ID   K02703; SV 1; linear; genomic RNA; STD; VRL; 2037 BP.
XX
AC   K02703;
XX
DT   02-JUL-1986 (Rel. 09, Created)
DT   03-AUG-2006 (Rel. 88, Last updated, Version 2)
XX
DE   Alfalfa mosaic virus strain 425 Madison complete sequence.
XX
KW   coat protein; complete genome.
XX
OS   Alfalfa mosaic virus
OC   Viruses; Riboviria; Bromoviridae; Alfamovirus.
XX
RN   [1]
RP   1-2037
RX   DOI; 10.1093/nar/11.9.2881.
RX   PUBMED; 6856479.
RA   Barker R.F., Jarvis N.P., Thompson D.V., Loesch-Fries L.S., Hall T.C.;
RT   "Complete nucleotide sequence of alfalfa mosaic virus RNA3";
RL   Nucleic Acids Res. 11(9):2881-2891(1983).
XX
DR   MD5; 8eacf1af36060929286bb73da90bbcb8.
DR   EuropePMC; PMC1370517; 14681584.
DR   EuropePMC; PMC4174816; 25288969.
DR   EuropePMC; PMC4770915; 26871866.
DR   RFAM; RF00252; Alfamo_CPB.
XX
CC   Three repeats are located at positions 56-82, 121-147 and 210-236.
CC   The latter two of these are involved with ribosome binding and all
CC   three could form stem-loop structures.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2037
FT                   /organism="Alfalfa mosaic virus"
FT                   /strain="425 Madison"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12321"
FT   CDS             241..1143
FT                   /codon_start=1
FT                   /product="32.4 kd protein"
FT                   /db_xref="GOA:P05672"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/Swiss-Prot:P05672"
FT                   /protein_id="AAA46291.1"
FT                   /translation="MENTKTNASSSGMSSSSSFSVSYAEEMLLADEVSKINSMSILGPN
FT                   QLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNILKS
FT                   SSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVA
FT                   STNANSAVGVLYPIWEDELSRKQILERGADFLKFPIAETEPVRDLLNAGKLTDFVLDRT
FT                   RLGVGSKNDPSPVLLEPRAKITGKAKTVFIPEGPSVPNTTINGMAPTVRIDAGSPKGLG
FT                   VPKGFTYESFIKDEILPDH"
FT   CDS             1193..1858
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:P05673"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/Swiss-Prot:P05673"
FT                   /protein_id="AAA46292.1"
FT                   /translation="MSSSQKKAGGKAGKPTKRSQNYAALRKAQLPKPPALKVPVVKPTN
FT                   TILPQTGCVWQSLGTPLSLSSFNGLGVRFLYSFLKDFAGPRILEEDLIYRMVFSITPSY
FT                   AGTFCLTDDVTTEDGRAVAHGNPMQEFPHGAFHANEKFGFELVFTAPTHAGMQNQNFKH
FT                   SYAVALCLDFDAQPEGSKNPSYRFNEVWVERKAFPRAGPLRSLITVGLLDEADDLDRH"
XX
SQ   Sequence 2037 BP; 540 A; 441 C; 463 G; 593 T; 0 other;
     gttttaaaac cattttcaaa atattccaat tcaactcaat taacgctttt acagtgtaat        60
     tcgtactttt cgtaagtaag tttctgtaaa agcgtttctt gttttaattt ggtctaacac       120
     gtaattcgta ctcttcgtga gtaagttgtg ttagccatac ctatccttta aatttctgtc       180
     aatttaaaaa gaaaatcatt cccatttgcg taattcgtac tcttcgtgag taagttgtaa       240
     atggagaata caaaaacaaa tgcctcgagt tctggaatgt cttcttcctc cagcttttca       300
     gtgtcttatg ctgaggaaat gttactagct gatgaagttt caaaaattaa ctcaatgtcg       360
     attctgggtc ctaatcagct aaagctctgc actcaattgg tgctgtctaa tggagcagcg       420
     ccagtagttt taagccttgt gtcaaaggaa aagaaatcga ttttaaatcg tatgcttcct       480
     aagattggac agaggatgta cgtccatcac tcggctattt acctccttta tatgccaaac       540
     atactgaaaa gttcttcagg gagcatcacc ttgaaacttt ttaatgaagc tacaggagag       600
     ttagtggatg ttgacaccga ccatgatgct acccaggcat gtatatttgc tggacgttac       660
     ccccggagta ttctggcgaa agatgcagcg aaaggacacg acttgaaatt agtcgtccac       720
     gctgttgctt cgaccaatgc gaactccgct gtcggtgttc tataccccat ttgggaagat       780
     gagttgagca gaaagcagat cctcgaaagg ggtgccgatt tcctaaagtt tccaattgct       840
     gagaccgagc cagtccgcga tctcttaaat gctgggaagt tgacggactt tgttcttgat       900
     aggacaaggt tgggtgtggg gtcaaagaat gatcccagtc cggttctttt agaaccaaga       960
     gctaagatta ccgggaaggc aaagacagtt tttattcccg aaggtcctag tgttcctaat      1020
     accactataa atggtatggc accaacggtg cgtatagatg ccggttctcc aaagggtctt      1080
     ggagttccga aagggtttac atatgaaagt tttattaaag atgaaatatt acccgatcat      1140
     tgatcggtaa tgggccgttt ttatttttaa ttttctttca attacttcca tcatgagttc      1200
     ttcacaaaag aaagctggtg ggaaagctgg taaacctact aaacgttctc agaactatgc      1260
     tgccttacgc aaagctcaac tgccgaagcc tccggcgttg aaagtcccgg ttgtaaaacc      1320
     gacgaatact atactgccac agacgggctg cgtgtggcaa agcctcggga cccctctgag      1380
     tctgagctct tttaatgggc tcggcgtgag attcctctac agttttctga aggatttcgc      1440
     gggacctcgg atcctcgaag aggatctgat ttacaggatg gtgttttcca taacaccgtc      1500
     ctatgccggc accttttgtc tcactgatga cgtgacgact gaggatggta gggccgttgc      1560
     gcatggtaat cccatgcaag aatttcctca tggcgcgttt cacgctaatg agaagttcgg      1620
     gtttgagttg gtcttcacag ctcctaccca tgcgggaatg caaaaccaaa atttcaagca      1680
     ttcctatgcc gtagccctct gtctggactt cgacgcgcag cctgagggat ctaaaaatcc      1740
     ctcataccga ttcaacgaag tttgggtcga gagaaaggcg ttcccgcgag cagggcccct      1800
     ccgcagtttg attactgtgg ggctgctcga cgaagctgac gatcttgatc gtcattgatg      1860
     taccccatta atttgggatg ccaaagtcat ttgatgctga cctccactgg gtggattaag      1920
     gtcaaggtat gaagtcctat tcgctcctga taggatcgac ttcatattgc ttatatatgt      1980
     gctaacgcac atatataaat gctcatgcaa aactgcatga atgcccctaa gggatgc         2037
//