ID KC106651; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC KC106651; XX DT 27-JUN-2013 (Rel. 117, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:C5], complete DE genome. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2779 RX DOI; 10.1007/s00705-013-1851-z. RX PUBMED; 24068582. RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.; RT "Phylogenetic relationships, recombination analysis, and genetic RT variability among diverse variants of tomato yellow leaf curl virus in Iran RT and the Arabian Peninsula: further support for a TYLCV center of RT diversity"; RL Arch. Virol. 159(3):485-497(2014). XX RN [2] RP 1-2779 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX DR MD5; a68c0cd11783c489dc4ba1a833b2cb15. XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2779 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="tomato" FT /isolate="TYLCV-IL[IR:Boj:C5]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /db_xref="taxon:66366" FT gene 146..496 FT /gene="V2" FT CDS 146..496 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /db_xref="GOA:R9WS22" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9WS22" FT /protein_id="AGO02138.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEQTYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNIQNVSEP" FT gene 306..1082 FT /gene="V1" FT CDS 306..1082 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:R9WPE8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R9WPE8" FT /protein_id="AGO02139.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1079..1483) FT /gene="C3" FT CDS complement(1079..1483) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9WQK5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9WQK5" FT /protein_id="AGO02141.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1224..1631) FT /gene="C2" FT CDS complement(1224..1631) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:R9WP93" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9WP93" FT /protein_id="AGO02142.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1540..2613) FT /gene="C1" FT CDS complement(1540..2613) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:R9WPI0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9WPI0" FT /protein_id="AGO02140.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGEFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA FT SINQGQTQDIQEENNKA" FT gene complement(2169..2477) FT /gene="C4" FT CDS complement(2169..2477) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9WS26" FT /protein_id="AGO02143.1" FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTESSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2779 BP; 772 A; 529 C; 607 G; 871 T; 0 other; accggatggc cgcgcttttt ttttatgtgg tccccacgag tgttccgcag acgtcactgt 60 caaccaatca aattgcatcc tcaaacgtta gataagtgtt catttgtcta tatatacttg 120 gtccccaagt attttgtatt gcaatatgtg ggacccactt ctaaatgaat ttcctgaatc 180 tgttcacgga tttcgttgta tgttagctat taaatatttg cagtccgttg agcaaactta 240 cgagcccaat acattgggcc acgatttagt tagggatctt atatctgttg taagggcccg 300 tgactatgtc gaagcgacca ggcgatataa tcatttccac gcccgtctcg aaggttcgcc 360 gaaggctgaa cttcgacagc ccatacagca gccgtgctgc tgtccccatt gtccaaggca 420 caaacaagcg acgatcatgg acgtacaggc ccatgtatcg aaagcccaga atatacagaa 480 tgtatcggag ccctgatgtt cctcgtggat gtgaaggccc atgtaaagtc cagtcttatg 540 agcaacggga tgatattaag catactggta ttgttcgttg tgttagtgat gttactcgtg 600 gatctggaat tactcacaga gtgggtaaga ggttctgtgt taaatcgata tattttttag 660 gtaaagtctg gatggatgaa aatatcaaga agcagaatca cactaatcag gtcatgttct 720 ttttagtccg tgatagaagg ccctatggaa acagcccaat ggattttgga caggttttta 780 atatgttcga taatgagccc agtaccgcaa ccgtgaagaa tgatttgcgg gataggtttc 840 aagtgatgag gaaatttcat gctacagtta ttggtgggcc ctctggaatg aaggaacagg 900 cattagttaa gagatttttt aaaattaaca gtcatgtaac ttataatcat caggaggcag 960 ccaagtacga gaaccatact gaaaatgcct tgttattgta tatggcatgt acgcatgcct 1020 ctaatccagt gtatgcaact atgaaaatac gcatctattt ctatgattca atatcaaatt 1080 aataaaattt atattttata tcatgagttt ctgttacatt tattgtgttt tcaagtacat 1140 catacaatac atgatcaact gctctgatta cattgttaat ggaaattaca ccaagactat 1200 ctaaatactt aagaacttca tagctaaata ctcttaagaa acgaccagtc tgaggctgta 1260 atgtcgtcca aattcggaag ttgagaaaac atttgtgaat ccccattacc ttcctgatgt 1320 tgtggttgaa tcttatctga atggaaatga tgtcgtggtt cattagaaat ggcctctggc 1380 tgtgttctgt tatcttgaaa taaaggggat tgtttatctc ccagataaaa acgccattct 1440 ctgcttgagg agcagtgatg agttcccctg tgcgtgaatc catgattatt gcagttgagg 1500 tggaggtagt atgagcagcc acagtctagg tctacacgct tacgccttat tgttttcttc 1560 ttggatatct tgtgtttgac cttgattgat acttgcgaac agtggctcgt agagggtgac 1620 gaaggttgca ttcttgagag cccaagtttt caaggatatg tttttttctt cgtctagata 1680 ttccctatat gaggaggtag gtcctggatt gcagaggaag atagtgggaa ttcccccttt 1740 aatttgaatg ggctttccgt actttgtgtt gctttgccag tccctctggg cccccatgaa 1800 ttccttgaag tgctttaaat agtgcgggtc tacgtcatca atgacgttgt accacgcatc 1860 attactgtac acctttggac ttaggtctag atgtccacat aaataattat gtgggcctag 1920 agacctggcc cacattgttt tgcctgttct gctatcaccc tcgatgataa tactattagg 1980 tctccatggc cgcgcagcgg aagacatgac gttctctgac acccatactt caagttcatc 2040 tggaacttga ttaaaagatg aagataaaaa gggagaaata taaggagccg gaggctcttg 2100 aaaaatccta tctaaatttg aacttaaatt atgaaattgt aaaatataat cctttggggc 2160 cttctctttc aatatattga gggcctcgga ttttctgcct gaattgagtg cttcggcata 2220 tgcgtcgttg gcagattgct gacctcctct agctgatctg ccatcgattt ggaaaattcc 2280 aaaatcaatg aactctccgt ctttctccac gtaggtcttg acatctgttg agctcttagc 2340 tgcctgaatg ttcggatgga aatgtgctga cctgcttgga gaggataaat cgaagaatcg 2400 ttggttctta cactggtact ttccttcgaa ctggatgaga acatggagat gaggagaccc 2460 atcttcatgt agttcatgcg caactcgtat gaatttcttg ttagttggtg tatttagggc 2520 aagtaattgg gaaagtgctt cttctttaga gagagaacaa ttaggataag tcaggaaata 2580 atttttggca tatattttaa atagacgagg catggtgaaa tgaatcggtg tccctcaaaa 2640 ctctatggca atcggtgtat ccggtgtctt acttatacct agacacccaa tggctatttg 2700 gtaatttcgt aaaagtaaat gtaattcaaa attcaaaatt caaaaatcaa atcattaaag 2760 cggccatccg tataatatt 2779 //