ID KC223600; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC KC223600; XX DT 06-MAR-2013 (Rel. 116, Created) DT 06-MAR-2013 (Rel. 116, Last updated, Version 1) XX DE Corchorus yellow vein mosaic virus isolate CEA8, complete genome. XX KW . XX OS Corchorus yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2743 RA Archana K., Malathi V.G.; RT "Molecular characterization of begomovirus associated with yellow vein RT mosaic disease of Corchorus"; RL Unpublished. XX RN [2] RP 1-2743 RA Archana K., Malathi V.G.; RT ; RL Submitted (28-NOV-2012) to the INSDC. RL Plant Pathology, I.A.R.I, No. 1, New Delhi, Delhi 110012, India XX DR MD5; becda965f77165d57bbed1c72076b4bf. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Corchorus yellow vein mosaic virus" FT /host="Corchorus olitorius" FT /isolate="CEA8" FT /mol_type="genomic DNA" FT /country="India:Maharashtra" FT /collected_by="V.G. Malathi" FT /collection_date="27-Nov-2012" FT /identified_by="Kumari Archana" FT /db_xref="taxon:1297645" FT gene 120..479 FT /gene="AV2" FT CDS 120..479 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:M1SWM7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M1SWM7" FT /protein_id="AGG37862.1" FT /translation="MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDL FT ISVVRARKYAEATTRYEHFNARMESTPSVELRQPVQCPCRCPYCPRHLKVSGVGQQAHE FT QEAEDIQNVQKSGCS" FT gene 280..1053 FT /gene="AVI" FT CDS 280..1053 FT /codon_start=1 FT /gene="AVI" FT /product="coat protein" FT /db_xref="GOA:M1RL93" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:M1RL93" FT /protein_id="AGG37861.1" FT /translation="MPKRPLDMSISTPGWKVRRRLNFDSPYSARAAVPIVPVISKSRAW FT ANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNE FT PSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYEN FT HSENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(583..987) FT /gene="AC5" FT CDS complement(583..987) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="GOA:M1RFC1" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:M1RFC1" FT /protein_id="AGG37867.1" FT /translation="MSTCHIQHQSILTMILVLASLLLVIDNIIINPNKLLHESLFLGRI FT LTTSNRSMPLPKDLITIPMHILDSRGARLVVEHVEHLPKILRLINGTTITNEEEHNTVS FT VILGLDVFVHPYLSQNINRLNTETLPYPMS" FT gene complement(1050..1454) FT /gene="AC3" FT CDS complement(1050..1454) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancement protein ReP" FT /db_xref="GOA:M1T4J5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M1T4J5" FT /protein_id="AGG37865.1" FT /translation="MDLRTGEYITAAQAENGAFTWTVPNPLYFRMTDHHSRPFLSNQDI FT ITARIQFNYNLRKALGIHQCFLTFRIWTNSHLQIGRFLRVFRTQVLKFIDNLGVISINN FT VIRAVDHVLWNVLTQTVYVQSSNVIKFNLY" FT gene complement(1195..1599) FT /gene="AC2" FT CDS complement(1195..1599) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activation protein TrAp" FT /db_xref="GOA:M1RSN9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M1RSN9" FT /protein_id="AGG37864.1" FT /translation="MQPSSPSEGHCSQVPIKVQHRIAKKKFRRRRVDLNCGCSYFLNIN FT CHNHGFTHRGVHHCSSSREWRLYLDGSKSPVFQDDRPSQQAFPVEPRHHNGKNTVQLQP FT EESTGDSPMFPNLPHLDELTPSDWSFLKSI" FT gene complement(1496..2053) FT /gene="AC1" FT CDS complement(1496..2053) FT /codon_start=1 FT /gene="AC1" FT /product="REP" FT /db_xref="GOA:M1SQG2" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M1SQG2" FT /protein_id="AGG37863.1" FT /translation="MEVYISPFSPSSFDRVPDELEEWACDNVVHAAARPLRPVSIVIEG FT DSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPQYLKHEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDQEKNAALKNWAIRNATFVTLRRPLF FT SGTHQGSAQDSQEEIQTEESGP" FT gene complement(2122..2424) FT /gene="AC4" FT CDS complement(2122..2424) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M1TCQ8" FT /protein_id="AGG37866.1" FT /translation="MGNLIYTCSSSSRANTSARISDSSTWYPQPGQHISIRTFRELNPA FT PTSSPISTRTETHLSGESSKSTADLQEEASRLQTTLMQRHLTQAVSQRLLASLEN" XX SQ Sequence 2743 BP; 675 A; 589 C; 657 G; 822 T; 0 other; accggatggc cgcgcgattt tttttaaagt gggccctcga ccaatcatat cgctcgctca 60 aagttaaata acgctcccgc gcactataag tacttgctca gcaagttttt ctttgcacca 120 tgtgggatcc acttttgaac cagttcccgg agactgtctt tgggttgaga tgtatgcttg 180 cggttaagta tttgcagtta gtcgagcgta cgtattcacc cgatacagta ggttacgagc 240 ttattcgtga tctgatctct gtagtccgtg ctcggaagta tgccgaagcg accactcgat 300 atgagcattt caacgcccgg atggaaagta cgccgtcggt tgaacttcga cagcccgtac 360 agtgcccgtg ccgctgtccc tattgtcccc gtcatctcaa agtctcgggc gtgggccaac 420 aggcccatga acaggaagcc gaggatatac agaatgtaca gaagtccgga tgttcctaag 480 ggatgtgagg gtccgtgtaa ggtccagtct tttgagtcta ggcatgatgt agttcacatt 540 ggtaaggtta tgtgtattag tgatgtaact aggggtacgg gtctaactca tagggtaggg 600 aagcgtttct gtgttaagtc tgtttatgtt ctgggaaaga tatggatgga cgaaaacatc 660 aagaccaaga atcacactaa cagtgttatg ttcttcctcg ttcgtgatcg tcgtcccgtt 720 gataagccgc aagattttgg ggaggtgttc aacatgttcg acaacgagcc gagcaccgcg 780 actgtcaaga atatgcatag ggatcgttat caggtccttc ggaagtggca tgctacggtt 840 actggtggtc agtatgcgtc caaggaacag gctctcgtga agaagtttgt tagggttaat 900 aattatgttg tctataacca gcaagaggct ggcaagtacg agaatcatag tgagaatgct 960 ttgatgttgt atatggcatg tactcatgcc tccaatcccg tgtatgctac tctgaagata 1020 cggatctatt tctacgattc ggtcacaaat taataaagat tgaattttat tacgtttgaa 1080 ctttgtacat aaactgtttg cgttaataca ttccataata catgatctac agccctaatt 1140 acattgttga tactaattac acccaaatta tcaataaatt tcaacacttg ggtcctaaat 1200 actcttaaga aacgaccaat ctgaaggtgt gagttcgtcc agatgcggaa ggttaggaaa 1260 cattggtgaa tccccagtgc tttcctcagg ttgtagttga actgtattct tgccgttatg 1320 atgtcttggt tcgacaggaa aggcctgctg tgatggtctg tcatcctgaa atacagggga 1380 tttggaaccg tccaggtaaa ggcgccattc tctgcttgag ctgcagtgat gtactccccg 1440 gtgcgtaaat ccatggttgt ggcagtttat gttgaggaag tatgaacagc cgcagttaag 1500 gtccactctc ctccgtctga atttcttctt ggctatcctg tgctgaacct tgatgggtac 1560 ctgagaacag tggccttctg agggtgacga aggttgcatt tcttatagcc cagttcttca 1620 gtgccgcgtt cttttcttgg tccaagtatt ctttatagct tgaatttgga cctggattgc 1680 agaggaagat tgttgggata ccgcctttaa tttgaactgg ctttccgtac tttgtatttg 1740 attgccagtc tctttgggcc cccatgaatt cgtgctttag atattgcgga tcgacgtcat 1800 cgatgacgtt gtaccacgct tcattactgt acacttttgg acttaagtcc aaatggccac 1860 aaagataatt atgtggaccc aaagacctgg cccacattgt cttccccgta cgactatcac 1920 cctcgatcac tatactcacc ggtctcaagg gccgcgcagc ggcatgaacg acgttatcgc 1980 acgcccactc ttcgagttca tctggaactc ggtcgaaaga agaaggagaa aaaggcgaaa 2040 tatagacctc catcggaggc gtaaaaatcc tatctaaatt ggcatttaaa ttatgaaatt 2100 gtaatacata gtctttgggt gctagttctc taatgacgct aagagcctct gacttactgc 2160 ctgcgttaag tgccgctgca taagcgtcgt ttgcagtctg ctggcctcct cttgcagatc 2220 tgccgtcgat ttggaactct ccccactcaa gtgtgtctcc gtccttgtcg atataggact 2280 tgacgtcgga gctggattta gctccctgaa tgttcggatg gaaatgtgct gacctggttg 2340 gggataccag gtcgaagaat cactgattct tgcactggta tttgccctcg aactggatga 2400 gcacgtgtaa atgaggttcc ccattttcgt gtagctctct gcagatcttg atgaattttt 2460 tattagttgg tgtctgtagg ttttgtaatt gggaaagtgc ctcttctttt gtgagagagc 2520 acttgggata agttagaaaa taattctttg cgtttatttt aaataggctc tttggaggca 2580 tggtcaatgg acaccgattg actcttccaa accatttact cctgcaatcg gtgtctggtg 2640 tcttatttat acctggacac caaatggcat aagcgtaatt taaaaagata gtttcgaatt 2700 tcaaaaccct cacgctccaa aaagcggcca tccgtataat att 2743 //