ID   JX658566; SV 1; linear; genomic RNA; STD; VRL; 2319 BP.
XX
AC   JX658566;
XX
DT   25-NOV-2012 (Rel. 114, Created)
DT   25-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Grapevine partitivirus isolate 3138-03-531 RNA dependent RNA polymerase
DE   (RdRp) gene, complete cds.
XX
KW   .
XX
OS   Grapevine partitivirus
OC   Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
XX
RN   [1]
RP   1-2319
RA   Rott M.E., Belton M.;
RT   "Detection of grapevine and tree fruit viruses by next generation
RT   sequencing";
RL   Unpublished.
XX
RN   [2]
RP   1-2319
RA   Rott M.E., Belton M.;
RT   ;
RL   Submitted (07-SEP-2012) to the INSDC.
RL   Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich
RL   Rd, North Saanich, British Columbia V8L 1H3, Canada
XX
DR   MD5; a9d7a1865ac95c49769c6ea072bba26b.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLCbio Genomic Workbench v. 4.7
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2319
FT                   /organism="Grapevine partitivirus"
FT                   /host="Vitis vinifera"
FT                   /isolate="3138-03-531"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /collection_date="Sep-2011"
FT                   /db_xref="taxon:1256786"
FT   gene            73..2214
FT                   /gene="RdRp"
FT   CDS             73..2214
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /db_xref="UniProtKB/TrEMBL:K7XX00"
FT                   /protein_id="AFX73019.1"
FT                   /translation="MSIHKLRSYLQERKERIKFEWQRFQTSRDASSPPPSLTDSDIRRH
FT                   FENQRDRQQEFDSHLVLEHEFNAIKHTMQLQNDTAREPFEFTSTQSFERFPDNRSPASG
FT                   IIGVPKRFHSGQQVNPTESLPETGFQVHHLLRYLLRNKYPTYEYYVDKYVRPLGTTDAT
FT                   FIDFNRQQVETAPISDFRKDRVLTHMMKRLNATPFLPLHFVDTQFAKLPLHTGTGYFNR
FT                   HSFRSRAHAKYSHPPEYAQKQTSKGYFYNAFYETARTAIHRIKESGLPFTFEFRDDKTD
FT                   DENFENLASALNAFFDNHATMLFTRNHISERDGILKQRPVYAVDDLFLLIEVMLTFPLL
FT                   VMARKPESCIMYGLETIRGAMHYIDRLARNYDSYFTIDWSQYDQRIPRSITDIYYTDFL
FT                   ERLIVISHGYQPTYEYPSYPDLTAQSMFNKMNNLLHFLHVWYNNMTYVTADGYGYRRTT
FT                   AGVPSGLFNTQYLDSFGNLFLIIDGFIEYGYSDDQIDDILLFIMGDDNSGFTHIPLFDL
FT                   EKFLTWFEKYALNRYNMVLSKTKSVITDIRGKIEMLGYQANYGQPLRPIGKLIAQLCYP
FT                   ERGPKDKYMSYRAIGIVYASAGQDVEFYKFCKDVYHLFLPFAAPPEDIKLSHFQSYFPG
FT                   YLRALDTPDEFFQIDHFPTIWEIRHVYSRYAGPLDYAPKWNYAHFMHDPNVIPPSAMTM
FT                   AEYRELHKIPRLQTPSFMH"
XX
SQ   Sequence 2319 BP; 687 A; 616 C; 364 G; 652 T; 0 other;
     gcccgcccac gacttatcaa atcttaccca acttttctct atcttagaac aaatttcact        60
     ctccctggca atatgtctat ccataaacta cgatcttatc ttcaagaacg taaggaacga       120
     atcaaattcg aatggcagcg atttcaaaca tcccgtgatg cttcttcgcc acctccgagt       180
     cttaccgatt cagacatccg cagacacttc gagaaccaac gtgacagaca acaagaattt       240
     gactcacacc ttgtcctaga gcatgaattt aacgctatca agcataccat gcaattacaa       300
     aatgacacgg cccgtgaacc atttgaattc acaagcacgc aaagtttcga acgatttccc       360
     gacaaccgct ccccggcttc tggaattatt ggagttccca aacgctttca ttctggacaa       420
     caagtgaatc ccaccgaatc acttcctgaa acaggctttc aagttcatca ccttttaagg       480
     tatctactta ggaacaaata tccaacgtac gaatattacg tcgacaaata cgtccgtcct       540
     cttggcacta ccgatgcaac ttttattgac ttcaaccgtc aacaagttga gactgcaccg       600
     atctccgact tccgaaagga tcgagtactc acacacatga tgaaacgatt gaatgctacc       660
     ccattccttc ctctccattt cgtagatact caattcgcta aacttccact tcacactgga       720
     actggttatt ttaaccggca ctcttttcga tcccgagctc acgccaaata ctcgcaccca       780
     cctgagtacg ctcaaaagca gacatctaaa ggctatttct acaatgcctt ttacgaaacc       840
     gctcgcaccg caatccaccg aataaaagaa tctggtctac catttacttt tgaatttcgt       900
     gacgataaaa cagacgacga gaacttcgaa aatcttgctt ccgcactcaa cgcattcttt       960
     gacaaccatg ccaccatgct tttcactcga aatcacatct cagaacgaga cggaatcctt      1020
     aaacagagac ctgtctacgc cgttgatgac ttatttctat taattgaagt tatgttgaca      1080
     ttcccgcttc ttgtcatggc ccgaaaaccc gaatcatgca ttatgtatgg tctcgaaact      1140
     attcgtggcg caatgcacta catagatagg ctggcacgca actatgattc ctatttcaca      1200
     atagactggt ctcaatatga ccaaagaatc ccgcgctcca tcactgacat ctactacact      1260
     gactttcttg aacgattaat cgttattagt catggatatc aacctaccta cgagtacccc      1320
     tcctaccccg atctcacagc tcagtcaatg ttcaataaaa tgaacaactt actgcacttt      1380
     ttacatgtgt ggtacaataa tatgacttac gttaccgctg atggttatgg ctaccgccga      1440
     actaccgctg gtgtaccttc tggtctattt aatactcaat accttgattc atttggaaat      1500
     cttttcctta taatcgatgg cttcattgaa tatggttatt ccgatgacca aattgacgac      1560
     attctgctgt tcattatggg tgacgacaac tctggtttta cgcacatacc actgttcgac      1620
     ctcgagaaat ttctcacttg gttcgaaaag tacgcgctca accgatacaa catggttctt      1680
     tcaaagacca aatctgtcat cactgatata cgaggaaaaa tcgaaatgtt aggctaccaa      1740
     gctaactacg gtcaacctct ccgcccgatc ggcaaactta tcgcacaact gtgctatcct      1800
     gaacgtggac caaaagacaa atacatgtct taccgcgcga ttggaatagt atatgcgtcc      1860
     gctggtcaag atgttgaatt ttacaaattc tgcaaagatg tttatcatct attcttacca      1920
     ttcgcagctc caccagaaga tataaagtta tcccactttc aatcttactt ccctggctac      1980
     ctccgagcac tggacacacc tgatgagttt ttccaaattg atcacttccc cacaatctgg      2040
     gaaatccgac acgtctattc tagatatgct ggacctctcg attatgcacc gaaatggaat      2100
     tatgctcact ttatgcatga tcccaacgtg atcccacctt ctgctatgac tatggctgaa      2160
     tatcgtgaat tacacaaaat tccgagactt caaactccta gtttcatgca ctaaggctac      2220
     ttttgccgtt aggtaaaact gtcatttaaa ctgatatttt atctctctta tttttataca      2280
     aaatccccta aaaaatcaaa ctaaaaacaa actaaacca                             2319
//