ID   JX866612; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
XX
AC   JX866612;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate VFTX12-09 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-714
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-714
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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DR   MD5; 270d722bff0f798a3fa35c456ce23414.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="VFTX12-09"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1..714
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="AFZ62512.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 714 BP; 195 A; 200 C; 150 G; 169 T; 0 other;
     atgcctgaca caacacctgt tgctgctact tcaagtgcac cacccacagc caaagatgct        60
     ggtgccaaag ctccttctga cttctcaaat cccaatacag ctcctagtct cagtgatttg       120
     aagaaagtca agtatgtctc cacagtgacc tccgtggcca caccagctga aattgaagcc       180
     ctaggcaaaa tcttcaccgc tatgggcctt gctgccaatg agactggtcc ggccatgtgg       240
     gatctagctc gtgcatatgc tgacgtgcag agttctaaat cggcacagct gattggagct       300
     accccttcca accctgcact atcacgccga gcccttgctg ctcagtttga tcgaatcaat       360
     ataaccccaa ggcaattttg catgtacttt gccaaagttg tttggaacat acttctcgac       420
     agcaatattc caccagcaaa ttgggccaaa cttggttacc aagaagatac aaaatttgct       480
     gcatttgact tcttcgatgg agtcaccaac cctgccagcc tgcagcctgc tgatggtctt       540
     atcaggcagc caaatgagaa agaactagct gctcactccg tagctaagta cggcgccttg       600
     gctaggcaaa agatctccac aggtaattat attaccacac ttggagaagt cacacgtgga       660
     cacatgggag gagctaacac catgtacgcg atagacgcac cccctgaact ttaa             714
//