ID KC282641; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC KC282641; XX DT 20-FEB-2013 (Rel. 115, Created) DT 20-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Ageratum yellow vein virus clone R3, complete sequence. XX KW . XX OS Ageratum yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2753 RX DOI; 10.1007/s11262-013-0888-0. RX PUBMED; 23397078. RA Shahid M.S., Yoshida S., Khatri-Chhetri G.B., Briddon R.W., Natsuaki K.T.; RT "Complete nucleotide sequence of a monopartite Begomovirus and associated RT satellites infecting Carica papaya in Nepal"; RL Virus Genes 46(3):581-584(2013). XX RN [2] RP 1-2753 RA Shahid M.S., Yoshida S., Khatri-Chhetri G.B., Briddon R.W., Natsuaki K.T.; RT ; RL Submitted (02-DEC-2012) to the INSDC. RL Tokyo Nodai, Tokyo University of Agricultrue Japan, 1-1-1 Sakuragaoka, RL Setagaya-Ku, Tokyo, Japan, Tokyo 156-8502, Japan XX DR MD5; b37f93de3ea2ccdb42afd5e1d3ceaea0. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Ageratum yellow vein virus" FT /host="Carica papaya" FT /mol_type="genomic DNA" FT /country="Nepal" FT /isolation_source="leaves" FT /collected_by="B.J. Pudashini and K.T. Natsuaki" FT /collection_date="26-Nov-2010" FT /clone="R3" FT /db_xref="taxon:44560" FT gene 133..483 FT /gene="V2" FT CDS 133..483 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:M1L5S1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M1L5S1" FT /protein_id="AGF37242.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEQTYSPDTIGHDLIRDL FT ISVIRARNYVEASRRYCHFHSRLEGTSPSELRHPRDEPCCCPHCPRHQQKKDMDQQGHV FT PQAQTVQNVQNP" FT gene 293..1066 FT /gene="CP" FT CDS 293..1066 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:M1KJT6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1KJT6" FT /protein_id="AGF37243.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNRRRTW FT TNRAMYRKPRLYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLSH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1063..1467) FT /gene="C3" FT CDS complement(1063..1467) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /note="REn" FT /db_xref="GOA:M1LCF1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M1LCF1" FT /protein_id="AGF37244.1" FT /translation="MDFRTGELLTATQCESGVYTWTIKNPLYFKIIKHHERPFNTNHDI FT ITIRIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLNNLGVISINN FT VIRACDHVLWDVLENTEYVTNSHIIKFNLY" FT gene complement(1208..1615) FT /gene="C2" FT CDS complement(1208..1615) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional associated protein" FT /note="TrAP" FT /db_xref="GOA:M1LAA4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M1LAA4" FT /protein_id="AGF37246.1" FT /translation="MRNSSPSTGHCTQVPIKVQHRIAKRRPVRTRRVDLTCACSYYFGI FT DCANHGFSHRGITHCNSMREWRIYLDNQKSPIFQDNQAPREAIQHQPRHHNDQNTVQSQ FT PEESVGNTPVFSDLPDLDSLTTSDLAFLKSI" FT gene complement(1521..2603) FT /gene="C1" FT CDS complement(1521..2603) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /note="Rep" FT /db_xref="GOA:M1L5S5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M1L5S5" FT /protein_id="AGF37247.1" FT /translation="MAPPRPFKINAKNYFLTYPQCSLTKEETLSQIQALDTPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKYQCKNNRFFDLISPSRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALNVIKELAPKDYVLQFH FT NLNANLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKEWAIKNAEFITLNRPL FT YSGTNQSAAQNSEEEASSHA" FT gene complement(2156..2446) FT /gene="C4" FT CDS complement(2156..2446) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5A4R9" FT /protein_id="AGF37245.1" FT /translation="MGALISTCLSSSKGNTSARITDSSTLYPLPGQHISIRTFRELNPA FT PTSSPISTRTETPSNGVSFRSMDDLQEEDNRQPMTLTPRHLTAAVSQRLLM" XX SQ Sequence 2753 BP; 755 A; 554 C; 570 G; 874 T; 0 other; accggatggc cgcgattttt tttaaaagtg gtccctacca cgaacaaaaa tccggcactc 60 agaacgctcc ctcaaagttt aattattaag tggtcccctt tttatactta ttctccaagt 120 attattttaa acatgtggga tcctcttttg aacgagtttc ctgaaactgt tcacggtttt 180 aggtgtatgc ttgccgtaaa atatcttcaa ttagttgaac agacatactc tcctgatacg 240 attggtcacg atcttatacg cgatttaatt tcagtaattc gtgctcgcaa ttatgtcgaa 300 gcgtcccgca gatattgtca tttccactcc cgcctcgaag gtacgtcgcc gtctgaactt 360 cgacaccccc gtgatgagcc gtgctgctgc ccccactgtc ctcgtcacca acagaagaag 420 gacatggacc aacagggcca tgtaccgcaa gcccagactg tacagaatgt acagaacccc 480 tgatgtgccc aaaggttgtg aaggcccatg taaggtccaa tcctatgaac agaggcacga 540 catatcgcat gtaggtaaag tattatgtgt tagtgatgtc acccgtggta atgggcttag 600 ccatcgtgtt ggtaagagat tctgtgttaa gtccgtttat gtattgggta aaatatggat 660 ggatgaaaat atcaaaacta agaaccatac gaacactgtg atgttttatc ttgttcgtga 720 cagaaggccc tttggtactg ctatggattt cggtcaggtg tttaacatgt atgataatga 780 gcctagtact gctactatca agaatgatct tcgagaccgt tatcaagttc taaggaaatt 840 cacttcaaca gtcacaggtg gtcaatatgc ttctaaggaa caggcgttgg tcaagaaatt 900 tatgaagatt aataattatg tagtttataa tcatcaagaa gctgctaagt atgacaatca 960 tactgagaat gccttgttat tgtatatggc ttgtactcat gccagtaatc cagtgtatgc 1020 tactttgaag atcagaatct atttctatga ttctgttcag aattaataaa gattgaattt 1080 tattatatga gaatttgtta catattctgt attttccaat acatcccata atacatgatc 1140 acatgctcta attacattgt taatactaat tacacccaaa ttatttaaat atttcataca 1200 ttgaacccta aatactctta agaaacgcca agtctgaggt tgtaagcgag tccagatctg 1260 gaagatcaga aaacactggt gtattcccaa cgctttcctc aggttgtgat tgaactgtat 1320 tctgatcgtt atgatgtcgt ggttggtgtt gaatggcctc tcgtggtgct tgattatctt 1380 gaaatatagg ggatttttga ttgtccaggt atatacgcca ctctcgcatt gagttgcagt 1440 gagtaattcc cctgtgcgaa aatccatgat ttgcacaatc tatgccgaag tagtatgaac 1500 acgcgcacgt tagatcaact ctacgcgtgc gaactggcct cctcttcgct attctgtgct 1560 gcactttgat tggtacctga gtacaatggc ctgttgaggg tgatgaattc cgcattcttt 1620 atagcccact cttttaatgc tgaattcttt tcttcgtcca agtactcttt atatgatgat 1680 gttgggcctg gattgcaaag gaagatagtt gggattccac ctttaatttg aattggtttc 1740 ccgtatttag tgttgctttg ccagtccctt tgggccccca tgaattcttt aaagtgcttt 1800 agatagtggg ggtctacgtc atcaatgacg ttataccaag catcattact gtataccttt 1860 ggactcagat ctagatgacc gcacagataa ttatgtggtc ccagtgatct ggcccacatt 1920 gttttaccag tacgactatc accttctatc acaatactga tgggtctcca tggccgcgca 1980 gcggcaccac tcacattttc agaaacccac tcttcaagtt cttctggaac ttgatcaaat 2040 gaagaagata aaaaaggaca aacaaaaacc tctaaaggag gtgcaaaaat cctatctaaa 2100 ttagcattta aattatgaaa ttgtaaaaca taatctttag gagctaactc cttaattaca 2160 ttaagagcct ctgacttact gccgctgtta agtgcctggg cgtaagcgtc attggctgtc 2220 tgttgtcctc ctcttgcaga tcgtccatcg atctgaaact caccccattc gagggtgtct 2280 ccgtccttgt cgatatagga cttgacgtcg gagctggatt tagctccctg aatgttcgga 2340 tggaaatgtg ctgacctgga aggggatata aggtcgaaga atctgttatt cttgcactgg 2400 tatttccctt cgaactggat aagcacgtgg agatgagggc tcccatcttc gtgcaattct 2460 ctgcagattt ttatgtattt tttattagtt ggtgtatcta gggcttgaat ttgggaaagt 2520 gtttcttctt tagtaagaga gcactgtgga taagtgagga aataattttt ggcatttatt 2580 ttaaatggtc ttggaggagc cattgacttg gtcaatcggt gtctctacta atgctctagc 2640 aatcggtgta ctggagtcct atatatagtt agacaccaaa tggcaattat gtaaaattga 2700 aaagaaattc atactttaat ttgaaatcca aaaccggcca tgcgtataat att 2753 //