ID JX501506; SV 1; circular; genomic DNA; STD; VRL; 2591 BP. XX AC JX501506; XX DT 31-OCT-2012 (Rel. 114, Created) DT 12-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Tomato leaf deformation virus isolate PA10-S9 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf deformation virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2591 RX DOI; 10.1128/JVI.00234-13. RX PUBMED; 23468482. RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Zerbini F.M., RA Gilbertson R.L.; RT "Characterization of a new world monopartite begomovirus causing leaf curl RT disease of tomato in ecuador and peru reveals a new direction in RT geminivirus evolution"; RL J. Virol. 87(10):5397-5413(2013). XX RN [2] RP 1-2591 RA Melgarejo T.A., Kon T., Rojas M.R., Paz-Carrasco L., Murilo-Zerbini F., RA Gilbertson R.L.; RT ; RL Submitted (18-AUG-2012) to the INSDC. RL Plant Pathology, University of California, Davis, 222 2nd Street, Davis, CA RL 95616, USA XX DR MD5; e8ccadd4a78c608338bde9d489cf4dde. DR EuropePMC; PMC3648196; 23468482. XX FH Key Location/Qualifiers FH FT source 1..2591 FT /organism="Tomato leaf deformation virus" FT /segment="DNA-A" FT /host="tomato" FT /isolate="PA10-S9" FT /mol_type="genomic DNA" FT /country="Peru:Ica" FT /collection_date="Jul-2010" FT /db_xref="taxon:681518" FT gene 176..931 FT /gene="V1" FT CDS 176..931 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /db_xref="GOA:K4P263" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4P263" FT /protein_id="AFV52574.1" FT /translation="MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMY FT RKPRIYRVLRGPDVPKGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRSYFYDSITN" FT gene complement(509..826) FT /gene="C5" FT CDS complement(509..826) FT /codon_start=1 FT /gene="C5" FT /product="C5" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:K4P267" FT /protein_id="AFV52579.1" FT /translation="MVLVFPSFLMVVDHMVVDLPKPPHQSLLVTGILTSRDLSIEPMHN FT LKTISKIVLHGGSTGLIVEHVKHLAKVHGRAIGSPVSDQPEHDAVSVVLQLDILVHPYF FT T" FT gene complement(928..1326) FT /gene="C3" FT CDS complement(928..1326) FT /codon_start=1 FT /gene="C3" FT /product="REn" FT /db_xref="GOA:K4P019" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4P019" FT /protein_id="AFV52577.1" FT /translation="MDSRTGENITVHQAENSVFIWEVPNPLYFKIHNVEDIQSTTTRVY FT HIQIRFNHNLRKALQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINN FT VIRSVRFATDKPYVNHVLENHSIKINLY" FT gene complement(1073..1462) FT /gene="C2" FT CDS complement(1073..1462) FT /codon_start=1 FT /gene="C2" FT /product="TrAP" FT /db_xref="GOA:K4NZM8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4NZM8" FT /protein_id="AFV52576.1" FT /translation="MQNSSSSTPPSIKPRHKIAKAKPIRRKRIDLDCGCSFFLHINCVN FT NGFTHRGEHHCASGREFRFYLGSTKSPVFQDTQRGGHTVHNDESIPHPNTIQPQPEEGA FT STTQSLLELPSLDDISSSFWDDIFK" FT gene complement(1413..2459) FT /gene="C1" FT CDS complement(1413..2459) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:K4NZN3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4NZN3" FT /protein_id="AFV52575.1" FT /translation="MPLPKRFQISAKNYFLTYPHCSLTKEEALSQFQNLNTPINKKYIK FT ICRELHENGEHHLHVLIQFEGKYNCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQIDGRSARGGCQTANDSYAKALNAGDLHAALAVLKEEQPKDYVLQHH FT NLRANLEKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEG FT CSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQ FT KDWQSNCKYGKPIQIKGGIPSIVLCNPGEGHSYKDFLEKEENAALRAWTLHNAKFIFLN FT SSLYQTEA" FT gene complement(2045..2302) FT /gene="C4" FT CDS complement(2045..2302) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4P293" FT /protein_id="AFV52578.1" FT /translation="MGNIISTCLSSSKGNTTARINDSSTWYPLPGQHISIRTYRELNPA FT PTSSPILTRTVTPLNGESSKSTAEVLEEAAKLLTTVTPKR" XX SQ Sequence 2591 BP; 664 A; 541 C; 599 G; 787 T; 0 other; accggatggc cgcgcgattt ttttaccccc cttgttaagt ttgggaccac acatatacgg 60 acaaaacctt ttgtccaatc atggagcgtc tgacgagctt aattattaat tcctttagac 120 tgagtggtct ataaagaccc cgacaatctg taataattga tatctttaac tcaaaatgcc 180 taagcgggat gccccatggc gcttaatggc ggggacctct aaaattagtc gtacatccaa 240 ttattcaccc agaggaggta tgggccctaa attcgacaag aatgcggcct gggttaacag 300 gcccatgtac aggaagccca gaatataccg ggttttaaga ggcccagatg ttcccaaggg 360 ctgtgagggg ccctgtaagg tccagtcttt cgagcagcgt cacgatatct cccatattgg 420 caaggtcatg tgtatatcag atgtcacccg tggtaacggt attacccatc gagtcggtaa 480 gcgtttctgt gtgaagtccg tctatatttt aggtaaaata tggatggacg agaatatcaa 540 gttgaagaac cacactaaca gcgtcatgtt ctggttggtc agagaccgga gaccctatag 600 ctctcccatg gactttggcc aggtgtttaa catgttcgac aatgagccca gtactgccac 660 cgtgaagaac gatcttcgag atcgttttca ggttatgcat aggttctatg ctaaggtcac 720 gggaggtcag tatgccagta acgagcaggc tctggtgagg cggttttgga aggtcaacaa 780 ccatgtggtc tacaaccatc aggaagctgg gaaatacgag aaccatacgg agaacgccct 840 attattgtac atggcatgta ctcatgcctc taaccctgtg tatgctacgt tgaaaatacg 900 tagctatttt tatgactcaa taacaaatta ataaagatta atttttattg aatgattctc 960 aagtacatga tttacatatg gtttatctgt tgcaaatcga acagatctaa ttacattgtt 1020 aattgaaata actcctaaat tatctaagta aaataaaact aaatgtctaa atctatttaa 1080 atatgtcgtc ccagaagctt gaactgatgt cgtccagact tggaagttca agaaggcttt 1140 gtgtagttga agcgccttcc tcaggttgtg gttgaatcgt atttggatgt ggtatactct 1200 cgtcgttgtg gactgtatgt cctccacgtt gtgtatcttg aaatacaggg gatttggtac 1260 ttcccagata aaaacggaat tctctgcctg atgcacagtg atgttctccc cggtgcgtga 1320 atccattatt aacacagtta atgtgcagga agaatgagca gccacagtct aggtctatgc 1380 gtttccttct gatgggcttt gccttggcaa tcttatgcct cggtttgata gagggaggag 1440 ttgaggaaga tgaattttgc attgtggagt gtccacgctc ttaaagctgc attctcctct 1500 ttctcaagga agtctttata gctgtgtccc tctcctggat tgcagagcac gatagagggt 1560 atgccacctt taatttgaat tggctttccg tatttacagt ttgattgcca atccttctgg 1620 gcccctatca gctctttcca atgtttcatc tttaaatatt gcggactgac gtcatcaatg 1680 acgttatagt ccgctccatt tgaataaact ttggaattaa aatccaggtg tccactcaga 1740 taattatgtg ggcctagtgc acgagcccac atagtcttcc ctgtccttga acatccctct 1800 attattatac tgataggtct ttccggccgc gcagcggcac ccctaccaaa ataatcatca 1860 gcccattctt gcatctcctc cgggacgtta gtgaaggagg agagtggaaa cggaggagac 1920 catggctccg gagcctttga gaaaatcttc tctaggttcg ctcttagatt atggtgctgc 1980 aacacataat ccttgggttg ttcttccttt aagacggcaa gtgctgcatg taaatcgcca 2040 gcgtttaacg ctttggcgta actgtcgtta gcagtttggc agcctcctct agcacttctg 2100 ccgtcgattt ggaactctcc ccattcaagg gtgtcaccgt ccttgtcaat ataggacttg 2160 acgtcggagc tggatttagc tccctgtatg ttcggatgga aatgtgctga cctggtaggg 2220 gataccaggt cgaagaatcg ttgattcttg cagttgtatt tcccttcgaa ctggataagc 2280 acgtggagat gatgttcccc attttcgtgc agttctctgc aaattttgat gtatttcttg 2340 ttaattgggg tgtttaggtt ttggaattgg gaaagtgctt cttcctttgt taacgagcag 2400 tgaggatatg taaggaaata atttttggca gatatttgaa agcgtttagg caggggcatt 2460 ttggtaattg ttggattggt taccaattga ggtctctcaa aaactctata tgaattggta 2520 gaacggtaac caatttatac tagaatcctc tttgctaaaa tctccacgtg gcggccatcc 2580 gttataatat t 2591 //