ID KC568202; SV 1; linear; genomic RNA; STD; VRL; 6851 BP. XX AC KC568202; XX DT 27-JUN-2013 (Rel. 117, Created) DT 27-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Actinidia virus X isolate L5 RNA dependent RNA polymerase gene, partial DE cds; and triple gene block protein 1, triple gene block 2, triple gene DE block protein 3, and coat protein genes, complete cds. XX KW . XX OS Actinidia virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6851 RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.; RT "A novel potexvirus isolated from Actinidia"; RL Unpublished. XX RN [2] RP 1-6851 RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.; RT "Viruses of kiwifruit (Actinidia species)"; RL Unpublished. XX RN [3] RP 1-6851 RA Blouin A.G., Cohen D., Chavan R.R., Pearson M.N., MacDiarmid R.M.; RT ; RL Submitted (31-JAN-2013) to the INSDC. RL Bioprotection, The New Zealand Institute for Plant & Food Research Limited, RL 120 Mt Albert Road, Sandringham, Auckland 1025, New Zealand XX DR MD5; 1e5abcd40f3e035a50c47cc4b5dfb9c9. XX CC ##Assembly-Data-START## CC Assembly Method :: Geneious Pro v. 5.6.5 CC Sequencing Technology :: Sanger dideoxy sequencing; Solexa sRNA CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6851 FT /organism="Actinidia virus X" FT /host="Actinidia chinensis 'Hort16A'" FT /lab_host="Nicotiana occidentalis" FT /isolate="L5" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="2005" FT /db_xref="taxon:1331744" FT CDS <1..4825 FT /codon_start=2 FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:R9WRQ8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:R9WRQ8" FT /protein_id="AGO03686.1" FT /translation="LSEAAYTHMRPVLKEALVNCPYALTDAEADSLENLGITINPSATQ FT THTHAACKAIENRMLEIVGSHLPKEACTMLFLKRSKLRYMRRAAALKDTFVNKDVEPKD FT LFRYDSDTIRSKLQGIEHRIAYISDTLHFMSRQELVQLFVDSPNLETLLATVVLPVEAL FT HRRTTLYPTLYSVNYSPKGFEYIPGNHGGGAYFHPYSTLEWLKVRQIHAYDYYALDPQI FT TLTFQMVESLGANHLFIIRRADMKTPAMRTFCRDSLVTLPKVFCPDSMNANRPLEKKRA FT MQLMLYCKSVKQVTERDALWRERAMQLMLYCKSVKQVTERDIYAKIRQLIPTQELELYE FT PDEIVHLANYFYFMAHLDSITCFEDMLSNNVWRRLTLPIRTNFRQLVEFFKGKSDFDKL FT LQALKWETFTYSLEPEDYAEKFSSHRAREFAEMTDTTVGKAAETLRYVARHPELVQPED FT FASQPIPDPLENCSHYIQIDPATPKLEVENSPVSPRADAPPPVNQAPPQSLATRPCTGT FT PSTHNSDWQVATIEYLMEQAGGTTSDGRTRVIFHKSTPAAHTLGTTPTTADWPEMLDDI FT AISLPAQPDVCIIEAFHTSRPGRLLPDIPLWAAQQSTVLCFGDLTWSFPCPHEIRTKNG FT DHFTLVDTHLGPHAPTIENCGLRSIVAHFITMGTNLPQTDTPTVWYTTGSDEASTSHPP FT PPTNAPTPAPALHRTVNNNVAPADQSRSVPWVSRVPLLKNHGLDGDQEQLQHDGQIILP FT IQDVHKLPHAAYPREVPHAIQDTMNNIKRYPVAIKLDKHRASSYASDIKNNRTGRLLLQ FT MDQKWKASFANKMQHEDQEVVALHPRGAHEVVGTVIHGCAGSGKSYSVQKWMRTLKEDQ FT NVITVVTPTVLLRNDWHTKLPILTADTFKTFEKAIVQPCNPIVVFDDYTKLPPGMIEAM FT VMHHXNISFIILTGDSRQSTYHELNDEAYISALPEAVEVFAPYCEFYLNATHRNVRDLA FT NKLGVYSERPGKCKINFTSCHLKASKIPILVPSTFKKNAMAEMGHNSMTYAGCQGLTAA FT KVQIVLDNHTSQCSERVIYTCLSRAVDGIHFINTGPTSGDYWEKLGSTPYLKAFIDSYR FT DERTEVYNSQPADDSPTEPDAPLTHFPMAPKPLLEPLVAELPVKEDREIYSATHGFSNA FT IQTEDGVVQLFQHQQAKDETLYWATIETRLAISTPEANLREFNLKKDVGDILFLNYAKL FT MGLPAEPVPFEERLWEISAAEVRNTYLSKAVGNLVNAAARQSPDFPINRISLFLKSQWV FT KKVEKLGAIKVKPGQTIAAFMQETVMLYGTMARYLRKMRQRFQPDNIFINCETTPEDLD FT RFIKTKWNFKRPAHTNDFTAFDQSHDGAMLQFEVIKAKFFNVPPEIIEGYIFIKLNAAI FT FLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIQPDTAQVYAGDDMALDRISIEKATF FT YTLEKQLKLTSKPLFPTQTKGDYAEFCGWVLTPDGLIKQPLKMHASIMLQKKIQNISQS FT ARSYALDLRYAYKMGDTLQEHLTEDEANYHQDSVRQMHLLHQQDVLARGSASPPRETGQ FT EGTSTRTQRRNQTKRRAKVRVATIEEAA" FT CDS 4878..5585 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:R9WW11" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:R9WW11" FT /protein_id="AGO03687.1" FT /translation="MELEYLVNLLDFYGFSRTSRSFSLPLVVHGVAGCGKSTIISKVSC FT AYPKLISASFSPQLIDPDSGRRQSAVDGSAVDLLDEYLAGSNPTVRLAKFCDPLQYDCQ FT SPEEPHYRALHSHRFCPATAQLLNKIFGCHITSKLTISATIRFADAFAEDPEGQVITFE FT PELESLLTAHGCPTTPVADLWGRNIPYVSVYTSSINYALENYRSSLFLALTRHQKQLLI FT FDLDARANTPHEL" FT CDS 5554..5916 FT /codon_start=1 FT /product="triple gene block 2" FT /db_xref="GOA:R9WSN2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:R9WSN2" FT /protein_id="AGO03688.1" FT /translation="MPGLTPPTNFEQVWKIAAIGLLTCGSIYALRANHQPHVGDNLHAL FT PHGGLYRDGTKQITYCSPQKTHAYNHKWTAAAAIAILSLLIFAQSRFAFSNRPDPVRVC FT RHCPQAGADVHGHNHG" FT CDS 5753..6022 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="GOA:R9WU84" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:R9WU84" FT /protein_id="AGO03689.1" FT /translation="MPTTTSGQQQQPSPFFLFLSSHKVDLLLATVLILFVYAVTAPKQA FT PTCTVIITGEAIKVIGCPDPGSVFTNLNIAPWNGVKFPILDFEN" FT CDS 6041..6784 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:R9WTK5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:R9WTK5" FT /protein_id="AGO03690.1" FT /translation="MTDPSKNVSGGPTNPPPKVAAGATPPQGKTPEPTPADTSDPTRGP FT SLSQLRQVKYVSATTSVATPEEIKLLGSLYERMGIDKNDVAPAMWDLARAYADVQSSQS FT AVLVGTTPSNPAITRQALSRQVLTINVTPRQFCSYFAKVVWNMCIDSGIAPANWVKMGL FT QEPERFAGFDFFEAVLSPAALEPEGGLVRQPTMREIQAHALTKAGALARQKIQNGNYIS FT NLAEVTRGRVGGVNTMYAIEEPPEL" XX SQ Sequence 6851 BP; 1830 A; 2059 C; 1515 G; 1446 T; 1 other; actctctgag gcagcataca cccatatgcg tcccgtccta aaagaagctt tggttaactg 60 cccttacgca cttaccgacg cggaagcaga tagtttagaa aacctgggta ttaccatcaa 120 ccccagcgcc acgcagaccc atacccacgc cgcctgtaaa gctatagaga accgtatgct 180 agaaatagta ggcagccacc tacccaaaga agcatgcacc atgttgtttc taaagaggtc 240 taaactaagg tatatgcgcc gggcagccgc tctgaaagac actttcgtca ataaagacgt 300 cgagcctaaa gaccttttca gatatgatag tgacaccatt cgtagcaagc ttcaaggtat 360 agagcatagg atagcgtaca tttcagacac cctacatttt atgtctaggc aggaactagt 420 tcagcttttt gttgattctc caaatttaga aaccctatta gccacagtag tacttcccgt 480 agaagcactc caccgtagga ccaccctcta ccccaccctt tactctgtta attacagccc 540 aaagggtttt gagtacatac ccggcaacca tggcggcgga gcctacttcc atccgtactc 600 cactctggag tggctaaaag tgcgtcagat acacgcttat gattactacg cacttgatcc 660 gcaaatcaca cttaccttcc agatggtcga gagtttgggc gctaaccacc tgttcattat 720 ccgcagggct gacatgaaga cacctgccat gcggaccttt tgccgtgact cactagtcac 780 tctacccaag gttttctgcc cagactcaat gaacgctaac cgccctctgg aaaagaaacg 840 ggccatgcag ttgatgctct actgcaagtc tgtgaagcag gttacggaaa gggatgccct 900 ctggagagag cgggccatgc agttgatgct ttactgcaag tcggtgaaac aggtcacgga 960 gagggacatt tacgctaaaa ttcgacaact catccccacc caagaacttg agttgtatga 1020 gcctgacgaa atagtgcacc ttgccaacta cttctatttt atggcccatc tcgactccat 1080 cacctgcttc gaagacatgt tgtccaacaa tgtctggaga cggctcacct tacccatccg 1140 caccaatttc cgccagctgg tggagttctt caagggtaag tccgacttcg acaagctgct 1200 gcaggcactc aagtgggaga ccttcaccta ctctctggag cctgaagatt acgcagagaa 1260 attctcaagt caccgcgcca gagagtttgc tgaaatgacc gacacgaccg tggggaaagc 1320 ggctgaaaca ctgcgctacg tcgcacgaca cccggagctc gtgcagcctg aggacttcgc 1380 cagccaaccc atacccgacc ccttagaaaa ctgctcccac tacatccaaa ttgacccagc 1440 cacacccaaa ctggaagtcg aaaacagccc cgtttcccct cgcgcagacg cccctccacc 1500 agtaaatcag gccccaccac aatcacttgc cactcgacct tgcaccggga ccccttccac 1560 acacaacagc gactggcagg tggccactat tgagtaccta atggagcagg ctggtggaac 1620 cacatccgat ggccgcacac gcgtcatatt ccataagtct acccctgccg ctcataccct 1680 aggtaccacc ccgaccaccg cggactggcc tgaaatgctg gacgacattg ctatctcact 1740 gccagctcag cctgatgtat gtatcattga ggcatttcac acttcaagac ctggccgact 1800 actcccagac atacccctct gggcggcaca gcaatccact gtcctctgct ttggtgatct 1860 aacttggtca ttcccttgcc cgcacgaaat ccgaaccaaa aacggggatc acttcacact 1920 cgtggacacg cacttgggac cccacgcccc tacgatcgaa aactgcgggc tccggagcat 1980 cgttgcgcac ttcatcacca tgggcacgaa cctcccacag acggacactc ccaccgtttg 2040 gtacacgact ggcagtgatg aagcatccac atcccaccca cctccgccca caaacgcacc 2100 aaccccagca cccgccctgc accgaactgt caacaacaat gtcgcaccgg cggatcaatc 2160 aaggtctgtg ccctgggttt cacgggttcc acttctgaag aaccatggtt tagacggaga 2220 ccaggagcag ctacagcatg acggacaaat cattttgccc atccaagacg tgcacaaact 2280 accccacgca gcttatccaa gggaggtgcc acacgctatt caagacacaa tgaacaacat 2340 caagaggtac cccgtcgcta tcaagttgga caaacataga gcatcatcct acgcctcgga 2400 catcaagaat aacaggactg ggagactctt gctacaaatg gaccagaagt ggaaagcgtc 2460 tttcgcgaac aagatgcagc atgaagatca agaagtggtt gcacttcatc cacggggcgc 2520 ccacgaggtt gttggtaccg tcatccatgg gtgcgccggc tcaggcaaat catactctgt 2580 gcagaagtgg atgaggacgt taaaagaaga ccagaatgtg attacagttg tcacgccaac 2640 agttttgcta agaaacgact ggcacactaa actgcccatc ttgacagctg acactttcaa 2700 aaccttcgag aaagccatcg tccagccttg caacccgatt gtggtttttg acgactacac 2760 caaactcccc ccaggcatga tagaggcgat ggttatgcac cacangaaca tcagcttcat 2820 cattttaact ggtgatagcc gtcagtccac ctaccatgaa ctgaacgatg aggcttacat 2880 ctcggcccta cctgaagctg tagaagtgtt cgcaccttac tgtgagttct acctcaacgc 2940 tactcaccgg aacgttcggg acttagccaa caaactgggc gtctattctg aaaggcctgg 3000 caagtgtaaa attaacttca catcctgcca cctcaaggcc tccaaaatcc ccatcctggt 3060 cccatctact tttaaaaaaa acgctatggc cgagatgggg cacaactcca tgacttatgc 3120 gggctgccaa ggactcacag cggcaaaagt ccaaattgtt ctcgacaatc acaccagcca 3180 atgctccgaa agagtcatat acacatgttt gtcgagggct gtggacggca ttcacttcat 3240 aaacaccggg cccacttcag gggattactg ggagaagctc ggctccacac cgtacctcaa 3300 agctttcatc gactcttaca gagacgagcg gacggaagtg tacaattcgc aaccagctga 3360 cgacagccct accgaacctg atgctccact cactcacttc ccaatggccc ctaaaccact 3420 cctcgagcct ctcgttgctg agctgccagt gaaagaagat agggaaatct actccgccac 3480 ccacgggttc tccaacgcga tccaaactga agatggagtg gtgcaactct tccaacacca 3540 gcaagccaaa gatgagacac tctactgggc cactatagag accaggctcg ccatatctac 3600 gcccgaagct aacctgcgtg agtttaacct caaaaaagat gtcggcgaca tcctcttcct 3660 caactacgcg aaactgatgg gccttcctgc tgaaccagtt ccctttgagg agagactttg 3720 ggaaatctcc gccgctgaag tccgcaacac ctacctgagc aaagcagtgg gcaacctggt 3780 caacgccgcc gcacgccaaa gcccagactt ccccatcaac cgaatatcgc tcttcctgaa 3840 gtcccagtgg gtgaagaaag tggagaaatt gggcgccatc aaggtcaaac caggacagac 3900 gatagcagcc ttcatgcagg aaactgtcat gctatacggc actatggcac gctatctacg 3960 caagatgagg caacggttcc aacctgacaa catcttcatc aattgtgaga caacacctga 4020 agacttggac cgcttcatca agactaagtg gaatttcaaa cgccctgctc acaccaacga 4080 cttcacggca tttgaccagt ctcacgacgg cgcgatgctg cagtttgaag tgatcaaagc 4140 caagtttttc aacgtcccgc cagagatcat tgaaggatac atattcatca agctgaacgc 4200 ggcaattttc ttggggaccc ttgggatcat gcgtctgtca ggagaggggc ccacatttga 4260 tgccaacact gaatgctcca tcgcctacaa cgccactaga ttccacatac agccagacac 4320 agcccaggtc tatgcgggag acgacatggc actggaccga atcagcattg agaaagctac 4380 attttacaca ctggaaaagc aactcaagct cacatccaag cccctcttcc caacccagac 4440 taaaggtgat tacgctgagt tttgcggctg ggtgctgact ccggacggtc tcattaagca 4500 gcctttgaag atgcatgcca gtatcatgct ccagaagaaa atccaaaaca tctcccagag 4560 tgcccgatca tacgcactgg accttaggta cgcctacaaa atgggagata cactccagga 4620 gcatttaact gaagatgaag ccaattacca ccaggattca gtgcgacaaa tgcatctcct 4680 gcaccagcaa gacgtcttgg cacgaggtag cgcttcaccc ccgagagaga ctggacaaga 4740 aggcaccagc acccgaacgc agagacgcaa tcaaacaaag agaagggcaa aggtgcgtgt 4800 agccaccatc gaggaagcgg cttaagcact ctacccggca actctctaat gccgggttaa 4860 gtttcctaga tagtgaaatg gaattagagt acttagttaa tttgttagac ttttacggtt 4920 tcagtagaac gtctaggtct ttctcactcc ctttagtagt acacggcgta gctggctgcg 4980 gcaagtctac catcataagt aaagtctcct gtgcctaccc caagctcatc tccgccagct 5040 tctcaccaca actcattgac ccagactccg ggcgccgtca aagtgctgtg gacggttcag 5100 cagtcgacct ccttgacgag tacttggctg gaagcaatcc cactgttcgc ctagcgaaat 5160 tttgcgaccc tctgcaatac gactgtcaga gccccgaaga gccacactat cgagcactac 5220 actcccacag gttctgcccg gccaccgcac agcttctcaa caaaattttc ggctgtcaca 5280 tcacttccaa gctgaccatc tcagctacca tacgattcgc cgacgcattt gctgaagatc 5340 cagagggcca ggttatcacg tttgaaccag agttagaaag cctcctcaca gcacacggct 5400 gccccaccac ccccgtggct gacctgtggg gacgtaacat accatacgtg agcgtttaca 5460 cctcatccat caactacgcg cttgaaaact accggagctc actattcctg gcactgacac 5520 gacaccagaa gcagttgctc atctttgatc tggatgccag ggctaacacc ccccacgaac 5580 tttgagcagg tgtggaagat cgcggctatt ggtctgctca cgtgtggctc catttacgcg 5640 ctacgggcca atcatcagcc ccacgttggt gacaacttac acgcactacc acacggaggc 5700 ctgtaccgag acggaaccaa gcagataaca tactgtagtc cacagaagac ccatgcctac 5760 aaccacaagt ggacagcagc agcagccatc gccattcttt ctcttcttat cttcgcacaa 5820 agtagatttg cttttagcaa ccgtcctgat cctgttcgtg tatgccgtca ctgcccccaa 5880 gcaggcgccg acgtgcacgg tcataatcac gggtgaagct attaaagtca taggttgccc 5940 cgatcccggt tctgtgttta ctaacctaaa catagcccca tggaacgggg ttaagtttcc 6000 tattttagat tttgaaaatt aattaagttt ctaattaagt atgactgatc ctagcaagaa 6060 tgtctccggt ggccccacca acccgccccc aaaagttgcc gccggcgcta ccccgcctca 6120 gggcaagact cccgaaccaa cgcccgccga cacttccgac cccacccgtg gcccctcctt 6180 gagccagctc cgccaagtca aatacgtgtc agccaccacg tctgtggcaa cacctgaaga 6240 gatcaagctc cttggcagcc tgtacgagcg catgggtatc gacaagaacg atgtggcccc 6300 tgcgatgtgg gacctggcta gagcctacgc cgacgtgcaa tccagccaat ccgctgtttt 6360 agttggaacc acaccatcta acccagccat cacacgccag gccctcagca ggcaggtgct 6420 caccatcaat gtcacaccac gccaattctg cagctacttc gctaaggttg tctggaacat 6480 gtgcattgac tctggcattg caccggccaa ttgggttaag atgggtttac aggagccgga 6540 acgtttcgcc ggatttgact tcttcgaggc cgtgctttcc cccgctgctt tagagccaga 6600 aggaggactt gtgaggcagc ccactatgcg cgaaattcaa gcccatgctc ttaccaaggc 6660 tggcgctctc gcccgtcaga agatccagaa tggcaactac atatccaact tggccgaagt 6720 cacacgcgga cgcgtcggcg gagtcaacac catgtacgcc atcgaagagc caccggagct 6780 ttaaataaca cttgcaaact taaataagtg tgtggttttc tacagtttat tttccaccta 6840 cctagtagtc a 6851 //