ID JX966244; SV 1; linear; genomic RNA; STD; VRL; 4447 BP. XX AC JX966244; XX DT 16-DEC-2012 (Rel. 115, Created) DT 16-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Rice yellow mottle virus isolate Mg11, complete genome. XX KW . XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4447 RX PUBMED; 23123216. RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago; RT Island systems and evolutionary time scale to study virus emergence"; RL Virus Res. 0:0(2012). XX RN [2] RP 1-4447 RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT ; RL Submitted (12-OCT-2012) to the INSDC. RL RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France XX DR MD5; ca820840a15b78ea1eb454109f3751ae. DR EuropePMC; PMC3791421; 23830075. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4447 FT /organism="Rice yellow mottle virus" FT /host="Oryza sativa" FT /isolate="Mg11" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /collection_date="2003" FT /db_xref="taxon:31744" FT gene 81..554 FT /gene="ORF1" FT CDS 81..554 FT /codon_start=1 FT /gene="ORF1" FT /product="putative movement and gene silencing protein" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:L0APJ2" FT /protein_id="AFZ75386.1" FT /translation="MTRLEVLIRPTLQTVEKAIAAGYTHTLTWIWHSQIWDVNGVSDPT FT LAADFNPERAGWVSVSFACTRCTAHYYTCEQVKFFTNIPSVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHAGSCRFDKYLNF" FT gene 607..3605 FT /gene="ORF2b" FT CDS join(607..2091,2091..3605) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF2b" FT /product="polyprotein" FT /note="ORF2b produced by a -1 frameshift in ORF2a; FT translation occurs as an ORF2a-ORF2b fusion protein; FT contains RNA-dependent RNA polymerase" FT /db_xref="GOA:L0ANN7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0ANN7" FT /protein_id="AFZ75388.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWITLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKRVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS FT EEYDESLRHGVKYEEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPLVTPSLPTEMPFSYVGKSGVIFGEHAGKSVC FT AAVKDAISVFPDLEGFGWPERGSKAELDSLILQAGRFNRTVCPPGLAQAVQSLQEKYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLTGLANSNGEVRRLARDLVC FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKE FT YYPCKTKGRELLEFNFCSHLIRRGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT SRIERYLRGIGRVSHKDGQEGQENQLQPRPARQEEEPTSSWALGGAPASTGSSGSGVPD FT IWDGSWTTIL" FT gene 607..2424 FT /gene="ORF2a" FT CDS 607..2424 FT /codon_start=1 FT /gene="ORF2a" FT /product="protease and VPg" FT /db_xref="GOA:L0AQJ8" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0AQJ8" FT /protein_id="AFZ75387.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWITLSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKRVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREANS FT EEYDESLRHGVKYEEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPLVTPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSTKSKESSAKPAK" FT gene 3445..4164 FT /gene="ORF4" FT CDS 3445..4164 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:B5D688" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B5D688" FT /protein_id="AFZ75389.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNAWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG FT SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4447 BP; 970 A; 1143 C; 1286 G; 1048 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtatccacgc tgctacgtgt atgacacggt tggaagttct tatacgaccg actttgcaga 120 ccgtggaaaa ggccattgcc gcgggctata cgcacacgct cacctggatt tggcattctc 180 agatctggga cgttaacggt gtgagtgatc ccactcttgc cgctgacttc aaccccgaga 240 gggctggttg ggtgtctgtg tcatttgcct gtactcggtg cacggctcac tactacacgt 300 gtgagcaggt gaaattcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgtgagcg cagtgttcag caggacgacg agatcgaccg cgaacacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggctt tgagtgaggg tcgaccagcc agtctggttt 480 acctctctcg ggacgcttgc gatatccccg agcacgccgg aagctgtcgg tttgataagt 540 acctcaactt ttgagggaac actctgccga catccaagga gcggtcgtgg ttcagactaa 600 cacgggatgg gctcttctgt tgttggtcgc tttctcactc gcaccaagga aacgacgagg 660 gtggactcca acctcctcat cgtcttggct gggttgatag cggccgcgat agtctcagag 720 cgcctacccg tgacggcgtc attgtgggca atcccctcag ctatcatagc aaattggatc 780 acgctgtcag ctcacgagag cttcagccgg ttcgttgagg gggttgagat tgagcctatg 840 tccacgcttc ggtatgggaa ggttcagtct gctccccggt ttgatccctc ccggggttat 900 gtggtcgatg tttcgtacaa cggccacgtg attccggtga tattggactt taccacgact 960 acggctctgt cggttcccca aagagtaaac cctggggtct cgatggaggc tagtcgtggg 1020 gggctcccac cgacgtccgt caaactcgaa gatgtgccgc cgagcgttgt ggttttgtac 1080 cacgactctg tcaggctagg ccttggaact agggtgcgaa ctcccacggg tcgtgatttg 1140 ctcatgacca atcaccatat cgctgctcta gagcccaatg gcatcgcata taagggtcac 1200 cttaagagag tggctctaga cgcgccagtc atcgcatgtg accatccaca catagactgt 1260 gcgttttatg aggtgcctcc caagatctgg tctctcttgg gggtcaagtc tgccagtttg 1320 aaacctttgg ttaaacagac tgcggtgtca ctcttcggag gctcgtcatc cactgacttc 1380 tcgagttgtg ttgggatagc ccagattggg gataatccat tcctgataag gcatcaaagc 1440 acaacttgca gtggctggtc gggctccccg ctctaccaca aaggttgcgt ggttggctta 1500 catataggtg ctgcggatgg ttataatgtg gcatctaatg tagcctggta cttccatacc 1560 ttcaaaaggg atgttgttgt tgagtctcca ttcgagattt acggcaaatt ccgggaagcg 1620 aactctgagg agtatgacga aagtctgcgc catggggtga aatatgagga gtacgatttc 1680 tctggtgaca caatccgggc gtcttccaac acctgggtgc gtgagagaga gagataccac 1740 gctgaggaac gtcgtaagtc cggccagctt agctgggcag atcgttttgg tgacgacagt 1800 ggcgaggatg ttgatatcga gacatcgcat cccgtagcac cgtcaatatc taaaacgcgg 1860 cggaaacggt caaagcgcgt tgagcagttc gtcgacgcgg cttctgagtg ctccttctcg 1920 ttcgagtcag ctcacgaggg gatcgtgcca gagacctcag cttatgacca cgttccttta 1980 aactgccagg gggcgggctc gagccttcgg gcgagtccgc ccttggacgg cttatccaac 2040 tcggagaata ccgctgggac tcccttggtg accccctccc ttccgacgga atgcccttca 2100 gctacgttgg aaaatcgggt gtcatctttg gagaacatgc tgggaaaagt gtctgcgcag 2160 ctgtcaaaga cgcaatctca gtattcccag atcttgaagg atttggctgg cctgagaggg 2220 gaagtaaagc agagcttgac tccctcatcc tccaagccgg ccggttcaac agaacggtat 2280 gtccccccgg gctcgcgcaa gcagtccaat cactccaaga aaagtaccca aaagtccccc 2340 ccaggcgatg cctcagggac gagtggaggt tcgacgacat cttcgacgaa gtcgaaagaa 2400 tcctctgcga aaccggcgaa gtgaactccg cctcctcgcc gggggtgccg ctgacgggcc 2460 ttgccaattc caatggcgag gtacggaggc ttgcgagaga tttggtatgt ttagctgtgg 2520 tggagcgatt gaatgcctta gcctcggttg acccccgcca gcataactgg acacccaggg 2580 agctggtaga gaaaggtctt tgtgaccctg tgcgtttgtt tgtcaagaac gagccacacc 2640 cacagaagaa attgcgtgaa cgcagattca ggctgatttc ttctgtttct ctagttgacc 2700 agctggtgga gcggatgctt ttcgggccac agaacaacac tgagatttca acttggtggc 2760 agtggccttc gaagccgggc atgggtctgt tgacccctga acaaatccgt ttggtgtggg 2820 acgatgtgtt ccagaagcac caagcccacc ctgcggctga ggcagacata tcggggtttg 2880 actggtccgt tcaggactgg gagttgtggt cagacctcgc gatccgtata aacaggggga 2940 attttcaggg aaacctcagg aaagcggcta tcagccgtta ttactgtttt atgaactctg 3000 ttttccagct ctcagatgga actctcatcc agcaggagtt acccgggctt atgaagtccg 3060 gctcttactg cacctcatcc accaattcac gcatacgctg cctaatggct gagctaatcg 3120 gctcgccctg gtgcatagct atgggtgatg attcggtgga aggatggatt gagggtgccc 3180 agtccaagta cgccgcgttg ggtcacacct gcaaggagta ctacccatgc aagaccaagg 3240 ggcgtgagct cctggaattc aacttctgtt cacacttgat caggaggggt catgctgagc 3300 tcacttcatg gccgaaggcg cttttccgct ttctgtcgag caagcatgag gactttgaag 3360 atctgtgggt tgagcttcac acgtgcgggg tgtggagcag gatcgaacga tatctgcgtg 3420 ggatagggcg agtctcccac aaagatggcc aggaagggca agaaaatcaa ctccaaccaa 3480 ggccagcaag gcaagaagaa gagccgacgt cctcgtgggc gctcggcgga gccccagctt 3540 caacgggctc cagtggctca ggcgtcccgg atatctggga cggttcctgg accactatcc 3600 tctaatgcct ggccggtcca ctccgtggaa ttcctgatgg attttaaacg gagtgccaca 3660 tcggcggatg cggtagcatt taattgtgtg ccgtttaatc tgcctcgggt gtggagtctt 3720 gcacgttgtt actcgctgtg gaagccaaca cggtgggatg tagtttacct ccccgaggtg 3780 agcgcggcga cggctggaag tattgagatg tgttatctct acgactatgc tgatgctatc 3840 ccaagtgaca cgggcaagat gagcaggacg gcgggcttcg tcacctctag cgtttggtac 3900 ggcgcggagg gctgccattt gttgaatggc ggttcagcac ggaatgccgt ggtcgcctcg 3960 atggattgct ctcgagtcgg ctggagacgc gtaactagtt caattcctag tagcgtggat 4020 cccaacgtcg taaataccat actgccagca aggctagctg tgcggtcgtc aatcaaaccg 4080 acggtcgatg atgtgccggg gaaactctat gccatcgtca gtatggtcct gcgggatccg 4140 gttgatccaa cactcaatac gtgaaccgga ttcaatggag ataggtattg gcaccagtga 4200 tgatccacgg attagctcag agatcgacta ccctgaaaag gaagttgagc gtttgcgaac 4260 gcgggctgag tcctacgaga tgatactggc gcctatccca tgtggggaat cgtacccacg 4320 tttcaaccca aagcgatcca cacgctggat agcgtttacc tggttggttt cggagctgcc 4380 aggaggacct cttcacactc cgaattccac attctttccg agagaattct cgggatgggt 4440 gggggag 4447 //