ID JX865650; SV 1; circular; genomic DNA; STD; VRL; 2593 BP. XX AC JX865650; XX DT 19-DEC-2012 (Rel. 115, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Vic40:10 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RA Gonzalez-Aguilera J., Tavares S.S., Sobrinho R.R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., da Silva D.J.H., Zerbini F.M.; RT "Genetic structure of a Brazilian population of the begomovirus Tomato RT severe rugose virus (ToSRV)"; RL Trop Plant Pathol 37(5):346-353(2012). XX RN [2] RP 1-2593 RA Gonzalez-Aguilera J., Tavares S.S., Ramos-Sobrinho R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., Silva D.J.H., Zerbini F.M.; RT ; RL Submitted (25-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P. H. Rolfs, RL s/n, Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; f8121fc10491174491211456915e0cb0. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMan v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Vic40:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7WF95" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K7WF95" FT /protein_id="AGA16494.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:Q3HM69" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3HM69" FT /protein_id="AGA16496.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7WZH3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZH3" FT /protein_id="AGA16492.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:L0CLW3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0CLW3" FT /protein_id="AGA16495.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIDWGEFQIDGRSARGGCQTANDAAAEALNALSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTTVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="AC4" FT /note="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0CM85" FT /protein_id="AGA16493.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNPMSTRTEILSIGGNSKSTEEVQEAVARQLTTLPQKL" XX SQ Sequence 2593 BP; 665 A; 530 C; 597 G; 801 T; 0 other; accggatggc cgcgcgattt ttcacccatt tagtttcaat taaagtaaag tgattgtctg 60 tggcccaatc atattgggcc tgtcgagctt agatatttgt aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatacactt tactttttct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattttt 240 ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagttga 540 agaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac 600 ctatggattt tggccaggtg tttaacatgt ttgacaacga gcctagcact gcaactgtta 660 agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgccaag gttactggtg 720 gacagtatgc cagtaatgag caggcattag tgaagcgctt ttggaaggtc aacaaccacg 780 tagtctacaa ccatcaggag gcagggaaat acgagaatca tactgagaac gccttgctat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taaacgatct agatacaata agactaaata tttaaatcta gttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200 cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagcaattct ttccaatgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 agcttgcatc tctctcggta cggtagtgaa agaggagagg ggaaacgtag gggcccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagcttct cacggattat ctgcaaagcc acgtctttgg aaagtgcgtt 2040 caaagcttct gcggcagcgt cgttagctgt ctggcaaccg cctcttgcac ttcttccgtc 2100 gatttggaat tccccccaat cgatagtatc tccgtccttg tcgacatagg atttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc cctgcaaacc ttgatgaact ttttatttgt 2340 aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg actcctacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctc tttaaggaga ttgctacacg tggcggccat 2580 ccgttataat att 2593 //