ID KC706594; SV 1; circular; genomic DNA; STD; VRL; 2498 BP. XX AC KC706594; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Tomato common mosaic virus isolate BR:Coi17:07 segment DNA-B, complete DE sequence. XX KW . XX OS Tomato common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2498 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2498 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (01-MAR-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; ae8fded59fcc72b31a7752be7e5590ed. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2498 FT /organism="Tomato common mosaic virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /isolate="BR:Coi17:07" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2007" FT /db_xref="taxon:536084" FT CDS 411..1181 FT /codon_start=1 FT /product="nuclear shuttle protein" FT /note="NSP" FT /db_xref="GOA:M4QNL4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:M4QNL4" FT /protein_id="AGH29868.1" FT /translation="MYFSKNKRSWASTNRRLSSRYFTSKRSISLLRNDGKRRVDISSKF FT QEEIKMSSHRIHETQYGPEFVLGNNSAISTFITYPCLGKTEPSRTRSYIKLKRLRFNGT FT VKIERAHTDVNMNGIPPKIDGVFTIVVVIDRKPHLTSAGGLYTFDELFGARIHSHGNLA FT ITPLLKDRFYIRHVVKRVLSVEKDTTMIDLDGMTTLSNRRYNCWANFRDLDHDSCNGIY FT ANICKNAILVYYCWMSDTVSKASTFVSFDLDYVG" FT CDS complement(1272..2153) FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="GOA:M4QM18" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:M4QM18" FT /protein_id="AGH29867.1" FT /translation="MNSQLVVPPNAFNYVESHRDEYQLSHDLTEIVLQFPSTGSQISAK FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPLRCNIDLHYF FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSDKDIDFAHVGFGTWERKLVRCASTNKFGPSGPIEIKAGESWASRSTVGISRSCMD FT SEKSNDLNPYRDLNRLGTTFLDPGESASIVAAQRTQSNITLSLAQLNDIVRTTVQECIN FT TNCTPSEPKSLK" XX SQ Sequence 2498 BP; 741 A; 448 C; 502 G; 807 T; 0 other; actggatggc cgcgcgatgt ccgtcctctc gctaaatcct gaccctccac gtggctattc 60 tatttaattt agcgagaatt tgaggtccgc aaatgagttg agcgcttatt ttgagttccg 120 ctaacggatg gctgccacgt gcacatatct attaccgtta aatataatat gataagcgga 180 actttattcg tacgatgaca actgtattgc actgacattg tattattcat atttctgccg 240 aaatattaat ctacatggtc aatatattat ttttgactat cgtacaggat atgctaggtg 300 taccaattaa atgtggactt cattaacaaa ttaacgttaa ctacaataag ttggtctata 360 taagttggct gttaataatt tcgacttttg tccacagtta atttattaat atgtatttct 420 ctaaaaataa gcgtagttgg gcgtctacta atcgacgtct atcctcacga tattttacct 480 ctaaaaggtc aattagcttg ttacgtaatg atggtaaacg tcgagtggat atttctagca 540 aattccagga agaaattaag atgtcgtcgc atcgaataca tgaaacacaa tatgggcctg 600 aatttgtatt aggtaataat tcggcgatat ccacatttat tacgtatccc tgtcttggca 660 agacagagcc cagtcgtacg aggtcatata tcaaattaaa acgcctgcgt tttaacggca 720 ctgttaaaat tgaacgtgca cacacagatg tgaatatgaa tgggatacct cccaagattg 780 atggagtatt tactattgtc gttgttatcg atcgaaaacc gcacttgacc tctgctggtg 840 gtctctacac attcgacgag ctgtttggtg ctaggattca cagtcatgga aatttggcaa 900 taactccatt gttaaaggat cgtttttaca tccgtcatgt cgtcaaacgt gtgttgtccg 960 tggagaagga tacgactatg attgatcttg atgggatgac aacattgtct aataggcgtt 1020 ataactgttg ggctaatttt agggaccttg atcatgactc atgtaatggt atttatgcaa 1080 atatttgcaa gaacgccata ttagtctatt attgttggat gtctgataca gtgtccaagg 1140 catctacatt tgtgtcattt gacctagatt atgttggata aatttatata taaatttgca 1200 ttttaatttg tcattaagca acatataata agacattgtt gaacaatttg ctattaacta 1260 taaattataa tttatttcaa agactttggt tccgaaggtg tacagttggt gttaatacat 1320 tcttggacag ttgtcctaac aatatcattt aactgggcta acgataacgt aatgttagac 1380 tgcgtccttt gtgccgcaac gattgaagct gattcacctg ggtcgagaaa tgttgtgccc 1440 aatctgttta ggtccctata tggattgaga tcgttgctct tttcagagtc catacaagat 1500 ctgctaatac caactgtact tctggaggcc catgattctc cagccttaat ttctattggg 1560 cccgaaggcc caaatttgtt agtcgaagca catctgacta actttctctc ccatgttccg 1620 aacccaacat gagcaaagtc gatatccttg tctgaaaact gcttcgacaa tatcttcact 1680 gttggtgccc ggaaagggat atctacagag tgtttagctg tggatagttt taacttgccc 1740 ttgaattttg cgaaatgtgt tctttgatgt acgtttgtat cgctaaccct gtagtatagt 1800 ttccatggaa tggggtcttt aagcgagaag aaagacgctg agaaataatg taagtctatg 1860 ttacatctaa gagggaaagt ccatgacgcc tgcaatgact cgttgtccgt cattcgtttg 1920 tcatgaattt caactatgac agacccagtt gcatttatag gcacttgctg tctgtattca 1980 atgacacaat ggtcgatttt catacagctg cgactaagtt tagcacttat ttgagatccc 2040 gtagaaggaa attgtagaac aatttcagtc aagtcatgag acagctgata ttcatcccgg 2100 tgtgattcaa cataattaaa agcatttgga ggaacaacta actgagaatt cattatagag 2160 aaaaatggct gcgcagctga aagcaaatga aatcgataag caaaaaatga ataaacaaca 2220 ggatagttat agatgaagat agatagtctg cgctgtatgt gtctatgttg taaggaagct 2280 taacaagtaa tttattataa gatgttatac acgcttctat ttataagcaa caacatataa 2340 taagtattta atatgaaaat ggcattttgg taaataaggt agaggacacc agggattgct 2400 ctcaacttct gtgctatttg ctggtgtcct ggtgtcccat ttatactaga accctctagg 2460 ttaatctcag gggcaaaagc ggccatccat ataatatt 2498 //