ID JX865620; SV 1; circular; genomic DNA; STD; VRL; 2594 BP. XX AC JX865620; XX DT 19-DEC-2012 (Rel. 115, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Vic06:10 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2594 RA Gonzalez-Aguilera J., Tavares S.S., Sobrinho R.R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., da Silva D.J.H., Zerbini F.M.; RT "Genetic structure of a Brazilian population of the begomovirus Tomato RT severe rugose virus (ToSRV)"; RL Trop Plant Pathol 37(5):346-353(2012). XX RN [2] RP 1-2594 RA Gonzalez-Aguilera J., Tavares S.S., Ramos-Sobrinho R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., Silva D.J.H., Zerbini F.M.; RT ; RL Submitted (25-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P. H. Rolfs, RL s/n, Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; e6aee9e96af0287760eb2f44ef25d527. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMan v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2594 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Vic06:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:A7UMY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7UMY2" FT /protein_id="AGA16344.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:L0CM68" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0CM68" FT /protein_id="AGA16346.1" FT /translation="MDSRTGELITVRQAENGVYIWEISNPLYFKISRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLNRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:C1KG77" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C1KG77" FT /protein_id="AGA16342.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFK" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:L0CLK2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0CLK2" FT /protein_id="AGA16345.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNVPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="AC4" FT /note="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0CLX0" FT /protein_id="AGA16343.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWYPQQGQHISIRTFRELS FT HRPTSNHMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2594 BP; 662 A; 533 C; 598 G; 801 T; 0 other; accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag tgattctctg 60 tggcccaatc atattgggcc tgtcgagctt acatatttgt aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatacactt tacttttgct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattttt 240 ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagttga 540 agaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac 600 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact gcaactgtta 660 agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgctaag gttactggtg 720 gacagtatgc cagtaatgag caggcattag tgaagcgctt ttggaaggtc aacaacaacg 780 tagtctacaa ccatcaggag gcagggaaat acgagaatca tactgagaac gccttgctat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taaacgatct agatacaata agactaaata tttaaatcta tttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200 cggtgtacat tggatcctcc actctgctta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgta cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagcaattct ttccagtgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 agcttgcatc tctctcggta cgctagtgaa agaggagagg ggaaacgtag gggcccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagcttct cacggattat ctgcaaggcg acgtctttgg aaggtacgtt 2040 caaggcttct gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc 2100 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatatg atttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggatac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc cctgcaaacc ttgatgaact ttttatttgt 2340 aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct tcgcttttat ttggaagcgc tttggagctg atggcatatt 2460 tgtaaatatg agtcttgcta ccaattggta gcagctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctc tttaaggaga ttgctacacc gtggcggcca 2580 tccgttataa tatt 2594 //