttttc acgccaatga      1560
     gaagttcggg tttgagttgg tcttcacagc tcctacccat gcagggatgc aaaatcagaa      1620
     tttcaagcac tcctatgccg tagccctctg tttggacttc gacgctctgc ctgagggatc      1680
     taaaaatccc tcataccgat tcaacgaagt ttgggtcgag agaaaggcgt ttccgcgagc      1740
     agggcccctc cgcagtttaa ttactgtggg tctgttcgac gaagctgacg atcttgatcg      1800
     tcattgatgt accccattga tttgggatgc taaagtcatt taatgctgac ctccactggg      1860
     tggattaagg tcaaggtatg aagtcctatt cgctcctgat aggaacgact tcatattgct      1920
     tatatatgtg ctaacgcaca tatataaatg ctcatgcaaa actgcatgaa tgcccc          1976
//