ID KC261955; SV 1; linear; genomic RNA; STD; VRL; 2969 BP. XX AC KC261955; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-6 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2969 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2969 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 54804cde729ffa15783aacb7e253d42d. XX CC GenBank Accession Numbers KC261953-KC261955 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-6. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2969 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="Stellaria media" FT /isolate="TSWV-6" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Dec-2009" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F4ZD08" FT /protein_id="AGM53744.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYDSGSK" FT gene complement(2042..2818) FT /gene="N" FT CDS complement(2042..2818) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:F4ZD09" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:F4ZD09" FT /protein_id="AGM53745.1" FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKHKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2969 BP; 949 A; 550 C; 472 G; 998 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cgcaacactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttacgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcaccagatc ccaattcgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacgcttga atgtctacca tctaacacac aaactatgtc 1320 ttacttagac agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg 1500 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tattttgtaa tttcttttga atttctcctg tttaatagaa accataaaat aaaaataaaa 1620 ataaaaataa aaatcaaaat gaaacaaaaa tcaaaaaatg aacaaaaatc aaacaaaaat 1680 caaaaaatga aataaagaca acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa 1740 agggacaatt ttggccaaac ttgggttttg tttttgtttt ttgtttgttt tttgttttta 1800 ttttattttc atttttattt atttatttta ttttattttt atttttattt tatttttatt 1860 ttcattttat gttttttgtt gtttttgtta ttttgtttat tattaagcac aacacacaga 1920 aagcaaactt taattaaaca cacttgtttt aaatttaaca cactaagcaa gcacaagcaa 1980 taaagataaa gaaagcttta tatatttata ggctttttta taatttaact tacagctgct 2040 tttaagcaag ttctgcaagt tttgcctgtt ttttaacccc gaacatttca tagaacttgt 2100 taagagtttc actgtaatgt tccatagcaa tacttccttt agcattagga ttgctggagc 2160 taagtatagc agcatactct ttccctttct tcacctgatc ttcattcatt tcaaatgctt 2220 tgctttttag cacagtgcaa acttttccta gggcttccct ggtgtcatac ttttttggat 2280 cgatcccgag gtctttgtgt tttgcatcct gatatatagc caagacaaca ctgatcatct 2340 caaagctatc aactgaagca ataagaggta agctacctcc cagcattatg gcaagcctca 2400 cagactttgc atcatcaaga ggtaatccat aggcttggat caaagggtga gaagcaatct 2460 tagatttgat agtattgaga ttctcagaat tcccggtttc ctcgacaagc ctgaccctga 2520 tcaagctatc aagccttctg aaggtcatgt cagtggctcc aatcctgtct gaagttttct 2580 ttatggtaat tttaccaaaa gtaaaatcac tttgcttaat aaccttcatt atactctgac 2640 gattcttcag gaatgtcaga catgaaataa tgctcatctt cttgatctgg tcaaggtttt 2700 ccagacaaaa agtcttgaag ttgaatgcta ccagattctg gtcttcctca aattcaagat 2760 ctttgctttg tgtcaacaaa gcaacaatgt tttccttagt gagcttaacc ttagacatga 2820 tgatcgtaga agttgttata tgctttgacc gtatgtaatt caaggtgcga aagtacaact 2880 ctgtattccg cagtcgtttc ttagggtttt aatgtgatga tttgtaagac tgagtgttaa 2940 ggtttgaata aaattgacac aattgctct 2969 //