ID JX971979; SV 1; linear; genomic RNA; STD; VRL; 2353 BP. XX AC JX971979; XX DT 22-APR-2013 (Rel. 116, Created) DT 01-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE Red clover cryptic virus 2 isolate IPP_Nemaro segment RNA 2, complete DE sequence. XX KW . XX OS Red clover cryptic virus 2 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2353 RX DOI; 10.1007/s00705-013-1691-x. RX PUBMED; 23584419. RA Lesker T., Rabenstein F., Maiss E.; RT "Molecular characterization of five betacryptoviruses infecting four clover RT species and dill"; RL Arch. Virol. 158(9):1943-1952(2013). XX RN [2] RP 1-2353 RA Lesker T., Maiss E.; RT ; RL Submitted (15-OCT-2012) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Gottfried Wilhelm Leibniz RL University Hannover, Herrenhaeuser Str. 2, Hannover 30149, Germany XX DR MD5; f8b7f07b17b7ebd7fb71b6a79dcc8bb4. XX CC GenBank Accession Numbers JX971978-JX971979 represent the complete CC genome of Red clover cryptic virus 2 isolate IPP_Nemaro. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2353 FT /organism="Red clover cryptic virus 2" FT /segment="RNA 2" FT /host="Trifolium pratense cv. Nemaro" FT /isolate="IPP_Nemaro" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2011" FT /db_xref="taxon:1323524" FT CDS 94..2115 FT /codon_start=1 FT /product="coat protein" FT /note="75.7 kDa" FT /db_xref="GOA:M9VYE7" FT /db_xref="UniProtKB/TrEMBL:M9VYE7" FT /protein_id="AGJ83766.1" FT /translation="MSTEETLPPTKTIKNQNVNLIFQDTKVPIPSDNFMELLRSNAAAH FT TDTSNLWVIDVLPNFTPILMFIMHYAHIHAQAADYRVHAKSSAYTLCMYYMTVVYGYFL FT LNDLHTRPTRSVHARVWVESSWRSDFVKFLTTLPVPEFLKPILSQFHPFNTDRTKNVFF FT SPSAAGFDHDQFFGRIFPMNMFAAFHDCTATLPGNSSKVDVLRNLYTRNLYTITAPGYT FT CMIPDLIGITPDQAAATTVNYMNSKFYQTFTSIFNPVLFRDSQRRASLAALSFTAPTYP FT TNHINAYDYMFSATAPNLRELRIVLQSIIAITKDVFKSDQTLGNYVADYSSGSIIHHGY FT STYALPTWSHTPTTGKFDRFNTANTFNLVTEDARAEDICFLQRPAAEIPHTRLITDIVY FT AATTAPATSLTVPANHALYRRWPYCLRLDEDAANGFPRHDNEDLVAFSAESHAAPRVLV FT LDTPGDTVTSAHLPTLTGKVIESFELDGSTIEMPDARKSLGMQNCMFADSAIAYKYVRP FT GSYWRPRAAGGTLPPLNRAPPNSRPRLPASSLLHDRTKVFLPQLNRHVNAVPDNDALPG FT FTQITPVNVIRYIQSFLGFRTVDSSANEAALDAVPGMNESLLMIWSPYTYNPYESDDYP FT ALAYDASRHYYLTNLRTIFGTDYNLVATKHIYESFPAV" XX SQ Sequence 2353 BP; 589 A; 617 C; 360 G; 786 T; 1 other; agatttttct taagcgcccc gcctcaagaa attaagaatt cacattcgtc taaattatca 60 agttctcaca caacctctgc tctaataatt aagatgtcta ctgaagagac ccttcctcct 120 actaagacta ttaagaacca aaatgttaac ctcattttcc aagacaccaa agttcctatc 180 ccttctgata actttatgga attgctccgc tctaatgctg ctgctcacac tgatacctca 240 aatctatggg ttattgatgt actccctaac tttaccccaa ttctgatgtt tattatgcat 300 tacgctcata tccatgctca agctgccgat tatcgcgttc atgctaagtc atctgcttac 360 actttgtgta tgtactatat gactgtcgtc tatggctact tcttgctcaa tgatctacac 420 actcgtccta cccggtctgt tcatgcccgt gtttgggttg aatcatcctg gagatctgat 480 tttgttaagt tcctgactac ccttcctgtc cctgaatttc tcaagccaat cttgtcccaa 540 tttcatccat ttaacacaga cagaactaaa aatgtgttct ttagcccctc tgctgctgga 600 tttgatcatg accaattctt tggccgtatc tttcctatga atatgtttgc tgcattccac 660 gattgtactg ctacactccc tggtaactcc tccaaagttg atgtccttcg taatttatac 720 acccgtaatc tatacaccat aactgctcct ggttatactt gtatgattcc tgatttgatt 780 ggaattactc ccgatcaagc cgctgccact actgttaact atatgaattc taagttttat 840 caaactttca cttctatctt taatcctgtc cttttccgcg actcccagcg tcgagcttca 900 cttgctgctc tctcattcac tgctcccact tatccgacta accatatcaa tgcttatgat 960 tacatgttct ccgctacagc ccctaaccta cgcgaacttc gaattgtgtt acaatcaatc 1020 attgctatta ccaaagatgt tttcaaatct gatcaaacgc ttggtaatta tgttgctgat 1080 tactcctccg gctccataat ccatcatggt tactccactt atgctcttcc aacttggtca 1140 catactccta ctactggaaa atttgaccga tttaatactg ctaacacctt caatttagtt 1200 actgaagatg ctagagctga agatatctgt ttccttcaac gccctgctgc tgagatccct 1260 catacccgcc tcatcactga catagtttat gctgctacta ctgctcctgc tacttccttg 1320 actgtacctg ctaaccatgc tctctaccgc cgttggcctt actgcctccg ccttgatgaa 1380 gatgctgcta atggcttccc tcgccatgat aatgaagatc ttgttgcttt ctctgctgaa 1440 agccatgctg ctccacgcgt tcttgtcctc gatactcctg gtgataccgt gactagtgcc 1500 caccttccta ctcttacagg taaggtaatt gagtcttttg aactcgatgg ctctactatt 1560 gaaatgcccg atgctagaaa gtcccttggc atgcaaaact gcatgtttgc cgactctgcc 1620 atcgcttaca aatatgtccg tcccggatct tactggcgcc ctcgtgctgc tggtggaact 1680 ctcccaccgt tgaatcgtgc ccctccaaac tctcgtcctc gtttgccagc ctcctcactg 1740 ctacatgata gaactaaagt ttttcttccc cagttaaacc gacacgttaa tgccgttcct 1800 gataatgatg cccttcctgg tttcactcag attactcctg ttaatgtcat tcgctatatc 1860 cagtcttttc ttggatttcg cactgttgat agttctgcca atgaagctgc ccttgatgct 1920 gtccctggaa tgaatgaaag cttgctgatg atctggtccc catataccta caacccatat 1980 gagtctgatg attatcctgc tcttgcttat gatgcctcta ggcattatta cttgaccaac 2040 ctccgtacca tctttggtac tgattacaat ttggttgcca ccaagcacat ttatgagtcc 2100 ttccccgctg tttaagcaat tactctcttt tccttttaat taagttaaaa gtctttgatg 2160 tttaattggt tccctttcca gcaatcacgt ctatgctacg nggttctttt gtttcgtttt 2220 ttattcctga acttttatgt ttaatgtttt tcaacgttgt tttctattta tggaaaaaaa 2280 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa taaaaaaaaa caaaaaacca 2340 aaaaaaagtt ccc 2353 //