ID KC261967; SV 1; linear; genomic RNA; STD; VRL; 2961 BP. XX AC KC261967; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-12 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2961 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2961 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 735a4722152b36bd50d4b90e709831ef. XX CC GenBank Accession Numbers KC261965-KC261967 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-12. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2961 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="lettuce" FT /isolate="TSWV-12" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="May-2010" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:R9RVF5" FT /protein_id="AGM53725.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQPVSVVKSLLKLDLSGIEKKESKI FT PETYASGSK" FT gene complement(2034..2810) FT /gene="N" FT CDS complement(2034..2810) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="AGM53726.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2961 BP; 937 A; 548 C; 477 G; 999 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttctccact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaggctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgtccatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagggtccca aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga 900 cgaaacaaat aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttggac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 gatttctcca caacctgttt cagttgtaaa atctttgtta aagcttgatt taagcgggat 1440 cgaaaagaaa gaatctaaga ttccggaaac atatgcttca ggatcaaaat gatcttgctg 1500 tgtccggttt ttctaattat gttatgttta ttttctttct ttacttataa ttatttctct 1560 gttttgtcat ttcttttaag ttcctcctgt ttaatagaaa ccataaaaca aaaaataaaa 1620 taaaaataaa atcaaaaatg aaacaaaaat caaaaaatga aacaaaaata aaaaataaaa 1680 aatgaaataa aaacaacaaa aaaattaaaa acaaaaaccc aaaaaagatc ccgaaaggga 1740 caatcttggc caaatttggg ttttgttttg tttttgtttt ttgttttttg tttttatttt 1800 tatttttatt ttatttattt attttatttt atttttattt tttattttgt ttttatttta 1860 tgttttttgt tgtttttgtt attttgttta tttattaagc ataacacaca gaaagcaaac 1920 tttaattaaa cacacttatt ttaaatttaa cacactaagc aagcacaagc aataaagata 1980 aagaaagctt tatatatttg tagacttttc cataatttaa cttacagctg attttaagca 2040 agttctgcga gttttgcctg ttttttaacc ccgaacattt catagaactt gttaagagtt 2100 tcactgtaat gttccatagc aatacttcct ttagcattag gattgctgga gctgagtata 2160 gcagcatact ctttcccttt cttcacctga tcttcattca tttcaaatgc tttgcttttc 2220 agcacagtgc aaacttttcc taaggcttct ctggtgtcat acttctttgg gtcaatcccg 2280 aggtctttgt attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta 2340 tcaactgaag caataagagg taagctacct cccagcatta tggcaagcct cacagacttt 2400 gcatcatcaa gaggtaatcc ataggcttga atcaaagggt gggaagcaat cttagatttg 2460 atagtattga gattctcaga attcccagtt tcctctacaa gcctgaccct gatcaagcta 2520 tcaagccttc tgaaggtcat gtcagtggct ccaatcctgt ctgaagtttt ctttatggta 2580 attttaccaa aagtaaaatc actttgttta ataaccttca ttatactctg acgattcttc 2640 aggaatgtca gacatgaaat aacgctcatc ttcttgatct ggtcgaggtt ttccagacaa 2700 aaagtcttga agttgaatgc taccagattc tgatcttcct caaactcaag gtctttgcct 2760 tgtgtcaaca aagcaacaat gctttcctta gtgagcttaa ccttagacat gatgattgta 2820 gaagttgtta tatgctttga ccgtatgtaa ttcaaggtgc gaaagtgcaa ctctgtattc 2880 cgcagtcgtt tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa 2940 taaaattgac acaattgctc t 2961 //