ID   KC243097; SV 1; linear; genomic RNA; STD; VRL; 1356 BP.
XX
AC   KC243097;
XX
DT   10-MAR-2013 (Rel. 116, Created)
DT   05-SEP-2014 (Rel. 122, Last updated, Version 3)
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DE   Sweet potato chlorotic stunt virus isolate Anhui-11-2 segment RNA1 RdRp
DE   gene, partial cds; and RNase3 and p7 genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1356
RX   PUBMED; 25170926.
RA   Qin Y., Wang L., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S., Wang Y.,
RA   Yan Z.;
RT   "Complete genomic sequence and comparative analysis of the genome segments
RT   of sweet potato chlorotic stunt virus in china";
RL   PLoS One 9(8):E106323-E106323(2014).
XX
RN   [2]
RP   1-1356
RA   Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S.;
RT   ;
RL   Submitted (29-NOV-2012) to the INSDC.
RL   Henan Academy of Agricultural Sciences, Institute of Plant Protection,
RL   Huayuan Road No. 116, Zhengzhou, Henan 450002, China
XX
DR   MD5; 9ff7b8cd5e83ab972d2e7d09dff7c5b7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1356
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /segment="RNA1"
FT                   /host="Ipomoea batatas"
FT                   /strain="West African"
FT                   /isolate="Anhui-11-2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:81931"
FT   CDS             <1..394
FT                   /codon_start=2
FT                   /product="RdRp"
FT                   /note="ORF1b; expressed by +1 frameshift; involved in viral
FT                   replication"
FT                   /db_xref="GOA:M1T241"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="UniProtKB/TrEMBL:M1T241"
FT                   /protein_id="AGG40827.1"
FT                   /translation="NTNELNINFGFEAKFIENSVPYFCSKFIIDDRGSIKVVPDPVRFF
FT                   EKLSVPVRLSDFLSETTLRERFTSYKDLMSEYDNDSVCLLVDSLISKRYSLPLMTSYAA
FT                   LCFIHCLCANFSSFRKIFDEFFVVDI"
FT   CDS             408..1097
FT                   /codon_start=1
FT                   /product="RNase3"
FT                   /note="ORF2; putative ribonuclease III"
FT                   /db_xref="GOA:M1SVU9"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:M1SVU9"
FT                   /protein_id="AGG40828.1"
FT                   /translation="MMIPIFSDVSEESKLTIFGSRHRLDSIIQSICTSEDRDKYEILGD
FT                   WAITTYVTSMLTDLFKHDADAESLSLLRAHNISNFMFAKAMVESRFYEDFSIWLTPDQL
FT                   QLCRMTFGGGKNVYEVNVKFLANYFERVVGWLVINDSSESIKKFLDLFLKPLMSFRIKK
FT                   PARSILQEWAVKNNKRLDIYTGEYNVNNVVYVLVDGKEISRANDLISKKRAISKAVIFA
FT                   VEALSLN"
FT   CDS             1102..1269
FT                   /codon_start=1
FT                   /product="p7"
FT                   /note="ORF3; putative membrane protein"
FT                   /db_xref="GOA:M1GPT5"
FT                   /db_xref="UniProtKB/TrEMBL:M1GPT5"
FT                   /protein_id="AGG40829.1"
FT                   /translation="MDYSAIINECCKECVLYNPKKCRLDVALLWFGVGFFVLSILLFLL
FT                   FPFLIVRFRR"
XX
SQ   Sequence 1356 BP; 382 A; 197 C; 274 G; 503 T; 0 other;
     caatacgaac gaattgaaca ttaattttgg gtttgaggca aaatttattg aaaattcagt        60
     cccatatttc tgttctaaat tcataatcga tgatcgaggt tcgatcaagg tcgtaccaga       120
     tccggttagg ttctttgaga agttatcagt gccggtgaga ctgtccgatt ttttgtctga       180
     aactacgttg agagagagat tcacctcata taaggatttg atgtctgagt atgacaacga       240
     cagtgtgtgc ttattggtcg attcccttat cagtaagaga tattctcttc cattaatgac       300
     ctcatatgcg gcattgtgtt tcatacattg tttgtgtgca aatttttcgt cgtttcgcaa       360
     gattttcgac gaattctttg ttgttgatat ttaattttta tttggtcatg atgattccga       420
     tcttttctga tgtttctgaa gaaagtaaac ttactatctt cggaagtcgt catagattgg       480
     attctatcat acaatccatt tgtacttcag aagacagaga caaatatgaa attttgggtg       540
     attgggctat cacaacatac gttactagta tgttgactga tctttttaaa catgacgcag       600
     atgccgaatc cctgtcctta cttcgtgctc ataatatttc aaattttatg ttcgcgaaag       660
     ctatggtgga gtcaagattt tatgaagatt tttcaatctg gttgacgccc gaccaattgc       720
     agttatgtag aatgactttc ggtggtggga aaaatgttta tgaagttaat gttaaattct       780
     tggctaacta ctttgagaga gttgttggtt ggttagtcat aaatgatagt tcggaaagta       840
     ttaagaagtt tcttgatttg ttcttgaagc ctcttatgtc tttccgtatt aagaaacctg       900
     ctcgttctat ccttcaagaa tgggctgtaa agaataacaa gagacttgac atttatacgg       960
     gtgagtataa tgtcaacaat gtagtctatg tcctagtcga cggaaaagag atcagtcgag      1020
     ctaatgattt gattagtaag aaaagagcaa tctcaaaggc agtaattttt gctgtcgaag      1080
     ctctaagttt gaattgaatc catggactat tctgccataa ttaatgaatg ttgcaaagaa      1140
     tgtgtgttgt acaatccaaa gaaatgtcgc cttgatgtgg ccctactttg gtttggtgta      1200
     ggattctttg tgttatctat tttattattt ttattatttc cttttcttat tgttagattt      1260
     agaaggtaat tttatttatt agggtatttt tgattaatgt ttgtatccta gagtcatata      1320
     cgtgttttca tagtgtgtat tataaaaact caaaaa                                1356
//