ID KC706539; SV 1; circular; genomic DNA; STD; VRL; 2665 BP. XX AC KC706539; XX DT 24-MAR-2013 (Rel. 116, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Sida yellow leaf curl virus isolate BR:Coi2:07 segment DNA-A, complete DE sequence. XX KW . XX OS Sida yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2665 RX DOI; 10.1128/JVI.00155-13. RX PUBMED; 23487451. RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A., RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A., RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.; RT "Brazilian begomovirus populations are highly recombinant, rapidly RT evolving, and segregated based on geographical location"; RL J. Virol. 87(10):5784-5799(2013). XX RN [2] RP 1-2665 RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D., RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P., RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.; RT ; RL Submitted (15-FEB-2013) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, MG 36570-000, Brazil XX DR MD5; 21b99134715a3f75b6872146cedefd1e. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2665 FT /organism="Sida yellow leaf curl virus" FT /segment="DNA-A" FT /host="Sida rhombifolia" FT /isolate="BR:Coi2:07" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2007" FT /db_xref="taxon:536083" FT CDS 255..1010 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:M4QMZ1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M4QMZ1" FT /protein_id="AGH29623.1" FT /translation="MPKRDPSWRPVAATSKVSRTSNFSPRGGGGPKFNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVLCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1007..1405) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:M4QJA0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M4QJA0" FT /protein_id="AGH29624.1" FT /translation="MDSRTGELITVPQAENGVYTWEITNPLYFKIYHVEDFLYTTTRVY FT HIQIRFNHNLRRALDLHKAYLNFQVWTTSLTASGTTYLIRFRHLVMLYLDILGVITVNN FT VIRAVRFATDRSYVRYVLENHSIKFKLY" FT CDS complement(1152..1541) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:B3GNA3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B3GNA3" FT /protein_id="AGH29626.1" FT /translation="MLNSSSSTPPCIKPQHRAAKKRGTRRRRIDLECGCTIYVHISCSN FT HGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGLPVHDDQSVPHPDPVQSQPQESI FT GSPQGISQLPSLDDFPDSFWNDLFD" FT CDS complement(1462..2532) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:B3GNA4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B3GNA4" FT /protein_id="AGH29625.1" FT /translation="MPRNPQKFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSVVKPTY FT IRVAREEHSDGFPHLHCLVQLSGKSNIKDVRFFDLTHPRRSAGFHPNIQAAKDTNAVKN FT YITKEGDYCESGQYKVSGGTKGNKDDVYHNAVNAATPGEALDIIKAGDPKTFLVNYHNV FT KANLDRIFMKSPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPVSLIVEGGS FT RTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVNPQYLKLKHWKELIGAQKD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGVSYKDYLDKEENAALKSWTLHNAKFIFLDSP FT LYQTSTQSGEEERNSP" FT CDS complement(2058..2453) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="UniProtKB/TrEMBL:B3GNA5" FT /protein_id="AGH29622.1" FT /translation="MKLFRCFNPFHGQSLNPHTYESPERSTPTASLIFTVLSNSPASPT FT SRMLDFSTSLTPDGLPDFTPIFRQPKTPTPSRITSPKRVIIVNPDSTRCLGEQRGIKTT FT YTITPSMQLLRERLLTLSKPETPRLSS" XX SQ Sequence 2665 BP; 652 A; 594 C; 664 G; 755 T; 0 other; actggatggc cgcgcgattt ttggtgtccc ccccctacgt ggcgctctgg tggccgctca 60 aatcccctcc ccccctggtg tggagtcccc ctttgccgcg cgctttcctc ctttaatttg 120 aattaaagga tttaaccttt gtcggtccaa ttataatgcg cctgaggagc ttagatattt 180 gtgtaagact tcgttactaa gttttatgaa ccctataaaa ctaaagcaag catgacgtca 240 gtatgtaatt cggaatgcct aagcgggatc cctcatggcg cccggtggcg gcaacctcaa 300 aggtaagccg cacttccaat ttctcacctc gtggaggtgg aggcccaaaa ttcaataagg 360 cctctgaatg ggtcaacagg cctatgtata ggaagcccag gatatatcga acgctgagaa 420 cgccggatgt tcctagaggc tgtgaagggc cctgtaaggt ccaatcctat gagcaacgtc 480 acgatatctc ccatgtgggg aaggtactgt gcatatctga tgtgacacgt ggaaacggta 540 ttactcaccg tgtcggtaag cgtttctgtg ttaagtctgt gtatatttta gggaagatat 600 ggatggacga gaacatcaag ctcaagaacc acacgaacag tgtcatgttc tggttggtca 660 gggaccgtag accgtatggg accccgatgg actttggcca ggtgttcaac atgttcgata 720 acgagcccag cacggcaacc gtgaagaacg atctgcgtga tcgtttccag gtgatgcaca 780 agttctatgc caaggtcacg ggtggacagt atgccagcaa tgagcaggcg ctggtcaagc 840 gcttctggaa ggtcaacaat catgtggtgt acaatcatca ggaagctggg aagtatgaga 900 atcacacgga gaacgcttta ttattgtata tggcatgtac tcatgcctct aaccctgtgt 960 atgcaacgct taagattcga atctatttct acgattcgat cacgaattaa taaagcttga 1020 attttattga atgattttcc agtacatatc tgacatatga tctgtcagtt gcgaaacgaa 1080 cagctctaat tacattatta accgtaatta ctcctaatat atctaaatac aacatgacta 1140 aatgtctaaa cctaatcaaa taagtcgttc cagaagctgt cagggaagtc gtccagactt 1200 ggaagttgag atatgccttg tggagatcca atgctctcct gaggttgtga ttgaaccgga 1260 tctggatgtg gtacactctg gtcgtcgtgt acaggaagtc ctctacgtgg tatatcttga 1320 aatacagggg atttgttatc tcccaggtat agacgccatt ctctgcttga ggcacagtga 1380 tgagttcccc tgtgcgtgaa tccatggttg ctgcaactga tgtggacgta tatggtgcac 1440 ccgcactcga gatcaatcct tctacggcga gttcctctct tcttcgccgc tctgtgttga 1500 ggtttgatac aggggggagt cgaggaagat gaatttagca ttgtggagtg tccacgattt 1560 tagggctgca ttttcctctt tgtcgaggta atctttataa ctgactccct ccccaggatt 1620 gcagagcacg attgatggga tacccccttt aatttgaaca ggcttgccgt acttgcaatt 1680 tgactgccaa tccttttggg ccccaatcaa ttccttccag tgctttagct ttaggtattg 1740 cggattgacg tcatcaatga cgttatattc cacttcattt gaataaactt tggaattgaa 1800 gtccagatgg ccgctcaggt aattatgtgg gcctaatgca cgagcccaca tcgtcttacc 1860 agtccttgac ccaccttcta ctatcaaact aactggcctc aatggccgcg cagcggaacc 1920 tctcccaaaa tactcatcgg cccactcttg catctcgtct ggcacgttag tgaatgagga 1980 gaggggaaat ggagggaccc atggctccgg agacttcatg aatattctgt ccaggttagc 2040 cttgacattg tgatagttta cgaggaaagt cttggggtct ccggctttga taatgtcaag 2100 agcctctccc ggagtagctg cattgacggc gttatggtat acgtcgtctt tattcccctt 2160 tgttccccca gacaccttgt actgtccgga ttcacaataa tcaccctctt tggtgatgta 2220 attcttgacg gcgttggtgt ctttggctgc ctgaatattg gggtgaaatc cggcagaccg 2280 tctggggtga gtgaggtcga aaaatctaac atccttgatg ttggacttgc cggagagttg 2340 gacaagacag tgaagatgag ggaagccgtc ggagtgctcc tctctggcga ctcgtatgta 2400 tgtgggttta acgactgacc atggaaggga ttgaagcatc tgaagagctt catctttggg 2460 tatatcgcac tggggatatg ttaggaatat gtttttggca gctagtctga acttctgagg 2520 atttcgtggc atatttgtaa atattgatga ggacaccagg gatggttctc aacttctgtg 2580 atattttctg gtgtcctggt gtccaattta tactagaaag ctctaggtta gtaccagggg 2640 caaaagcggc catccatata atatt 2665 //