ID   KC136309; SV 1; linear; genomic RNA; STD; VRL; 1370 BP.
XX
AC   KC136309;
XX
DT   03-FEB-2013 (Rel. 115, Created)
DT   03-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate W-21 helper component proteinase gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1370
RA   Basavaraj Y.B., Jain R.K.;
RT   "Studies on genetic diversity of PRSV-P and -W populations from different
RT   hosts and locations of India";
RL   Unpublished.
XX
RN   [2]
RP   1-1370
RA   Basavaraj Y.B., Jain R.K.;
RT   ;
RL   Submitted (05-NOV-2012) to the INSDC.
RL   Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
XX
DR   MD5; 52f4856127b3298d74ebe517d3eb4ba6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1370
FT                   /organism="Papaya ringspot virus"
FT                   /host="pumpkin"
FT                   /isolate="W-21"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Gadag, Karnataka"
FT                   /isolation_source="leaf showing blistering and vein banding
FT                   symptoms"
FT                   /collected_by="Y. B. Basavaraj"
FT                   /collection_date="25-Jan-2011"
FT                   /note="pathotype W"
FT                   /db_xref="taxon:12205"
FT   CDS             <1..>1370
FT                   /codon_start=1
FT                   /product="helper component proteinase"
FT                   /note="HC-Pro"
FT                   /db_xref="GOA:L7XD60"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:L7XD60"
FT                   /protein_id="AGD79972.1"
FT                   /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT                   LFPCHKITCNTCMSKVKGRVIDEVGEELNCELERLRETLSSYGGSFGHVSTLLDQLNKV
FT                   LNARNMNDEAFKEIAKKIDAKKESPWTHMTAINNTLIKGSLATGYEFERASDNLREIVR
FT                   WHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDRNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEYYSQRQNPNGVRKIAIGNLIFSTNLERFRQQMVEHHIDQGPITRECIA
FT                   LRNNNYVHVCSCVTLDDGTPAISELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKK
FT                   GYCYMNIFLAMLINIPENEAKDFTKGVRDLVGSKLGEWPTMLDVATCANQLIIFHPDAA
FT                   NAELPRILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
XX
SQ   Sequence 1370 BP; 437 A; 254 C; 312 G; 367 T; 0 other;
     aatgacgtgg ctgaaaaatt ctggctcggt ttcaataggg cttttctgcg gcacagaaaa        60
     ccaacggacc acacttgcac gtctgacatg gacgttacaa tgtgtgggga agttgcagct       120
     ctcgcaacaa taatcctgtt tccgtgtcat aagataactt gcaatacttg catgagcaaa       180
     gtaaagggaa gagttattga cgaagtcggt gaggaattga attgtgaact tgaacgcttg       240
     cgtgaaactc tttcgtcata tggaggatca ttcgggcatg tctcaacatt gcttgatcaa       300
     ctgaacaaag ttttgaatgc gcggaacatg aatgatgaag cttttaaaga aattgctaag       360
     aaaattgatg caaagaaaga gagtccttgg actcacatga cagctattaa caacacgctc       420
     atcaaaggtt cgctagcaac tggctatgaa tttgaaagag cgtctgataa tcttcgagag       480
     attgtgagat ggcatctcaa aaggacagag tcaataaaag ctggcagtgt tgaaagtttc       540
     agaaataagc gttctggaaa ggcccacttc aacccagctc ttacatgtga taatcaattg       600
     gataggaatg gcaatttctt atggggtgag aggcaatacc acgccaaaag attctttgcc       660
     aactattttg aaaagattga tcacagtaag ggttatgagt actacagtca gcgccaaaat       720
     ccaaatggtg tcaggaaaat agccattggc aatttgatat tttcaacaaa tttggaaagg       780
     tttcggcagc aaatggttga acatcacatt gatcaaggac caattactcg cgaatgcatt       840
     gcattacgca ataacaatta tgttcatgta tgtagctgcg tgactttaga tgatggaacc       900
     ccagcaataa gtgagttgaa gactcctacc aagaaccaca tagttcttgg taactctggt       960
     gatcctaagt acgttgactt gccgactctt gagtctgatt caatgtacat agccaagaaa      1020
     ggttactgct acatgaacat ctttttagcg atgctcataa acatacctga gaatgaggca      1080
     aaggacttta caaagggggt tcgtgacctt gtgggttcaa aacttggaga atggccaacg      1140
     atgttagatg tcgcaacatg cgcaaaccag ttgataattt ttcatcctga tgcagccaat      1200
     gcagaattgc cgcgaatttt agtggatcac cgacagaaaa caatgcatgt cattgactct      1260
     tttgggtctg tggattctgg atatcatata ttaaaggcaa acacagttaa tcagctgatc      1320
     caatttgcta gggaaccact tgatagtgaa atgaagcact acattgtcgg                 1370
//