ID JX501509; SV 1; circular; genomic DNA; STD; VRL; 2590 BP. XX AC JX501509; XX DT 31-OCT-2012 (Rel. 114, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Tomato leaf deformation virus isolate PA98-2-TM5 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf deformation virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2590 RX DOI; 10.1128/JVI.00234-13. RX PUBMED; 23468482. RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M., RA Gilbertson R.L.; RT "Characterization of a new world monopartite begomovirus causing leaf curl RT disease of tomato in ecuador and peru reveals a new direction in RT geminivirus evolution"; RL J. Virol. 87(10):5397-5413(2013). XX RN [2] RP 1-2590 RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F., RA Gilbertson R.L.; RT ; RL Submitted (18-AUG-2012) to the INSDC. RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA RL 95616, USA XX DR MD5; 5271d4040369491bddb6556fce7c8c43. DR EuropePMC; PMC3648196; 23468482. XX FH Key Location/Qualifiers FH FT source 1..2590 FT /organism="Tomato leaf deformation virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="PA98-2-TM5" FT /mol_type="genomic DNA" FT /country="Peru:Ica" FT /collection_date="Dec-1998" FT /db_xref="taxon:681518" FT gene 175..930 FT /gene="V1" FT CDS 175..930 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /db_xref="GOA:K4NZN9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4NZN9" FT /protein_id="AFV52592.1" FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY FT RKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQTLVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRSYFYDSITN" FT gene complement(508..825) FT /gene="C5" FT CDS complement(508..825) FT /codon_start=1 FT /gene="C5" FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4P288" FT /protein_id="AFV52597.1" FT /translation="MVLVFPSFLMVVDHMIVDLPKAPHQSLLVTGILTSCDLSIEPMHN FT LKTISKIVLHGGSTGLIVEHVEHLAKVHGSAIGSPVSDQPEHDAVSVVLQLDVLVHPYF FT T" FT gene complement(927..1325) FT /gene="C3" FT CDS complement(927..1325) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:K4NZQ4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4NZQ4" FT /protein_id="AFV52595.1" FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHDVEDIPSTTTRVY FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLIYLDNLGVISINN FT VIRSVRFATDKPYVNHVLENHSIKIKLY" FT gene complement(1072..1461) FT /gene="C2" FT CDS complement(1072..1461) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /db_xref="GOA:K4P024" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4P024" FT /protein_id="AFV52594.1" FT /translation="MQNSSSSTPPSIKPRHRIAKAKPIRRKRIDLDCGCSFFLHINCVN FT NGFTHRGEHHCASGREFRFYLGSTKSPLFQDTRRGGHTVHNDESIPHPNPVQPQPEEGA FT STTQSLLELPSLDDISSSFWDDIFK" FT gene complement(1412..2458) FT /gene="C1" FT CDS complement(1412..2458) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:K4PDA7" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4PDA7" FT /protein_id="AFV52593.1" FT /translation="MPLHKRFKISAKNYFLTYPQCNLTKEEALSQLQNLQTPTNKKYIK FT IARELHEDGQHHLHVLLQFQGKFQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVNSYV FT DKDGDTLQWGEFQVDGRSARGGCQTANDAAAEALNAETKEAALQIIREKLPEKYLFQFH FT NLNSNLDKIFTKAPEPWVPPFPISSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG FT CSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNGAEYNVIDDVSPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLDKEENAALRAWTLHNAKFIFLN FT SSLYQTEA" FT gene complement(2044..2301) FT /gene="C4" FT CDS complement(2044..2301) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4NZL8" FT /protein_id="AFV52596.1" FT /translation="MGNIISTCYSSSKANSSARITDSSTWYPQPGQHISIRTFRELNPA FT PTSTPTSTRTETLYSGENSRLTDEVLGEVAKQLTTLPQKP" XX SQ Sequence 2590 BP; 670 A; 533 C; 602 G; 785 T; 0 other; accggatggc cgcgcgattt ttttaccccc ctgttaagtt tgggaccaca cacatacgga 60 caaaaccttt tgtccaatca tggagcgtct ggcgagctta attattaatt cctttagact 120 gagtggtcta taaagaccca gacaaactgt aataattgat atctttaact caaaatgcct 180 aagcgcgatg ccccatggcg cttaatggcg gggacctcaa agattagccg tacttccaat 240 tattcaccca gaggaggtat gggccctaag ttcgacaaga atgcggcctg ggtaaacagg 300 cccatgtaca ggaagcccag agtataccgg gttttaagag gcccagatgt tcccaagggc 360 tgtgaggggc cctgtaaggt ccagtctttc gagcagcgtc acgatatctc ccatattggc 420 aaggtcatgt gtatatcaga tgttacccgt ggtaacggta ttacccaccg agtcggtaag 480 cgtttctgtg tgaagtccgt ctatatttta ggtaaaatat ggatggacga gaacatcaag 540 ttgaagaacc acactaacag cgtcatgttc tggttggtca gagaccggag accctatggc 600 actcccatgg actttggcca ggtgttcaac atgttcgaca atgagcccag tactgccacc 660 gtgaagaacg atcttcgaga tcgttttcag gttatgcata ggttctatgc taaggtcaca 720 ggaggtcagt atgccagtaa cgagcagact ctggtgaggc gcttttggaa ggtcaacaat 780 catgtggtct acaaccatca ggaagctggg aaatacgaga accatacgga gaacgcccta 840 ttattgtaca tggcatgtac tcatgcctct aaccctgtgt atgctacgtt gaaaatacgt 900 agctattttt atgattcaat aacaaattaa taaagtttaa tttttattga atgattctca 960 agtacatgat ttacatatgg tttatctgtt gcaaatcgaa cagatctaat tacattgtta 1020 attgaaataa ctcctaaatt atctaagtaa attaaaacta aatgtctaaa tctatttaaa 1080 tatgtcgtcc cagaagcttg aactgatgtc gtccagactt ggaagttcaa gaaggctttg 1140 tgtagttgaa gcgccttcct caggttgtgg ttgaaccgga tttggatgtg gtatactctc 1200 gtcgttgtgg acggtatgtc ctccacgtcg tgtatcttga aatagagggg atttggtact 1260 tcccagataa aaacggaatt ctctgcctga tgcacagtga tgttctcccc ggtgcgtgaa 1320 tccattatta acacagttaa tatgcagaaa gaatgagcag ccacagtcta ggtctatgcg 1380 tttccttcta atgggcttcg cctttgcaat cctatgcctc ggtttgatag agggaggagt 1440 tgaggaagat gaattttgca ttgtggagtg tccacgctct tagagctgca ttttcctctt 1500 tgtcaaggaa gtctttatag ctgtgtccct ctcctggatt gcagagcacg atagagggta 1560 tgccaccttt aatttgaatt ggctttccgt atttacagtt tgattgccaa tccttctggg 1620 cccctatcag ctctttccaa tgtttcatct ttaaatattg cggactgacg tcatcaatga 1680 cgttatattc cgctccattt gaataaactt tggaattaaa atccaggtgt ccactcagat 1740 aattatgtgg gcctaaggag cgagcccaca tggtcttacc tgtccttgaa catccctcta 1800 ttattatact gataggtctt tccggccgcg cagcggcacc cctaccaaaa taatcatcag 1860 cccattcttg catctcctcc gggacgttag tgaaggagga gattggaaac ggaggaaccc 1920 aaggttccgg agcctttgta aaaattttat ctaaattaga atttagatta tgaaattgaa 1980 ataaatattt ttcagggagt ttttccctga ttatttgtaa ggctgcctct ttggtttcag 2040 cgtttagggc ttctgcggca gcgtcgttag ctgtttggca acctccccta gcacttcgtc 2100 cgtcaacctg gaattctccc cactgtaaag tgtctccgtc cttgtcgacg taggagttga 2160 cgtcggagct ggatttagct ccctgaatgt tcggatggaa atgtgctgac ctggttgggg 2220 ataccaggtc gaagaatcgg ttattcgtgc actggaattt gccttggaac tggagtagca 2280 cgtggagatg atgttgccca tcctcgtgaa gttccctggc aattttaatg tatttcttat 2340 ttgtgggtgt ttgtaggttt tgcaattggg aaagtgcttc ttctttggtt aaattgcact 2400 ggggatatgt caagaaataa ttttttgcac ttattttaaa acgcttatgc agtggcattt 2460 ttgtaatata tggcttgtac cccgaatggt ttggcttcaa aacttatatg aattggggta 2520 aaggggtaca atatatagta ggagttccta agggatctag caacacgtgg cggccatccg 2580 ttataatatt 2590 //