ID JX971980; SV 1; linear; genomic RNA; STD; VRL; 2431 BP. XX AC JX971980; XX DT 22-APR-2013 (Rel. 116, Created) DT 01-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE Hop trefoil cryptic virus 2 isolate IPP_GelbSK segment RNA 1, complete DE sequence. XX KW . XX OS Hop trefoil cryptic virus 2 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2431 RX DOI; 10.1007/s00705-013-1691-x. RX PUBMED; 23584419. RA Lesker T., Rabenstein F., Maiss E.; RT "Molecular characterization of five betacryptoviruses infecting four clover RT species and dill"; RL Arch. Virol. 158(9):1943-1952(2013). XX RN [2] RP 1-2431 RA Lesker T., Maiss E.; RT ; RL Submitted (15-OCT-2012) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Gottfried Wilhelm Leibniz RL University Hannover, Herrenhaeuser Str. 2, Hannover 30149, Germany XX DR MD5; 6de25234b9c0990f617162eca8d99b81. XX CC GenBank Accession Numbers JX971980-JX971981 represent the complete CC genome of Hop trefoil cryptic virus 2 isolate IPP_GelbSK. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2431 FT /organism="Hop trefoil cryptic virus 2" FT /segment="RNA 1" FT /host="Medicago lupulina" FT /isolate="IPP_GelbSK" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2011" FT /db_xref="taxon:1323523" FT CDS 110..2350 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="87.2 kDa" FT /db_xref="GOA:M9VXY5" FT /db_xref="UniProtKB/TrEMBL:M9VXY5" FT /protein_id="AGJ83767.1" FT /translation="MPFNSVRNYLEERSVRVKKEMMTYQSSNRDPDAILEQSQDPDYRR FT YYDNARYNPSNDLKYRMLSKEYSTLVEAYRLRNDDKHQPYELHQPVPQDAAPVPSYRAP FT APGIKPVPLMYHYGHVIHDPVSLTESAIDDDSDTLPDSDEPTVTHFGYPINKRIYDLIC FT NRYPEYLSVISAYCRPIGTVDATFKDFNKEQIPSGPIDPNRKEEVLTHIFRFLDAQPYL FT PLHFVDTQFCKTPLVTGTGYHNRYSFKQKAHAKYSHPEEYAQMPTSKGYFYNATYENAR FT TLVHYIKEYGLPFNIHYTPEDVDFTEEQIQAYIDSANNFFNDYPTLLFTRNHISKRDGT FT LKVRPVYAVDDLFIIIELMLTFPLTVQARKQSCCIMYGLETIRGSNHYIERLARSYSTY FT FSLDWSSYDQRLPRVITDIYYTDFLRRLIVINDGYQPTYEYPTYPDLDEHKMYTRMDNL FT LTFLHTWYNNMTFVLADGYAYRRTYCGVPSGLYNTQYLDSFGNLFLIIDAMIEFGFRTP FT EIDDFILLVLGDDNTGMTVISIDRIYDFITFLEIYALTRYNMVLSTTKSVLTTLRSKIE FT TLGYQCNHGSPKRDISKLIAQLCYPENGLKPHTMASRAIGIAYASAGQDYMFHSFCQDV FT YNMFRLDYKPDARTTLNFQRQIYHNLDDGIPDLATPVVPPFPSIFEVREMYSRYQGPLT FT YAPKWNFAHFINSPDVTPAHYKTMRMYEIENNITIRPAPTFETVVPTTRNFP" XX SQ Sequence 2431 BP; 702 A; 613 C; 379 G; 737 T; 0 other; agatttttta taagcggccc ccgcctataa tatttagaat tcacattcgt ctaatttttc 60 cccttcacaa ataactgcta acccctttta ttttaactaa cgtctcacaa tgccgttcaa 120 ctcagttcgt aattatctcg aagaacgctc cgttcgtgtt aagaaagaaa tgatgacata 180 tcagtcatca aaccgtgacc ccgatgcaat tcttgagcaa tctcaagacc cggactatcg 240 tcgttattat gacaatgccc gatataatcc ttcaaatgat ttgaagtatc gtatgctatc 300 aaaggaatac tctactctag ttgaagctta ccgtctcaga aatgatgaca aacaccaacc 360 gtatgaactt catcagccag tcccacaaga tgctgctccc gttccttcct accgtgcccc 420 tgctcctgga ataaaacccg ttcccctcat gtaccactat ggacatgtta ttcacgatcc 480 tgtctctctc accgaatcag caattgatga tgattccgat acccttcctg actccgatga 540 gcccactgtt actcactttg gatacccaat caataagcgt atttacgatt taatttgtaa 600 tcgctatcct gaatacctaa gtgtaattag tgcttattgt cgtcctattg gaacagttga 660 tgctacattt aaggatttta ataaggaaca gatcccatct ggacctattg atcccaatcg 720 taaagaagaa gtgctaaccc acatctttcg attcttagat gctcagcctt acctgcccct 780 tcatttcgtt gatacccagt tttgcaaaac accacttgta actggaacag gctaccacaa 840 ccgctattct ttcaaacaga aagcgcacgc taagtactct catcctgagg aatacgctca 900 aatgccaacc tcaaaaggct atttctacaa tgccacttat gagaatgctc gcactcttgt 960 tcattatatt aaggagtatg gattaccttt taatatccat tacactcctg aagatgttga 1020 cttcacagaa gaacagattc aagcctatat tgactctgcc aacaacttct ttaatgacta 1080 cccgacgtta ttgttcaccc gcaaccacat ctctaaacga gatggaactc ttaaagttcg 1140 tcccgtttat gctgttgatg acttgtttat tataatcgag ttgatgttga ctttccccct 1200 caccgtccaa gctcgaaaac agtcttgttg cattatgtat ggacttgaaa ccattcgtgg 1260 ttccaaccat tacattgaac gcctagctcg ttcgtattcg acctacttct cccttgactg 1320 gtccagttat gaccaacgac tccctcgcgt cattactgat atttattaca ctgacttcct 1380 ccgaagactc atagtaatta acgatggata ccaaccgacc tatgaatacc caacctaccc 1440 tgaccttgat gaacacaaaa tgtacacaag aatggataat ttacttacct ttctccatac 1500 ctggtacaac aacatgacct tcgttttagc tgatggttat gcctaccgca gaacttattg 1560 cggcgtaccc tctggtctgt acaacactca atacctcgat tcttttggta atctatttct 1620 aattatagat gctatgatcg aattcggttt cagaacccct gagatcgatg atttcattct 1680 ccttgtcctt ggagatgata atactggtat gacggtcatt tcaattgacc gaatctatga 1740 cttcatcacc tttcttgaaa tttacgcgct aacccgatat aatatggtcc tttcaacgac 1800 caaatccgtg ttaacaacgt tacgctctaa aattgagact ctcggttacc aatgtaacca 1860 cggttctcct aagcgtgata tttccaagct cattgcccag ctctgttacc cagagaatgg 1920 actaaagcca catactatgg cttcaagagc aattggaatt gcgtatgcct ctgctggcca 1980 agactacatg tttcactctt tttgtcaaga tgtgtataat atgtttaggt tagactataa 2040 acctgatgct cgcaccactc tgaattttca acgtcaaatt tatcataatt tagatgatgg 2100 aataccagat cttgcaacac cagtcgtgcc accattccct tcgatttttg aagttcgtga 2160 aatgtactcc cgttaccaag gtccactgac ctatgctcct aaatggaatt tcgctcactt 2220 tatcaattcc ccggacgtga cacccgccca ctacaaaact atgcgcatgt atgaaattga 2280 aaataacatt acaattcgac ctgcccctac ttttgaaacg gtcgtgccca ccacaagaaa 2340 tttcccgtga tttttttgtg cttaatagca tgaaaatatt tctcgctaat ttaaaaaaaa 2400 aaaaaaaaca aaaaaatcaa aataaatccc t 2431 //