ID JX866661; SV 1; linear; genomic RNA; STD; VRL; 714 BP. XX AC JX866661; XX DT 19-APR-2013 (Rel. 116, Created) DT 19-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Pepino mosaic virus isolate VFBC12-04 coat protein gene, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC Publication Status: Online-Only RP 1-714 RX PUBMED; 23587202. RA Ling K.S., Li R., Bledsoe M.; RT "Pepino mosaic virus genotype shift in North America and development of a RT loop-mediated isothermal amplification for rapid genotype identification"; RL Virol J 10(1):117-117(2013). XX RN [2] RP 1-714 RA Ling K.-S., Li R., Bledsoe M.; RT ; RL Submitted (23-SEP-2012) to the INSDC. RL Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah RL Highway, Charleston, SC 29414, USA XX DR MD5; c7ceba479728550e443c8fe56750f62f. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR v. Lasergene10 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..714 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="VFBC12-04" FT /mol_type="genomic RNA" FT /db_xref="taxon:112229" FT CDS 1..714 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:M9P8U7" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:M9P8U7" FT /protein_id="AFZ62561.1" FT /translation="MENQPTASNPSEVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 714 BP; 194 A; 193 C; 145 G; 182 T; 0 other; atggaaaacc aacctacagc ttctaaccca tcagaagtac caccaactgc tgctcaagct 60 ggtgcccaga gcccagccga cttctcaaat cctaatacag ctccttccct aagtgatttg 120 aagaagatca aatacgtgtc aactgtcact tcagttgcca ctcctgctga aattgaggcc 180 cttggcaaga tctttactgc catgggttta gcagccaatg agaccggacc tgccatgtgg 240 gacctcgctc gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tataggtgcc 300 acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga tcgtatcaat 360 atcacaccca gacaattctg catgtatttt gcaaaaattg tttggaacat actgttagac 420 agcaatgtgc cacctgccaa ctgggcaaaa ttgggctatc aggaagatac caagtttgct 480 gcttttgact tctttgatgg agtcacaaat ccagctagtc tacagcctgc tgatggccta 540 atcaggcagc ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt 600 gcccgccaga aaatatccac tggtaactac atcaccaccc ttggcgaagt tacacgtggt 660 cacatgggcg gcgctaacac tatgtacgca attgatgcac ctcctgaact ttaa 714 //