ID JX508290; SV 1; linear; genomic RNA; STD; VRL; 6226 BP. XX AC JX508290; XX DT 03-MAR-2013 (Rel. 116, Created) DT 13-JUN-2013 (Rel. 117, Last updated, Version 4) XX DE Andean potato mild mosaic virus isolate Hu, complete genome. XX KW . XX OS Andean potato mild mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6226 RX DOI; 10.1016/j.virusres.2013.01.014. RX PUBMED; 23357297. RA Kreuze J., Koenig R., De Souza J., Vetten H.J., Muller G., Flores B., RA Ziebell H., Cuellar W.; RT "The complete genome sequences of a Peruvian and a Colombian isolate of RT Andean potato latent virus and partial sequences of further isolates RT suggest the existence of two distinct potato-infecting tymovirus species"; RL Virus Res. 173(2):431-435(2013). XX RN [2] RP 1-6226 RA Kreuze J.F., de Souza J., Flores B., Cuellar W.; RT ; RL Submitted (20-AUG-2012) to the INSDC. RL International Potato Center (CIP), Avenida la Molina 1895, Lima 12, Peru XX DR MD5; 73f0f8ae671b53e5f65a2fc5cdb1b4a1. XX CC ##Assembly-Data-START## CC Assembly Method :: Velvet's Assemblyassembler v. 1.4; Seqman CC II (DNAStar II) v. 5.03 CC Coverage :: 1724x CC Sequencing Technology :: Sanger dideoxy sequencing; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6226 FT /organism="Andean potato mild mosaic virus" FT /host="Solanum tuberosum" FT /isolate="Hu" FT /mol_type="genomic RNA" FT /country="Peru" FT /collection_date="1977" FT /db_xref="taxon:1296569" FT CDS 104..1987 FT /codon_start=1 FT /product="putative movement protein" FT /note="ORF1; MP" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:M1RUZ7" FT /protein_id="AGG15960.1" FT /translation="MNHVFPDCPRSSQFNYSSRCFYKSNSQCRRGTSPRLSIPISLAAP FT KRVSATPSLLGHPELWSRHHPSPSPYSQNSRNIHAVQSLALSCQNPFHCHVHEAQQVFK FT TPAPERQLYHSHQLPLDCRGHHQVPRDFSLVPYHRVLLHARRADVLLSSADIDSLLREP FT QSSDSLLLSCGSPRVSLHRPFSTSRSLLLPDFRKHSPLHSGVPPLRSLQPASSSPVLAK FT GGFHFSLFTPALSHEAGILGPRPLHPDPERTASKTFPQSPPKSCPNSPPLQPQQQPSPV FT HRSSLQQFGTSRQPGFLPDSRLPRVAFRHVSESTSPPSAHSNRSVQCSLHLHKSRSDSP FT NFRPSRVCPNTEQQGRVLLGYPKCLGQSPDLRSAQLSPSTLSKLPILPEPVQTTPIALL FT SALENVLVGSLAIPLIFSPSSPGDEFKFSNSDSKATFSFPSPSSISLHFDCTSLQHGAF FT PTAALSPLPGKVSPVGCFPSPKKPSSKASICSKDRVETPISRQLHSKAQHRSPNHFDRP FT SEHPSSSEILPLSYPSTASRPISSESSSSEVPALLVSSGTPCVQSGALSPVSSSSYSSC FT GSLSSYSSPPRFPENQPRVAPTESTPRISASELRSRLLELHLKYPFIDEDC" FT CDS 111..5543 FT /codon_start=1 FT /product="viral replication protein" FT /note="ORF2; replicase" FT /db_xref="GOA:M1RFM5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M1RFM5" FT /protein_id="AGG15961.1" FT /translation="MSFQTALEALNSTTHRDASTNPILNAVVEPLRDSLSQYPWLLPKE FT SLPLLLSWGIPNSGLGTTPHPHPIHKTVETFMLFNHWLYLARIPSTVMFMKPSKFSKLR FT LLNDNFTTLINFRLTAADTTRYPETSLSYPTTECCFMHDALMYFSPAQILTLFSESPNL FT QTLYCSLVVPPESHFTDLSLLPEVYSYQISGNTLHYIPESHHSGAYNQPLQALSWLKVA FT SISHSSLQLSVTKLESWGPVHSILIQRGLPPKPSRNLHPRVAPTLLRSNPSNNLLQSTA FT LLFNNSEPQDNLVSFRIPDCLELPSATFLNQPLRHRLIPTAVYNALFTYTRAVRTLRTS FT DPAGFVRTQSNKAEYSWVTPNAWDNLQTFALLNSPHRPSVSYQFFLSPFKQLQLHFSQH FT WRTYLLALSPFLSSFPLVPLVMNLNFPIPTPRLLSAFHHHHQSPSTLIVRPFSTGPFQP FT QLSLPYPEKLARLVAFLHQRNLLPKPPFVPKIEWKRRSLVSFIPKPNIVLPTISTALLS FT TPLLLKFFHSLTPQQLHDRYHLNLHPPKFQLSWYLQEHHVSNLEPFLPYPLLPIPPVDH FT SHPTPRPLAFPRINPELHQLNPPQESQPQNSDLASSSSISSIPLSTRTVDHSPITIAPT FT EPRSQRAIDDASPSPEPDPSNSLEPPIPASISTVLPSGALTFESSPIPSTCLNSTPEPS FT TAHSSLSEDPTAVGLAKPFSMLFPADYFPMSAEFITRVRHVPSSQLPMPKLNCLLTSFS FT ALTFTPVAALWDSLQSKVPDSLLSNPEIESLGMSTDLLTVLCYVYHVHCILHAQTGVYH FT YGIASSSQVINLHYEPGPPSHFSTTPRVVASRPHSNPGNTPLVRSALRFKYNGHYLPFH FT QAHSHETSLMHAKNLISNMKNGFDGILSTITTSKSGPSPRERITTLDSLIDVSSPRQVS FT VIHIAGFAGCGKTHPIQQLLKTKPFHDFRISTPTNELRSEWKRDMAPSPENLWRFSTWE FT SSLLKSSQILVIDEIYKLPRGYLDLSILSDPSLQLVIILGDPLQGEYHSTSPHSSNHFL FT PSEVQRLRTYIDCYCWWTYRLPTVLADLFGVNTFNQEKGFVRALSSHPPNSKNLTNAIN FT TATSLQQMGHHAITISSSQGITFNEPHTILLDRHTNLLSPNNCLVALTRSKIGVNFVGA FT LQLASNSFGTNYMFSQALCGGFVDLAQIFPYLMPSLPKLHEPIKSRNQRFVAGHSFFPV FT VNRRLLLRSHLPVTLPPHIPLSHTKDHLISNPVVLGSSLDSRLETNHLPPTRLPLHFDL FT EPSIPSQPTSQSISILFPTPCSPGIYGETFENLAAFFLPAHDPDIKEVLHGDLKSNQFP FT YLDQPFHLSCQPSSLLAPVHSPARDPTLLTASIKKRLRFRPSLHPYQFTPNDQLLGSLL FT FNSLCRAYNRNPASSVPFDSNLFAECICINEYAQLSSKTRATIVANHQRSDPDWRHCAV FT RIFAKAQHKVNDGSIFSNWKACQTLALMHDYVILVLGPVKKYQRVFDSLDRPSHIYYHC FT GHTPTQLSQWCQQHLKHSSYTTNDYTAFDQSQHGEAVILECLKMQRLNIPPFLISLHST FT LKRNVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYSLSANPILISGDDSVIAGSP FT LVSPSWPQIEPLLHLRFKTEHTKYPLFCGYYLSPLGAARNPFALFAKLMICVDDGSLED FT KKLSYLSEFSVGHLSGDCIQAILPPSLIKYQSACHDFFCRNCTPSQKILLSLDPIPENK FT ILQLLLKVRWASQAFFSYLPQKARELLISRSSLPSLHSDPKISLLESELLPFFN" FT CDS 5546..6112 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; CP" FT /db_xref="GOA:M1R9N5" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1R9N5" FT /protein_id="AGG15962.1" FT /translation="MEDQTPAVSKQPSINAPGYNLPPPSSQLSSSFELPFQFQATTFGA FT AETAAQVSLSSSTVISTIAKNFRHAKLIQCHAIITPTYLAIANPITINLVWVPDSSTAK FT PSEILNVYGGTSFTFGGAFCSTKSIIVPLPMNSVNLMLKDSALYTDGPKLLAYSPAPAT FT PSKSPVATIQISGKILLSSPLLQAS" FT misc_feature 6144..6226 FT /note="similar to tRNA-Val; may have multifunctional role FT in viral replication, translation, and viral RNA stability" XX SQ Sequence 6226 BP; 1344 A; 2154 C; 970 G; 1756 T; 2 other; ggtaataatc ataaccagaa caaacccttt ttcaagcctt tgttcttttc ttttctgtct 60 taattccgta acggatctgc accttcctag aacctgcagt gtcatgaacc atgtctttcc 120 agactgccct cgaagctctc aattcaacta ctcatcgaga tgcttctaca aatccaattc 180 tcaatgccgt cgtggaacct ctccgcgact ctctatccca atatccctgg ctgctcccaa 240 aagagtctct gccactcctt ctctcctggg gcatcccgaa ctctggtctc ggcaccaccc 300 ctcaccctca ccctattcac aaaacagtag aaacattcat gctgttcaat cactggctct 360 atcttgccag aatcccttcc actgtcatgt tcatgaagcc cagcaagttt tcaaaactcc 420 ggctcctgaa cgacaacttt accactctca tcaacttccg cttgactgcc gcggacacca 480 ccaggtaccc agagacttct ctctcgtacc ctaccaccga gtgctgcttc atgcacgacg 540 cgctgatgta cttctctcca gcgcagatat tgactctctt ctcagagagc cccaatcttc 600 agactcttta ctgctctctt gtggttcccc cagagtctca cttcaccgac ctttctctac 660 ttcccgaagt ctactcttac cagatttccg gaaacactct ccattacatt ccggagtccc 720 accactccgg agcctacaac cagcctcttc aagccctgtc ctggctaaag gtggcttcca 780 tttctcactc ttcactccag ctctcagtca cgaagctgga atcctggggc cccgtccact 840 ccatcctgat ccagagagga ctgcctccaa aaccttcccg caatctccac ccaagagttg 900 ccccaactct cctccgctcc aaccccagca acaaccttct ccagtccacc gctcttctct 960 tcaacaattc ggaacctcaa gacaacctgg tttccttccg gattcccgat tgcctcgagt 1020 tgccttccgc cacgtttctg aatcaacctc tccgccatcg gctcattcca accgcagtgt 1080 acaatgctct cttcacttac acaagagccg ttcggactct ccgaacttca gacccagccg 1140 ggtttgtccg aacacagagc aacaaggccg agtactcttg ggttacccca aatgcttggg 1200 acaatctcca gaccttcgct ctgctcaact ctccccatcg accctcagta agctaccaat 1260 tcttcctgag cccgttcaaa caactccaat tgcacttctc tcagcactgg agaacgtact 1320 tgttggctct ctcgccattc ctctcatctt ttcccctagt tcccctggtg atgaatttaa 1380 attttccaat tccgactcca aggctacttt cagctttcca tcaccatcat caatctccct 1440 ccactttgat tgtacgtccc ttcagcacgg ggcctttcca accgcagctc tctctccctt 1500 acccggaaaa gttagcccgg ttggttgctt tccttcacca aagaaacctt cttccaaagc 1560 ctccatttgt tccaaagatc gagtggaaac gccgatctct cgtcagcttc attccaaagc 1620 ccaacatcgt tctcccaacc atttcgaccg cccttctgag cacccctctt cttctgaaat 1680 tcttccactc tcttacccct caacagcttc acgaccgata tcatctgaat cttcatcctc 1740 cgaagttcca gctctcttgg tatcttcagg aacaccatgt gtccaatctg gagccctttc 1800 tcccgtatcc tcttcttcct attcctcctg tggatcactc tcatcctact cctcgccccc 1860 tcgctttccc gagaatcaac ccagagttgc accaactgaa tccaccccaa gaatctcagc 1920 ctcagaactc agatctcgcc tcctcgagct ccatctcaag tatcccttta tcgacgagga 1980 ctgttgatca ttccccaatc acgattgctc ccactgaacc tcgttcccaa agagcaatcg 2040 atgacgcctc gccttctcct gagcccgatc cctccaactc tctcgaacca cccattcctg 2100 cctccatttc gacggtcctc ccttccggag ctctcacgtt cgagtccagc cccattcctt 2160 ccacttgttt gaattccact ccagagcctt ccacagctca ttcttccctt tctgaggatc 2220 ccacagctgt tggcttggcc aagcctttct cgatgctgtt tccagccgac tattttccaa 2280 tgtccgctga gttcatcact cgggtcagac atgtaccttc cagtcaactg ccaatgccca 2340 agctcaactg tctactaact tctttttcag ctctcacctt cactccagtg gccgctctct 2400 gggattcgct ccagtccaaa gtccctgact ctctcctttc aaatccagaa attgagagtc 2460 tgggtatgtc caccgaccta cttaccgttt tgtgttatgt gtaccatgtt cactgcatcc 2520 tgcatgcaca gactggtgta tatcattacg gtattgctag ttccagccaa gtcatcaatc 2580 tccattatga gcctggccca ccttcccatt tctcaacgac tcctcgcgtg gtcgcgtcca 2640 gaccccattc caacccaggc aacacccccc ttgttcgctc agccctccgc ttcaagtaca 2700 atgggcacta ccttccattc catcaagcac attctcatga gacttctctc atgcatgcca 2760 aaaatcttat ctccaacatg aaaaatggct ttgatggcat cctcagcacc atcaccactt 2820 ccaaatctgg cccttccccc cgtgagcgaa tcaccactct tgactctctg atcgatgtta 2880 gttctccccg ccaagtctct gtcatccaca tcgctggttt cgccggctgt ggaaaaacgc 2940 accccatcca acagctcttg aaaactaagc catttcacga ctttcgcatc tcaactccca 3000 ccaacgagct tcgctctgag tggaaacgag acatggcccc ctcccctgaa aacctctggc 3060 gtttttccac ctgggaatct tcccttctca agtcctccca aatcctagtc attgacgaga 3120 tctacaagct ccccaggggt tacttagatc tctccatcct ctctgaccct tctctccaac 3180 tggtcattat acttggcgac cctctccaag gtgaatatca ttccacttcc ccccacagct 3240 ccaatcactt ccttccttca gaggttcaac gtcttcgcac ctacattgat tgttactgct 3300 ggtggactta tcgccttcca actgttctcg ctgatctctt cggtgttaac acgttcaatc 3360 aagaaaaagg tttcgttcga gccctctctt cccatcctcc caactccaaa aatctcacca 3420 atgccattaa caccgccacc agtctgcaac aaatgggtca tcacgccatc accatcagct 3480 ccagtcaagg cattactttt aatgaacctc acactatcct ccttgatcgg cacaccaact 3540 tgctctctcc aaacaattgt ctggttgctc ttacccgaag caaaattggt gtcaatttcg 3600 ttggagccct tcaattggct tccaattctt ttggcactaa ttacatgttc tcgcaggccc 3660 tttgtggtgg tttcgtcgac cttgctcaga tcttccctta tctgatgcct tctctgccca 3720 agctccatga gcctatcaag agccgaaatc agcgcttcgt cgcagggcac tcattcttcc 3780 ctgttgtcaa tagacgcctt ctcctcaggt ctcacctccc tgttacatta cctccacata 3840 ttcccctctc tcacaccaag gatcatttga ttagcaatcc agtcgtgctt ggttcttctc 3900 ttgactctcg tcttgagact aaccatttgc ctcccactcg gttgcctctt cattttgatc 3960 tagagccttc catcccgtct cagcccacca gtcagtccat ttccattctt ttcccaaccc 4020 cttgttctcc tggcatttat ggtgaaactt tcgagaacct tgcagcattc ttcttgcccg 4080 cacatgatcc agacatcaaa gaagtgctcc atggtgatct gaagtccaac caatttccat 4140 acctcgatca accttttcat ctttcctgcc aaccttcctc tctcttagct cccgtccatt 4200 cgccagctcg tgaccccact ctcttaactg cttccatcaa aaaaagactc cgtttcagac 4260 ctagtctcca tccctaccag ttcactccca acgaccagtt gctcgggtct ctcctcttca 4320 attctctttg cagagcatac aatcgcaatc cagcctcttc tgtccctttc gacagcaacc 4380 tgtttgctga gtgcatttgt atcaatgagt acgctcagct cagctccaaa acccgcgcca 4440 ctattgtcgc caatcaccaa cgttctgatc ctgattggcg tcactgcgct gtccgcattt 4500 ttgctaaggc ccagcacaaa gtcaacgatg gttcaatatt ctccaactgg aaggcttgtc 4560 agactcttgc tttaatgcat gattatgtca tccttgttct tggtcctgtc aagaagtacc 4620 agcgagtttt tgattccctc gaccggccct cacatatcta ttatcattgc ggtcacaccc 4680 ctactcagct ttctcaatgg tgccagcaac acctcaagca cagttcttac accaccaatg 4740 attacactgc ttttgatcaa tcccaacatg gcgaagctgt cattctggaa tgccttaaaa 4800 tgcaaaggct caacattccc ccttttctga tctccttgca ttccacactc aagcgcaacg 4860 tttccaccca attcggtccc ctgacctgca tgcgcctcac aggtgagcct ggcacttatg 4920 acgacaactc agattacaat ctggctgtca tctactctca gtactctctg tcagccaatc 4980 ccatcctcat atccggcgat gattctgtca ttgctggttc cccccttgtt tctccatctt 5040 ggccacaaat tgagcccctt cttcaccttc gtttcaaaac tgagcacacc aaataccctt 5100 tgttttgcgg gtactatctc tctcctctcg gagctgcaag gaacccattt gcgctcttcg 5160 ccaaactcat gatctgcgtt gatgatggaa gccttgagga caaaaaactg tcttacttgt 5220 ctgaattctc agtaggtcat ctctccggcg actgcatcca agccatctta cctccatcgc 5280 tcatcaagta tcagtcagca tgtcatgact tcttctgccg caattgcacc ccatcycaaa 5340 aaatccttct cagcctggat cccatccctg agaacaagat ccttcaactc ctcctcaaag 5400 ttcgttgggc ttcacaggcc ttcttttctt acctccccca aaaagccaga gagttgctaa 5460 tctctcgctc cagcctycct tcccttcact ctgatcccaa aatctcccta ctagagtctg 5520 aattgcttcc ctttttcaat taattatgga agatcagact cctgccgttt ctaaacagcc 5580 ctccattaat gctcccgggt acaatctccc acctcctagc tctcaactct cttcctcttt 5640 tgagctgcct tttcagttcc aggctaccac cttcggcgct gccgagacag ctgctcaagt 5700 tagtctctcc tcttccaccg tgatctccac cattgccaag aactttcggc atgctaagct 5760 cattcaatgc cacgccatca ttactcccac ctacttggcc atagccaatc ctatcaccat 5820 caacctcgtc tgggtccctg acagctccac cgcaaagccc agcgagatac tcaatgtcta 5880 tggcggcact tctttcactt ttggcggtgc cttttgctcc accaaatcca tcattgttcc 5940 tctccccatg aactccgtta acctcatgct caaggacagt gccctctaca ccgacggccc 6000 taagctcctt gcatattctc ctgccccagc cactccttcc aaatccccag tggccactat 6060 tcaaatctca ggcaagattc tcttgtcttc tcctcttctc caagcctctt aaacccctgc 6120 atcctccatc tcctatggta attgtggaca gttccactcc ctttagcaca caaaggtcca 6180 atcgggtgcg actccccccc ctcctgtggg ctacaggaac catttt 6226 //