ID KC589005; SV 1; linear; genomic RNA; STD; VRL; 6341 BP. XX AC KC589005; XX DT 20-MAY-2013 (Rel. 116, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Lone Star virus isolate TMA 1381 segment L, complete sequence. XX KW . XX OS Lone Star virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; unclassified Peribunyaviridae. XX RN [1] RC Publication Status: Online-Only RP 1-6341 RX PUBMED; 23637969. RA Swei A., Russell B.J., Naccache S.N., Kabre B., Veeraraghavan N., RA Pilgard M.A., Johnson B.J., Chiu C.Y.; RT "The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus RT Found in the Amblyomma americanum Tick"; RL PLoS One 8(4):E62083-E62083(2013). XX RN [2] RP 1-6341 RA Swei A., Russell B.J., Naccache S., Veeraraghavan N., Pilgard M.A., RA Johnson B.J.B., Chiu C.Y.; RT ; RL Submitted (07-FEB-2013) to the INSDC. RL Viral Diagnostics and Discovery Center, University of California, San RL Francisco, 185 Berry St, San Francisco, CA 94107, USA XX DR MD5; 4e0911d1b512bdea5af247f7e052a06f. DR EuropePMC; PMC3639253; 23637969. XX CC GenBank Accession Numbers KC589005-KC589007 represent sequences CC from the 3 segments of Lone Star virus isolate TMA1381. CC ##Assembly-Data-START## CC Assembly Method :: PRICE v. 0.13 CC Assembly Name :: Lone Star Virus CC Coverage :: 1654 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6341 FT /organism="Lone Star virus" FT /segment="L" FT /host="Amblyomma americanum" FT /isolate="TMA 1381" FT /mol_type="genomic RNA" FT /country="USA:Kentucky" FT /isolation_source="tick found on Marmota monax" FT /collection_date="20-Jun-1967" FT /note="genotype: Kentucky" FT /db_xref="taxon:1219465" FT CDS 17..6274 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:R4NUK2" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR022531" FT /db_xref="InterPro:IPR029124" FT /db_xref="UniProtKB/TrEMBL:R4NUK2" FT /protein_id="AGL50921.1" FT /translation="METRIRNEVIPFPRRNNITAEGLVYLAHLDDSRLPEFSITPQEDS FT LLLEIDEIPESISQVGSSIIVGHQRFEVGKVSTLIHDFTFAAIAEETDKPLSRHFPIIN FT DGEDHLTPDLIIDASATEKRVIEFATHRGPGVRGVLNYYNQKIEKYTRPLAARQERTQW FT DISLSCIAVGYDHVVSDLTLSQATVDELVYRFRFASAVFNQILVAFPELAPKVSEEISS FT AERAGRECLNFLTRTFIEEPEGESLLENFPLGSKRYLDAFLENSEDEQYLKRVFAGTFQ FT ETLDEIRGEHILEGHRRGPALERNGEEASSQMAQLVKDQLDAYLKQKVKQDESKFKSTI FT KIPGWLIPDTPRTIDIGINHKDLEGMSDETVTARVWKAALTEVIFTPQNSWQEDLEREY FT AIATSRLQVDPEGENTKQDYHRVKINLPAQDWVSLAARGLEGKSMRQEELVRKTDEASH FT TVLSPHHDISGISSCIESNNWFHHFKLGQEENLYGVLDVLISSAMEVATDGQQVGEKIL FT KAFKDYRNLNCVHWASMVTQIATELAIAAKQSCKRHHFIIKKVPNFPIYMLIKTSRSGS FT HVFYSLAARTNSVKHELSGRVFKEYERSGNWFITEFNSVKLCKVENMLKLPMLIVALIS FT YSQESDEKVVTKLSRPTTFTRKLVTTAIMVCMEDKALTEELITIQRYIQMEGFVTEPLL FT PKPHKMLEKLSVPLRTTLQVFLFQQCLKAIRSISRTPYRRMCKAGEVSWRGCFSGVIGM FT SCSPEQMVNSWYLGYLKNKDEDTEVNMLGAMYEKIVKVEEKRPLDSSNLLGGDPLKPNM FT HEFSGSFIKFMARALNDEIRGRKGHNWQEEITTQFYRSIGSVTLDQLATLKASSSFGPE FT WENFDDVRLKEYHRVKVLERISELVQEGHTFYTDTIGQCFRVVLEDGCMRICLFKKAQH FT GGLREIYVLRLEERLIQFGIELLARKINEAVGHETISVPSRKEEILDTHQARAAKACGE FT GTLITVCSSNDARTWNQGHYTTKFAFLMCELMPRELHGFIWMSCAIFRKKKMMLNLDYL FT NSMCRKRPEASGFKQRLYDGFSGNEEVPWIQKGKTFIQTETGMMQGILHLTSSLFHAAY FT QAAIRKILKAKLKTTINSRVLIDVIEGSDDSAIVISAAVKSDDEERKFRLMASVLLHWV FT KRLGLYAGIYMSPKSTIGCIDVCEYNSEFRFSRLMCRPTLKWVTACLNIPEVEKIADRQ FT ESFSNLLTSVLEGGGTSSLCSVLQLTQAWCHYVLLGLWSSCVFKLIAPYMEESKNPDIG FT FFILDCPVSAGILGFRHNLWRYVRKTKLSAIFAKILDNKGHEGFTLTSGGSLSKCHLIR FT WGDRKKLDGIKNRTGMNLDWRILTDEDPSLLYKPPQNNHEVKVAISLKLDSPGVAESLS FT KGNVLGRVIASSVYILQRRCITVRSQRRKYTLAELMLETEDVGRTLTLAEENALFGDII FT ALEKNEALCQSYGEAIGNFIGKSREMRRAKVEVLSADEAFRAPPVKIMGDVFFGTTKSH FT MGQNMLARELGYLKESFPWISADPHECLSNSPFTCQAELKTFFEKLEQKTRKVRMIGAA FT VFTRMGQTSLDNLLRFNFQKNFELTRQGNGEYEVVNEDEKFCKHVITMILSGPFSNERK FT SQMIVDFLKISDLSPPKTLLKKSRTNVLRVIRAWLEGHSRIEELVERSMDGICGAFTVR FT QKISRDSSGQLQYRGLGVWTGRIEGTDCRLQIENSGPGEQVLKQVTISSDKNLSDFLSG FT LERLCKELRVTNPRKSWAKQKKQDLSLIGALVDFKLESRLSCAGCPLRLVPASEGFLKE FT MMDRSNISLIVRGDILNIKADLGDGRLITMISYKASGQDADQEQGARFFSRREVLKTHL FT SWSVREPYLSWISLRPVPDALVPRLEEEIMGKRRTEGIDAKQLKDVYQRCCKSSLRRKG FT LTVGQFSTVKLRIEDTSDDVEINLLELLEEEVDFTSTLERTSLDMLEDSIEDMEVFFGE FT EDLEIFDFTELISRADPLAYHGFCDRIIEDFVKKLGHDVIRRAIQKREMLQTDAELVKK FT LFDCIGENPEELEIVHDELDEYASSGQITEEVWG" XX SQ Sequence 6341 BP; 1946 A; 1300 C; 1545 G; 1550 T; 0 other; acacaaagac gccaacatgg aaactaggat acggaatgag gtgatcccgt tccccaggag 60 gaacaacatc actgctgagg gcttggtgta tcttgcccac cttgacgact ctagactccc 120 agaattcagc atcacacccc aggaggactc tcttcttctc gagatagatg agatcccaga 180 aagtatcagt caagtgggca gcagcataat tgtggggcac caacggtttg aggtcggaaa 240 ggttagcacg ctaattcatg attttacttt tgcagccatt gctgaagaaa ctgataagcc 300 cttatcaaga cattttccaa tcataaatga tggtgaggac catctaacac cagatctcat 360 cattgatgct tccgccacgg agaagagggt gatagagttt gcaactcaca gaggcccagg 420 ggtgaggggt gtgttaaact attacaatca aaaaattgaa aagtacacaa gaccactggc 480 agcaaggcag gaaagaacac aatgggacat atctttgtct tgtattgcag tagggtacga 540 ccatgtggtg tcagatctca cactatcaca agccactgtt gatgaactag tgtacagatt 600 cagatttgct tctgctgttt tcaatcagat ccttgtagct ttcccagaac tagctccaaa 660 agtctctgag gaaatatctt cggctgagag agctggaaga gaatgcctga acttcttgac 720 aagaaccttc atagaggaac ctgaaggcga gagcctccta gagaactttc ctctagggtc 780 caaaagatat ttggatgctt tccttgagaa ttccgaagat gagcagtatc tcaagagggt 840 tttcgcaggg actttccaag aaaccctaga cgagataagg ggagaacaca ttctagaagg 900 acacaggagg ggcccagcct tggagagaaa tggtgaggaa gcatcatcac aaatggcaca 960 actagttaag gatcaacttg atgcttacct aaaacagaaa gtgaagcagg atgagagtaa 1020 attcaaatca actatcaaga ttcctggctg gctgattcca gacacaccga gaaccattga 1080 tataggcata aaccacaagg atctagaagg catgtctgat gaaactgtca cagctagagt 1140 ttggaaggca gctctaactg aggtcatctt cactcctcag aacagctggc aagaggacct 1200 tgagagagaa tatgcaatag ctaccagtag gctgcaggtt gacccagagg gggaaaacac 1260 caaacaagac taccatagag tgaaaataaa tctccctgct caagactggg tgtctcttgc 1320 tgccagaggc ttagaaggga agtccatgag acaagaagag ctcgtcagaa aaactgatga 1380 ggcatcccat actgtcctga gcccacacca tgacatctct ggcattagtt cctgcattga 1440 gtcaaacaac tggttccacc acttcaagtt aggacaggaa gaaaacctct acggggttct 1500 ggatgtcctg atatcatcag caatggaagt agccactgat ggtcaacaag tgggtgaaaa 1560 gattctgaag gctttcaagg attacagaaa cctcaactgt gttcattggg caagcatggt 1620 tacccagatc gcaacagagc tagccattgc tgcaaaacaa agctgcaaaa gacatcactt 1680 catcataaaa aaagtcccca acttccccat atatatgttg atcaaaacca gcaggtcagg 1740 atctcatgta ttctacagct tagctgccag gaccaactct gtcaagcacg agctctcagg 1800 cagagtcttc aaagagtacg agcgttcagg gaactggttt ataactgagt tcaattctgt 1860 taagttgtgc aaggtggaga acatgctcaa gttgcctatg ttgattgttg ccctgatttc 1920 atactcacaa gagtcagacg aaaaagtggt caccaaactg tctagaccaa ccacattcac 1980 aagaaagcta gtgaccacag ccattatggt gtgtatggag gataaggcct taactgagga 2040 attgattacc atacagagat acatccagat ggaggggttt gtgacagaac ctctactgcc 2100 caagccccac aagatgttgg agaagctctc tgtaccactc cgaactacac tgcaagtttt 2160 cctctttcag cagtgtctca aggcgatcag atccatttca agaacccctt ataggaggat 2220 gtgcaaggca ggcgaggtgt cctggagagg ttgcttctct ggtgtcatcg ggatgtcctg 2280 ctcccctgag cagatggtga actcatggta cttggggtac ttaaagaata aagacgagga 2340 tacagaagta aacatgctgg gtgcaatgta tgagaagatt gtgaaagttg aagaaaaaag 2400 gcccctggac tcctctaacc tgctaggtgg ggacccatta aaacccaaca tgcatgaatt 2460 ctcaggctcc ttcatcaaat ttatggcgcg tgctctaaat gatgagattc gaggtcgtaa 2520 agggcacaac tggcaggaag agattacaac ccaattctat cgatctattg gttctgtaac 2580 ccttgaccaa ttagcaactt tgaaagcctc aagctctttt ggcccagaat gggaaaactt 2640 tgatgatgtt aggctaaagg aataccacag ggtcaaggtg ctagagagaa tctctgaact 2700 ggtccaggaa ggccatacct tctacacaga cacaataggc caatgtttta gagtagttct 2760 tgaagatggg tgcatgagaa tttgcttgtt caaaaaagca caacatggtg gactgaggga 2820 gatatacgtc ttgagactgg aagagagact catccaattt gggattgagt tactagctcg 2880 caaaataaat gaggctgttg gtcatgagac catcagtgtg ccaagtagaa aagaagaaat 2940 tctggacact catcaagcca gagctgcaaa agcatgtggt gaaggcacac tcatcactgt 3000 ctgtagttct aatgatgcca gaacttggaa tcaagggcac tacaccacaa aatttgcctt 3060 tctcatgtgt gagctcatgc ctcgagaact gcacggcttc atctggatgt cttgtgctat 3120 cttcagaaag aagaagatga tgctaaacct ggactatcta aatagcatgt gcagaaagcg 3180 gcctgaggcc agtgggttca aacaaagact ttacgatggt ttctctggga atgaggaagt 3240 tccctggata cagaaaggga aaaccttcat ccaaacagag acagggatga tgcaaggaat 3300 tttgcattta acctctagct tgtttcatgc agcctatcaa gcggctatca ggaaaatttt 3360 aaaggcaaaa ctgaaaacaa caatcaacag cagagtcttg atagatgtga ttgaaggctc 3420 tgatgatagt gcaattgtga tatctgcagc tgtcaagagt gatgacgaag aaagaaaatt 3480 taggctgatg gcttcagttt tgctgcactg ggttaaaagg cttggccttt atgccggaat 3540 ttacatgtcc cccaaaagca caattggttg cattgatgtg tgcgagtaca actctgagtt 3600 tagattttcc agactcatgt gtaggcccac cctcaagtgg gtcacagcat gtctaaacat 3660 tccagaagtt gagaaaatag cagacaggca agagtcattc tctaatttgt tgacctctgt 3720 tctagaagga ggtggaacat caagtttatg ttcagttcta caactaacac aggcatggtg 3780 tcactatgtc cttctgggcc tatggtcatc ctgtgtgttt aagctgatag cgccttacat 3840 ggaagagtca aagaatcctg acataggctt tttcattctg gattgcccag tctcagcagg 3900 gattttaggt tttagacaca acctctggag gtatgttaga aaaaccaagt tatcagcaat 3960 ctttgccaaa atactagaca ataagggtca tgaaggcttc actctcacct caggagggtc 4020 tctctccaaa tgccatttga tcagatgggg agacagaaag aaactagacg gtattaagaa 4080 ccgaacaggt atgaacttag actggcggat attaacagat gaggacccct ctcttctgta 4140 caaaccacct cagaacaatc atgaggtgaa ggtggccatc agtcttaaac tagatagtcc 4200 aggagttgca gagagtttgt ctaaaggcaa tgttcttggc agagttatag catcatcagt 4260 ttacatttta cagagacgtt gcatcacagt aaggagccag aggaggaagt acacccttgc 4320 agaactgatg ctagagacag aagatgttgg gaggacttta actctagctg aagagaatgc 4380 cttgtttggt gatattatcg cattggagaa gaatgaggcc ctgtgtcaat cctatggaga 4440 ggcaattggg aactttatag gcaagtccag agagatgagg agggccaagg ttgaagtcct 4500 atccgctgac gaagcattta gagcacctcc tgtaaagatc atgggggatg tcttctttgg 4560 aacaactaaa agccacatgg ggcaaaacat gttggccagg gaacttggtt atcttaaaga 4620 aagcttccca tggatatctg cagaccctca tgagtgctta agtaactctc cattcacctg 4680 tcaggccgag ttgaaaactt tctttgagaa actagaacag aagactagga aggttaggat 4740 gataggtgct gctgttttca caaggatggg tcaaaccagc ttggataacc tattgagatt 4800 caacttccaa aaaaactttg aactaactcg acaggggaat ggcgagtacg aagtggtaaa 4860 cgaagacgaa aagttttgca aacatgtcat aactatgatc ctatcaggcc ccttctcaaa 4920 cgagagaaag tcacagatga ttgtggattt cctcaagata agtgacctct cccctcccaa 4980 gacccttctt aaaaaaagca gaaccaatgt cttgagggtc atcagagctt ggctagaagg 5040 ccattccaga attgaagagc tcgttgagag aagcatggat ggcatatgtg gagcctttac 5100 tgtcagacag aaaatcagca gggatagcag tggtcaactc cagtataggg gactgggggt 5160 ctggactgga agaatagagg gtacagactg tagactacaa atagagaact ccggtccagg 5220 ggaacaagtt ttaaagcaag ttaccatctc ctcagacaaa aatttatctg atttcctgtc 5280 tggtctggaa cgcctctgca aagaattaag agttaccaac ccaaggaaat cctgggcaaa 5340 gcagaagaag caggatttga gcctgatagg agctcttgtt gactttaaac ttgaatcacg 5400 actctcttgt gcgggctgtc ctctgaggct tgtacctgca tctgagggtt ttctgaaaga 5460 gatgatggat aggtccaaca tttctctaat tgtaagaggt gacattctca acatcaaagc 5520 agacttagga gatggcagac ttatcaccat gataagttac aaggcatctg gtcaggatgc 5580 agaccaagag caaggagcta gatttttctc ccgaagagaa gtgcttaaga cacacctatc 5640 atggtcagtt agggagccat accttagctg gatcagtttg cggccagtcc cggatgcctt 5700 agttcccaga ttagaagagg agatcatggg aaagagaaga actgaaggca ttgatgcaaa 5760 acaactcaag gacgtctacc aaaggtgctg caaaagttcc ttaagacgaa agggcctcac 5820 tgttggtcag ttctcaaccg tgaaactcag gattgaagac actagtgatg atgtggagat 5880 caatcttctg gagctattag aagaagaagt tgattttaca tccaccttag agaggacttc 5940 tcttgatatg ctagaggact caatcgagga tatggaggta ttcttcggtg aggaagactt 6000 agaaattttt gatttcacag agctcatatc tcgtgcagat ccactagcct accatggctt 6060 ttgtgaccgc attatagaag acttcgtgaa gaaattagga catgatgtca tacggagagc 6120 catccaaaag agagagatgc ttcagacaga tgccgagctt gtgaagaagc tttttgattg 6180 cataggcgag aaccctgaag aactagagat tgtccacgat gagctggatg agtatgcatc 6240 ctctggccaa ataacagagg aggtctgggg ttagtgatca ctcttaccgt gtctctcctg 6300 ggaattcagg ggaggttatc tggtgttggc ggtctttgtg t 6341 //