ID JQ975088; SV 1; linear; genomic RNA; STD; VRL; 2765 BP. XX AC JQ975088; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M115 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2765 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; ec24481b90eb0514355bc7f97e5cb2ba. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M115" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="03-Jun-2011" FT /db_xref="taxon:53954" FT CDS <1..>2765 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K0I2C3" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K0I2C3" FT /protein_id="AFU50459.1" FT /translation="SARSLFIDAGLYAVALSLVYCALQIIRKIFKRLSKMLHDDDTTRL FT AQYDEMRIMAKGNKQLIAMIDKMEDEQSESLVHHAQGKADNMYVKILAWISLFVGCFNV FT GLANDIYFAVTKYRTLLDIATTSSPESLVFHAQDEQEDMKRLLDTRDNFIDFVYQHDEH FT DGSVDRESLDAWYTRICYQERVTEHPLKCGQELTLTRLNSTDIAESITRTSHNEFTVIG FT GVGTGKSTKLPGALSIYGPVLILVPSRELSVNLAASIEGVTQKVPSVYMHNCSIRGTSN FT ITIMTYGYALIFFYHNRIEMQKYKFIQMDECHEFSEHMICFYAWWKENSQYTKLVKTTA FT TPPGARIHNGFVDTNHEVIVQEIPSMTVDEFCRKSIDRHVDGLQARFPNGGRILIFAPS FT RKDCEYIKASLITMGRTKIWAVYRKSTLAGEKLIEELNNDHTFYQIIVTTTVLQNGVNL FT SPDGAIDFGITYEAAYDTDHRILTVRRRNINPGELIQRVGRIGRDKPGTFIQVGKRLDR FT EQPPNACTTTNAILISFAMELAPYVGPHLIEDINWVTREQIKTAMLFSAPLLFMIHYIR FT RDGKMLEGFYHQFKGLLLRTSEVILCHDLISEPQRHSYRTLRDYQLSGEIEHDEPLPAI FT PIPFYSNDFAVPFYIALGHITAEAIKPRSFTVRLPVPNVKKAVLRLSTSEAQVDRTIGI FT LQVRLQQIRERLDKFNTLRAETAGLRLTNLFNTCYTRATSQSEKSLQASLILGTELLSS FT LEIARAEKNDKELEKLLANNPMLSECLIYHGGQEAFLEQYLFPTFKHPIKAYLVAIACL FT TVGVGCLGYYYLKRRETLIMHAGKKRRTHAREDRYKRTGLMGQDESSYHWVGSEKDIID FT DWGAAYAKKNAGKKKPSDWDDGEQQWDSREGTYTNVFKTLYDLDPTKFKYV" FT mat_peptide <1..243 FT /product="P3 protease" FT mat_peptide 244..390 FT /product="6K1 protein" FT mat_peptide 391..2358 FT /product="CI protein" FT mat_peptide 2359..2502 FT /product="6K2 protein" FT mat_peptide 2503..>2765 FT /product="Vpg protein" XX SQ Sequence 2765 BP; 858 A; 560 C; 621 G; 726 T; 0 other; agcgctcgtt cgttattcat agatgctggc ctttacgccg tggctttatc attggtttat 60 tgcgctctcc agatcattag gaagattttt aaaagattaa gcaaaatgct ccatgatgac 120 gacaccacac gactagcgca gtatgacgaa atgaggatta tggctaaagg taacaaacag 180 ctcatcgcaa tgatcgataa gatggaagat gaacaatcag aaagtttagt gcatcacgca 240 caaggtaaag cggacaacat gtatgttaag attcttgcat ggatatctct cttcgttggc 300 tgctttaacg tgggattagc gaacgacata tattttgcgg tcaccaaata tcgcacactc 360 ttggacatcg ctacaacaag ttcacccgag tcattggtat ttcacgcaca agatgagcaa 420 gaagatatga aacggttgct ggacactcgt gataatttta tcgactttgt ctaccagcat 480 gatgaacatg atgggagtgt tgatagagag agtcttgacg cctggtatac gagaatttgt 540 tatcaagaga gggttactga acacccgctc aagtgtggtc aagagctcac tctcacaaga 600 ctcaatagca cggacatcgc agaaagcata acacgcacgt ctcataacga gttcactgtt 660 attggtggtg ttggaacagg gaagagtacg aaactccctg gtgcgttatc catttatggt 720 ccagtgttga ttctagtgcc ctcgcgagag ctatcggtta acctcgcagc tagcattgaa 780 ggagttacac agaaagtccc aagtgtttac atgcacaatt gctcgatccg aggcacaagc 840 aacattacta tcatgacata tggttatgcg ctgattttct tttatcataa tcgaattgaa 900 atgcaaaagt ataagtttat ccaaatggat gagtgtcatg aattcagcga acacatgatc 960 tgtttttatg cctggtggaa agaaaactcg caatacacta aactagtgaa gacgacagca 1020 acaccaccag gagcacgcat tcataatgga ttcgttgata ccaatcatga ggtgatagtg 1080 caagagattc caagtatgac agttgatgaa ttctgccgta aatctatcga tcgacacgtt 1140 gatggcttac aagctcggtt tccaaacggt ggacgtatac tcatttttgc cccatcacga 1200 aaggattgcg aatatattaa ggcctcactt attacgatgg ggagaacaaa aatttgggct 1260 gtataccgga aaagcacttt ggctggcgaa aagttgattg aagagcttaa taatgaccac 1320 actttttatc agatcattgt caccacaaca gttttgcaga atggagtaaa cttatcacca 1380 gatggagcaa ttgattttgg tatcacttat gaggccgcat atgacacaga tcatagaatc 1440 ctcactgttc gacggaggaa tatcaaccca ggcgagttaa tacaaagagt tggtcgtata 1500 gggcgggata aaccaggaac gtttattcaa gttggcaaga gattagatcg agaacaacca 1560 cccaatgctt gcacaacaac caacgctatt ttaatttcgt ttgctatgga gctagcccca 1620 tatgttggac cacatcttat tgaagacata aactgggtta cgagagagca aataaaaacg 1680 gctatgttat ttagcgcacc tctgctattt atgatacact acattcgaag ggatggaaag 1740 atgttggaag ggttttacca ccagttcaaa ggacttctac tacgaacaag cgaggtaata 1800 ctttgccatg atttaatttc tgaaccacag cggcacagtt accgaacttt acgagattac 1860 caactttctg gtgaaataga acacgatgag cccttgccgg ctattcctat tccattctac 1920 tcgaacgact ttgcggtgcc attttatatc gctcttggtc acataacagc agaggcgatt 1980 aaaccacgat ctttcacagt gagactccct gtacctaacg taaagaaagc agtattaaga 2040 ttgtcaactt cagaggcgca agtggataga actattggaa tcttgcaagt tcgattacaa 2100 caaattcgag aacgccttga taaattcaac actttgcgcg ctgaaacggc tgggttacgg 2160 ttgacaaacc tatttaacac atgttatacg agggcaacca gccagagcga aaagtcactt 2220 caagcctcgc tcattttagg tacagaactc ctctcatcct tggagatcgc tcgtgctgag 2280 aaaaatgata aagagctgga aaaattattg gctaacaatc ccatgcttag tgagtgtctc 2340 atttaccacg gaggacagga agctttcttg gagcaatatt tatttccaac ttttaaacac 2400 ccaattaaag cttacttagt ggcgattgct tgcctaacgg ttggcgttgg ctgtctcggt 2460 tattactact taaagagaag agaaacctta atcatgcatg ccgggaagaa gcgtcgaact 2520 catgctcgtg aagaccggta taagcgaact ggtttaatgg ggcaagatga atcgagctat 2580 cactgggttg gaagtgaaaa agacattatc gacgactggg gagctgccta cgccaagaag 2640 aatgccggaa agaaaaagcc ctcagattgg gatgatggag aacagcagtg ggattcgcgt 2700 gaggggacat atacgaatgt tttcaaaaca ctatatgatt tggacccaac gaaatttaag 2760 tatgt 2765 //