ID JQ975096; SV 1; linear; genomic RNA; STD; VRL; 2765 BP. XX AC JQ975096; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M121 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; df69372d9a863072ba35c9b61e1b2399. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M121" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="03-Jun-2011" FT /db_xref="taxon:53954" FT CDS <1..>2765 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K0IIM9" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0IIM9" FT /protein_id="AFU50467.1" FT /translation="SARSLFIDAGLYAVALSLVYCALQIIRKIFKRLSKMLHDDDTTRL FT AQFDEMRILARGDGKLIAMIDKMEEEQSESLIHHAQGKTDNLYVKVLAWISLLVGCFNV FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQNEQEDMKRLLDTRDNFIDFVYQHDEH FT DGCVDRESLDAWYTRICYQERVTEHPLKCGQELTLTRLNSTDIAESITRTSHNEFTVVG FT GVGTGKSTKLPGALSVYGPVLILVPSRELSVNLAASIEGVTQKVPSVYMHNCSIRGTSN FT ITIMTYGYALIFFYHNRIEMQKYKFVQMDECHEFSEHMICFYAWWKENSQYTKLIKTTA FT TPPGARIHNGFVDTNHEVIVQEIPSMTVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHSFYQIIVTTTVLQNGVNL FT SPDGAIDFGVTYEAAYDTDHRVLTVRRRNINPGELIQRVGRVGRDKPGTFIQVGKRLDR FT EQPPNACTTTNAILISFSMELAPYVGPHLIDDINWVTREQIKTAMLFSAPLLFMVHYVR FT RDGKMLEGFYHQFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLAGEIEHDEPLPQL FT PIPFYSNDFAVPFYIALGHITAEAVKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL FT TVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQEEASYHWVGSEKDIID FT DWGAAYAKKNAGKKKPSDWDDGKQQWDSREGTYTNVFKTLYDLDPTKFKYV" FT mat_peptide <1..243 FT /product="P3 protease" FT mat_peptide 244..390 FT /product="6K1 protein" FT mat_peptide 391..2358 FT /product="CI protein" FT mat_peptide 2359..2502 FT /product="6K2 protein" FT mat_peptide 2503..>2765 FT /product="Vpg protein" XX SQ Sequence 2765 BP; 864 A; 538 C; 628 G; 735 T; 0 other; agcgctcgtt cgttattcat agatgctggc ctctacgccg tggctttgtc gttggtctat 60 tgcgctctcc agatcattag gaagatattc aaacggttga gtaagatgct acacgatgat 120 gacacaacaa ggttagcgca atttgacgag atgagaattt tggctagggg tgatggaaaa 180 ttaattgcaa tgatagacaa aatggaagag gaacagtctg agagtttgat tcatcatgca 240 caaggaaaaa cggacaattt atatgtaaaa gttcttgctt ggatttcgtt actagttggt 300 tgctttaatg ttggtttagc taatgacata tattttgcag tgaccaaata tcgcacatta 360 ttggacatag caacaactag ctcaccggaa tcgctcgttt tccacgctca gaacgaacaa 420 gaagatatga aacgactatt ggacacacga gataatttca ttgatttcgt ttaccagcat 480 gatgaacacg acggttgtgt tgatcgcgag agtttagacg catggtacac acgaatttgc 540 taccaggaac gtgttaccga acacccactc aagtgcgggc aggaacttac acttacgcga 600 ctcaacagta ccgatattgc agagagtatc acacgaacat ctcacaatga gtttacagtc 660 gttggaggag ttggaacagg aaaaagcacg aaattaccag gagccttgtc agtttatgga 720 ccagtgctta ttcttgtacc atcacgtgaa ctctcagtga atcttgcagc cagcattgaa 780 ggagtcacac agaaggtacc tagcgtctac atgcataatt gttcaattcg tggaacgagc 840 aacataacaa tcatgacata cggatatgcg ctgatctttt tctaccataa taggattgaa 900 atgcaaaaat acaaattcgt tcaaatggac gagtgtcacg aattcagcga acacatgata 960 tgcttctatg cttggtggaa agagaactca cagtatacga aactcataaa gactacagct 1020 acaccaccag gagcacgcat tcacaacgga tttgttgaca ctaaccacga agttattgta 1080 caggagattc caagcatgac agtggatgaa ttctgtcgaa aatcaataga tcgtcatgtt 1140 gatggattac aagcgcggtt tccaaatggt ggacgaattc tgatcttcgc tccttcacga 1200 aaagattgtg agtatataaa agcttcactc atcacgatgg gaagaactaa aatctgggct 1260 gtttatagga aaagcacatt agctggtgaa aagttgattg aagagcttaa caacgatcac 1320 tcattttatc agattattgt tacaacaaca gtcttgcaaa atggagtgaa tttatcacca 1380 gatggagcta ttgactttgg tgttacttat gaagcagctt atgatacaga tcatcgtgtt 1440 ctcacggtgc ggcgaagaaa cataaatcca ggagaactaa ttcaacgagt tggtcgtgtt 1500 ggacgagaca aaccaggaac gtttattcaa gttggtaagc ggttagatcg tgaacaacca 1560 ccaaatgcct gcacaacaac aaatgcgatt ctgatatcat tttcaatgga actagcacca 1620 tacgtcggac cacatttgat tgatgacatt aattgggtca caagggagca gatcaaaacc 1680 gcaatgctat ttagcgcacc tcttttgttc atggtccact atgttcgtag agatgggaaa 1740 atgttggaag ggttttatca tcagtttaaa gggttattat tgcgaacaag tgaggtgata 1800 ttgtgtcacg atttaatttc cgaacctcaa cggcacagtt atcgaacatt aagagattat 1860 caacttgctg gagaaataga acatgatgaa cctctgccac agcttccaat cccattttac 1920 tcaaatgact tcgctgttcc attctacata gctcttgggc atattacagc ggaggcggtt 1980 aaacctaggt cttttacggt tcggctacca gtccccaatg ttaagaaggc agttttgcgg 2040 ttgtcaacat ctgaagcaca agttgaccga actattggga tattgcaagt tcgactccaa 2100 caaattcgtg aacgattgga caagtttaat acgttgcgag ctgaaacagc gggcctacgg 2160 ttaactaatt tatttaacac gtgttataca agagctacaa gccaaagcga gaagtcactt 2220 caggcatcat tgatacttgg aacagaactt ttgtcatcgc tcgagattgc tcgcgctgag 2280 aaaaatgaca aagagcttga aaagttacta gctaataacc ctatgctcag cgaatgtttg 2340 atttatcatg gcgggcagga agctttcttg gagcaatatt tgttcccaac atttaagcat 2400 ccgattaagg cttatcttgt tgccattgcc tgtctcaccg ttggagtggg ttgtctcggg 2460 tactattacc tcaaacgcag agagacactt attatgcatg cagggaaaaa gcgccggaca 2520 cacgctcgtg aagatcgtta caagagaaca ggacttatgg gacaagaaga agctagctac 2580 cactgggttg ggagtgagaa ggatatcatt gatgactggg gagcggctta tgctaagaaa 2640 aatgctggga agaagaagcc gtcagattgg gatgatggaa aacagcaatg ggactcacgt 2700 gaaggcacct acacgaatgt gtttaagaca ttatacgacc tggatccaac taagttcaaa 2760 tatgt 2765 //