ID   JX259405; SV 1; circular; genomic RNA; STD; VRL; 302 BP.
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AC   JX259405;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   31-MAY-2016 (Rel. 129, Last updated, Version 2)
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DE   Hop stunt viroid isolate 23-1.21-HSVd, complete sequence.
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KW   .
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OS   Hop stunt viroid
OC   Viruses; Riboviria; Pospiviroidae; Hostuviroid.
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RN   [1]
RP   1-302
RX   DOI; 10.1007/s10658-013-0231-6.
RX   AGRICOLA; IND500683651.
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T.L., Kyriakopoulou P.E., Vidalakis G.;
RT   "Identification and characterization of known and novel viroid variants in
RT   the Greek national citrus germplasm collection: threats to the industry";
RL   Eur. J. Plant Pathol. 137(1):17-27(2013).
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RN   [2]
RP   1-302
RA   Wang J., Boubourakas I.N., Voloudakis A.E., Agorastou T., Magripis G.,
RA   Rucker T., Kyriakopoulou P.E., Vidalakis G.;
RT   ;
RL   Submitted (25-JUN-2012) to the INSDC.
RL   Plant Pathology and Microbiology, University of California, Riverside, 900
RL   University Ave., Riverside, CA 92521, USA
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DR   MD5; b4fddc86a4d746c27975b8ef73c2c906.
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FH   Key             Location/Qualifiers
FH
FT   source          1..302
FT                   /organism="Hop stunt viroid"
FT                   /host="Citrus sinensis (Navel Nucelar PO 25 navel orange)"
FT                   /isolate="23-1.21-HSVd"
FT                   /mol_type="genomic RNA"
FT                   /country="Greece:Poros Arboricultural Station"
FT                   /PCR_primers="fwd_name: HSVd-For78-102, fwd_seq:
FT                   cgcccggggcaactcttctcagaatcc, rev_name: HSVd-Rev85-60,
FT                   rev_seq: gccccggggctcctttctcaggtaag"
FT                   /PCR_primers="fwd_name: HSVd-For283-302, fwd_seq:
FT                   ccggatcctctcttgagcccct, rev_name: HSVd-Rev288-271, rev_seq:
FT                   ctggatccgcggcagaggct"
FT                   /note="CV-IIa"
FT                   /db_xref="taxon:12893"
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SQ   Sequence 302 BP; 61 A; 86 C; 82 G; 73 T; 0 other;
     ctggggaatt ctcgagttgc cgcatgggca agcaaagaaa aaacaaggca gggaggagac        60
     ttacctgaga aaggagcccc ggggcaactc ttctcagaat ccagcgagag gcgtaggaga       120
     gagggccgcg gtgctctgga gtagaggctt cttgcttcga aacaccatcg atcgtccctt       180
     cttcttttac cttctcctgg ctcttcgagt gagacgcgac cggtggcatc acctctcggt       240
     tcgtcttcca acctgctttt tgtctatctg agcctctgcc gcggatcctc tcttgatccc       300
     ct                                                                      302
//