ID   JX286706; SV 1; linear; genomic RNA; STD; VRL; 699 BP.
XX
AC   JX286706;
XX
DT   31-OCT-2012 (Rel. 114, Created)
DT   28-NOV-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus P1 gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-699
RA   Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA   Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA   Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Mumford R.,
RA   Boonham N.;
RT   "Use of next generation sequencing for the identification and
RT   characterisation of Maize chlorotic mottle virus and Sugarcane mosaic virus
RT   causing maize lethal necrosis in Kenya";
RL   Plant Pathol. 0:0(2012).
XX
RN   [2]
RP   1-699
RA   Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA   Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA   Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Boonham N.,
RA   Mumford R.;
RT   ;
RL   Submitted (06-JUL-2012) to the INSDC.
RL   Plant Protection, Food and Environment Research Agency, Sand Hutton, York
RL   YO411LZ, UK
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DR   MD5; eed7700b284ed060a32fd79e20e647d6.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Newbler v. 2.6
CC   Sequencing Technology :: 454
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..699
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Zea mays"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya"
FT                   /collection_date="Feb-2012"
FT                   /db_xref="taxon:12224"
FT   CDS             1..>699
FT                   /codon_start=1
FT                   /product="P1"
FT                   /db_xref="GOA:K4P7N4"
FT                   /db_xref="InterPro:IPR002540"
FT                   /db_xref="UniProtKB/TrEMBL:K4P7N4"
FT                   /protein_id="AFV60458.1"
FT                   /translation="MAGLWTHVSYKWQPNVNNDRDVRKVMEMFAAKHQHYTEEQRLAHN
FT                   SKLLRKAYVVDVEPVKPAPEPIRRKVWVEKFDHNPTEDLVYPRLVTVKKAAEMKPVNTS
FT                   INKLIRDVLDISKGSSLKLELIGKRQKCRTQLAIKKYNNKDYLHCRTRHEDNMFKRRDV
FT                   AIGIEWIPTIEAIARCYSTVNKQEMQSLYKGSSGLTFMQNDELFIVRGRMNGELVNSLE
FT                   ENKNVLDIDHY"
XX
SQ   Sequence 699 BP; 246 A; 137 C; 171 G; 145 T; 0 other;
     atggcgggat tgtggactca cgtgtcttac aagtggcagc caaatgtcaa caatgaccgt        60
     gatgtaagaa aggtaatgga aatgtttgca gcaaaacatc aacattatac agaggagcag       120
     cgacttgcac ataacagcaa gttgctaagg aaagcgtatg ttgtggacgt cgaaccagtg       180
     aagccagcac cggagcctat aaggcgtaaa gtgtgggtgg aaaaattcga ccacaaccca       240
     accgaagacc tggtgtatcc gcgccttgtt acggttaaaa aggcagcaga aatgaagccc       300
     gtgaacacct ctataaataa acttataagg gatgttctgg acatatcaaa agggagcagc       360
     cttaaacttg agctaattgg taaacgccag aagtgcagaa cacaactagc tattaagaaa       420
     tacaacaata aggactacct ccattgcagg acacgtcatg aagacaacat gttcaagagg       480
     agggacgtgg caatcggcat tgaatggatc ccaaccattg aagcgattgc tcgatgctac       540
     agcacagtaa acaaacagga gatgcaaagt ctctacaaag gcagtagtgg cttaacattc       600
     atgcaaaatg atgaattatt cattgttaga ggtagaatga atggcgagtt agttaatagc       660
     ctggaagaga acaagaacgt gctcgacatc gatcactac                              699
//