ID   JX461342; SV 1; linear; genomic RNA; STD; VRL; 1007 BP.
XX
AC   JX461342;
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DT   30-SEP-2012 (Rel. 114, Created)
DT   30-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Shallot yellow stripe virus isolate BJ2 polyprotein gene, partial cds.
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KW   .
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OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
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RN   [1]
RP   1-1007
RA   Wang Y., Tian B.;
RT   ;
RL   Submitted (15-JUL-2012) to the INSDC.
RL   Beijing Vegetable Research Center, Beijing Academy of Agriculture and
RL   Forestry Sciences, Banjin, Haidian District, Beijing, Beijing 100097, China
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DR   MD5; 5f28e3f6f438c76db5cb5886a39d1bee.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1007
FT                   /organism="Shallot yellow stripe virus"
FT                   /host="Allium fistulosum (Welsh onion)"
FT                   /isolate="BJ2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..812
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /db_xref="GOA:J9Z220"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:J9Z220"
FT                   /protein_id="AFS49969.1"
FT                   /translation="RIPTPSYVSYQASETEDAANVNTDKQVGKNKDKDRDVDVGTSGEF
FT                   SVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQVDLYNTRATHAQFKTWYDAVKLEY
FT                   ELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIM
FT                   AHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQ
FT                   MKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHTLLGLRM"
FT   mat_peptide     <1..35
FT                   /product="nuclear inclusion B"
FT   mat_peptide     36..809
FT                   /product="coat protein"
XX
SQ   Sequence 1007 BP; 342 A; 184 C; 234 G; 247 T; 0 other;
     atcgaatacc aacaccaagt tatgtgtcat accaagcatc ggaaacagaa gatgctgcta        60
     atgttaacac tgacaagcaa gttggaaaga ataaagacaa ggatagggat gttgatgttg       120
     gcacatcagg cgagttttca gtaccgaagg tgaagatgtt atcagacaaa atgcggttac       180
     cacgagttgg gaagaaggtg atactcaatg gcaaacatct tctttcgtac aagcctgatc       240
     aggttgactt atacaacaca agggcaacac atgcacaatt taagacatgg tatgatgcag       300
     tcaaactcga atacgaatta acagacgagc aaatgaaaat agttatgaat gggttaatgg       360
     tgtggtgcat tgaaaatgga acatcacaaa acttgacggg ggtttggacg atgatggatg       420
     gcgataacca gatggaatac ccactcagcc ccattattga caacgcaaaa cccactttca       480
     gacaaataat ggcacatttc agtgacgcag ctgaagcgta cattgaatat agaaatgcca       540
     cagaaaaata catgccccgg tatggacttc agcgaaactt aagagaatac agcttagcac       600
     gttacgcgtt cgacttttat gagatgaatt caaagacgcc gatccgcgcg aaggaagctc       660
     acatgcagat gaaagcagca gcggttagag gggtagctaa ccgtatgttt ggcttggacg       720
     gtaacataag caccgatgat gagaacacag aacgacatac agcagctgat gtgaataagg       780
     atcatcacac actgcttggt cttcgtatgt aataaacata tatatattta atatatagtg       840
     tcgtgcatta tctttcgtta tatttgaata tgagcaaaca tagtgtggct gaaccaccgt       900
     ttgtggcata gtatatgata taacttcgct agcattattt gcaccatgaa acttagtgtg       960
     gtcacaccac gaaaagagtt gagtgttgta cgttttgtta gggagac                    1007
//