ID JX025359; SV 1; circular; genomic DNA; STD; VRL; 2779 BP. XX AC JX025359; XX DT 29-JUL-2012 (Rel. 113, Created) DT 29-JAN-2013 (Rel. 115, Last updated, Version 3) XX DE Jatropha mosaic Nigerian virus isolate 3 segment DNA-A, complete sequence. XX KW . XX OS Jatropha mosaic Nigeria virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2779 RX DOI; 10.1007/s00705-012-1512-7. RX PUBMED; 23074041. RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT "Molecular identification of a new begomovirus associated with mosaic RT disease of Jatropha curcas L. in Nigeria"; RL Arch. Virol. 158(2):511-514(2013). XX RN [2] RP 1-2779 RA Kashina B.D., Alegbejo M.D., Banwo O.O., Nielsen S.L., Nicolaisen M.; RT ; RL Submitted (02-MAY-2012) to the INSDC. RL Department of Agroecology, Aarhus University, Forsogsvej 1, Slagelse 4200, RL Denmark XX DR MD5; 87040cb432517d65cda20e0d4827c72d. XX FH Key Location/Qualifiers FH FT source 1..2779 FT /organism="Jatropha mosaic Nigeria virus" FT /segment="DNA-A" FT /host="Jatropha curcas L." FT /isolate="3" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /collection_date="2011" FT /db_xref="taxon:1213406" FT CDS 138..479 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:I7BBV5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I7BBV5" FT /protein_id="AFO38438.1" FT /translation="MWDPLRNEFPETLHGFRCMLAVKFLQALVDSYSPDTKGYEYIRDL FT ICILRSRHYNEANIRYGLLVSRIQCTPASQLRESSCVTCSCEHCPRHFKKTGLEKQAHE FT QEAQVLPDI" FT CDS 301..1074 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:I7B343" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I7B343" FT /protein_id="AFO38439.1" FT /translation="MKRTYDMAFSSPVSNVRRLLNFGSPLALPAPASTAPGTSRRRAWR FT NRPMNRKPRFYRTFRSLDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFYLVRDRRPYGTSPMDFGQVFNMFDNE FT PSTATVKNDLRDRFQVLRKFYATVTGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYLACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1071..1475) FT /codon_start=1 FT /product="C3" FT /note="replication enhancer" FT /db_xref="GOA:I7A6R5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I7A6R5" FT /protein_id="AFO38442.1" FT /translation="MDSRTGEYITAPQAGNGVFIWEINNPLYFTTTEQSVRPFNTNHDI FT ITLQIRFNHNLRKELGLHKCYLNFRVWTTSRTRSGTFFRVFKYQVLKYLDMLGVISINN FT VIRSVDHVLHNVIRTCIEVQEFHDIKFKFY" FT CDS complement(1216..1623) FT /codon_start=1 FT /product="C2" FT /note="transcriptional activator protein" FT /db_xref="GOA:I7BFC2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I7BFC2" FT /protein_id="AFO38441.1" FT /translation="MQHSSPSVSHSTPVPIKVKHRLAKTKRIRRRRIDLECGCSYYLHL FT NCANNGFTHRGVHHCSSSREWRVYLGDKQSPIFHDHGAERAAIQHQPRHHHPPDPVQPQ FT PPEGTGSSQVLSELPSLDDFTDSVWDFLQSI" FT CDS complement(1532..2614) FT /codon_start=1 FT /product="C1" FT /note="replication-associated protein" FT /db_xref="GOA:I7AHJ5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I7AHJ5" FT /protein_id="AFO38440.1" FT /translation="MPHAPKKFQVNCKNLFLTYPQCSLSKEETLSQLTNLSLPSNPKFI FT RICRELHQNGEPHLHVLVQFEGKVRLTNCRLFDLVSPTRSAHFHPNIQGAKSSSDVKAY FT LEKDGDVLDWGQFQIDGRSARGGKQSSNDAYAQALNAGSKSEALRIIKELVPKDYVLQF FT HNLNSNLERIFTPPVEIYKSPFLSSSFDQVPDELEEWVADNVKAAAARPWRPKSIVIEG FT DSRTGKTMWARSLGPHNYLCGHLDISPKVYSNDAWYNIIDDVDPHYLKHFKEFMGAQRD FT WQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNSALKRWTLQNATFITLSEP FT LYSGTNQSQAPTREDQENTS" FT CDS complement(2197..2454) FT /codon_start=1 FT /product="C4" FT /note="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I7BBV8" FT /protein_id="AFO38443.1" FT /translation="MGNLICMCSCNSKAKSDSRIADCSTWYPQPGQHISIRTFRELSLA FT PMSRHILRRTGTSSTGANSRSMDDQQEEANNHQTMLTHRR" XX SQ Sequence 2779 BP; 702 A; 600 C; 670 G; 807 T; 0 other; accggatggc cgcgcgatac ccgctcaacg tggtccccac gtgacaagac atgtcggcca 60 ctcatgatgc gtctgttgag gttatatatg tgtggtccca gtatataaac ttcgtcacga 120 agttagtgag tcacacaatg tgggaccctt taagaaatga atttccagaa acccttcatg 180 ggtttcgttg tatgttggct gtgaagtttt tgcaggccct tgtggatagt tacagcccgg 240 atacgaaggg atacgaatac atacgggatc ttatatgtat tctacgctcg cgacattaca 300 atgaagcgaa catacgatat ggccttctcg tctcccgtat ccaatgtacg ccggcttctc 360 aacttcggga gtcctcttgc gttacctgct cctgcgagca ctgcccccgg cacttcaaga 420 agacgggcct ggagaaacag gcccatgaac aggaagccca ggttctaccg gacatttagg 480 agcctagacg tccctcgagg atgtgaaggc ccatgtaagg tccagtccta tgagcaacgc 540 gatgatgtga aacataccgg tgttgttcgg tgtgtgagtg atgttacccg tggttctggt 600 attacccatc gggtaggtaa gcgtttctgc atcaagtcca tctatattct cgggaagatt 660 tggatggatg agaatatcaa gaagcagaac cacacgaacc aggtgatgtt ctatttggtt 720 cgtgatcgta gaccctatgg gacgagtcca atggactttg gacaagtgtt taacatgttt 780 gacaacgagc cgtcaacggc cactgttaag aacgatctgc gagatcgctt ccaggtgcta 840 cggaagttct atgctacagt cactggtggt ccctctggaa tgaaggaaca ggctttagtt 900 aagaggttct ttaggattaa caatcatgtt gtgtacaacc atcaggaaca ggcgaagtat 960 gagaatcata ctgagaacgc cttgttattg tatttggcat gtacgcatgc ctcaaatccc 1020 gtgtatgcaa cgctgaagat acgcatctat ttttacgatg ccgtcacgaa ttaataaaat 1080 ttaaatttta tatcatgaaa ttcctgaact tcgatacaag tcctaattac attatgtaat 1140 acatgatcga cagatctaat aacattatta atggaaatta cacctaacat gtctaagtat 1200 ttaaggactt ggtatttaaa tactctgaag aaagtcccag accgagtccg tgaagtcgtc 1260 cagactcgga agttcagata acacttgtga agacccagtt ccttccggag gttgtggttg 1320 aaccggatct ggagggtgat gatgtcgtgg ttggtgttga atggccgcac gctctgctcc 1380 gtggtcgtga aatatagggg attgtttatc tcccagataa acacgccatt ccctgcttga 1440 ggagcagtga tgtactcccc ggtgcgtgaa tccattgtta gcacagttga gatgtagata 1500 gtatgagcag ccgcactcga gatcgatgcg tctacgacgt attctcttgg tcttcgcgag 1560 tcggtgcttg actttgattg gtaccggagt agagtggctc actgagggtg atgaatgttg 1620 cattttgtag tgtccaccgc ttcaaagctg agttcttctc ttcctctaag aactctttat 1680 aggacgatgt cggaccagga ttgcagagga agattgtcgg gatcccgcct ttaatttgaa 1740 ttggcttgcc gtatttcgtg ttgctttgcc aatcacgttg ggcccccatg aactctttga 1800 aatgttttag atagtgcgga tccacgtcat cgattatgtt gtaccaggcg tcatttgaat 1860 agaccttggg actaatgtcc aaatgaccac ataagtaatt atgtggaccc aggcttcgtg 1920 cccacattgt tttgcccgta cgactatcgc cctcgataac aatactttta ggtctccatg 1980 gccgcgcagc ggctgccttc acattgtctg ctacccactc ctcaagttcg tccggaactt 2040 gatcaaatga agaggacaga aaaggagatt tataaatctc tacgggagga gtgaatatcc 2100 tctctaaatt ggaattaaga ttatgaaatt gtaatacata atcctttggg actaattctt 2160 taattatccg tagagcttca gacttactgc ctgcgttcag cgcctgtgcg taagcatcgt 2220 ttgatgattg tttgcctcct cttgctgatc gtccatcgat ctggaattgg ccccagtcga 2280 ggacgtcccc gtccttctca agatatgcct tgacatcgga gctagactta gctccctgaa 2340 tgttcggatg gaaatgtgct gacctggttg gggataccaa gtcgaacaat ctgcaattcg 2400 tgagtcggac tttgccttcg aattgcacga gcacatgcag atgaggttcc ccattttgat 2460 gcagttctct gcagattctt atgaatttgg ggtttgaagg taatgacaga ttggttaatt 2520 gcgaaagagt ttcctctttc gataacgagc attgcggata tgtaagaaat aagttcttac 2580 aattaacttg gaattttttt ggagcgtgag gcatgttgac tttgattggg tacccttgac 2640 cgctctcgtc taattctcgg gtgcaattat attggtaccc atatataggg ggtaccaaat 2700 ggcacgctgg taatttgtac aactttagtt ttgaaattca aagttcgaaa ttcccactag 2760 cggccatccg tataatatt 2779 //