ID JQ975074; SV 1; linear; genomic RNA; STD; VRL; 2280 BP. XX AC JQ975074; XX DT 08-OCT-2012 (Rel. 114, Created) DT 08-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Sugarcane streak mosaic virus isolate M61 polyprotein gene, partial cds. XX KW . XX OS Sugarcane streak mosaic virus OC Viruses; Riboviria; Potyviridae; Poacevirus. XX RN [1] RP 1-2280 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT "Genetic variability and population structure of Sugarcane streak mosaic RT virus (SCSMV)"; RL Unpublished. XX RN [2] RP 1-2280 RA He Z., Li W., Ma W., Ge B., Huang Y., Wang X., Li S.; RT ; RL Submitted (20-APR-2012) to the INSDC. RL State Key Laboratory for Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; 07e8ba733ea19c1019a6b3e805a561ad. XX FH Key Location/Qualifiers FH FT source 1..2280 FT /organism="Sugarcane streak mosaic virus" FT /host="sugarcane" FT /isolate="M61" FT /mol_type="genomic RNA" FT /country="China" FT /collected_by="Wenfeng Li and Zhen He" FT /collection_date="22-Nov-2008" FT /db_xref="taxon:53954" FT 5'UTR 1..199 FT CDS 200..>2280 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="InterPro:IPR025910" FT /db_xref="UniProtKB/TrEMBL:K0ID04" FT /protein_id="AFU50445.1" FT /translation="MATITKKQVWRPKEKVVSEPPKTEVQESRTTLLFHDYAEVEDFIQ FT RFPAGSVFWTTKGKPKTIVNNLFKATQYGLAYDIAAEVYVCPICMTCARNKVYFTTNHQ FT NCGELFRNKQAYISTSLRLEVIDTFDVFPRYATIEQEKLVGDWMADMEAYAHSEDDSID FT IPYQIFNDNTGEVEERVKQVDLSVYGEIEEVERTYKVKIARSNATMLPHQRRANRVIMR FT TNEIKELIDSTLEICHNRNIKVSFVDHERKKRLFPRIPLQHTIEPQALCDPHHDIIPAT FT EKFIHQWKDVGEPTMHINEQWVQKGWSGVILHKEDLEAHPNLQEKCVDNLFVVLGRCKH FT GDLQNALKPDCCEELVFYTDGHKAKSHLFWDAIMKCHPDDHKFVDTTWNDEAYANMGYW FT LAATYPFRVVCKECSSIKSVREWVQNMRSSKAYQLLRGGTSKHSRDLFRWLAAIQSELM FT TFSIRDAQNTQEDLNRNFLGTIPIGPIFDVANQMNQAVVDIQRGLQQMHKLITDAELTH FT QSRDEQILNEIARLRGLEFMQTERLMTNMKHVAMTYRNLINTASQPLSIHTMRQLLLDA FT RSDEAYEFDIMRGKGAIAIVAPGVFRKFDNIYSEPGVYNPEWTHLTPGGEIRTDFDYLR FT TDLKISQLHDKIHKWPENPLVDETCIVSEGEMSYHLCERVYECFVPIPHILRVGNPQNP FT " FT mat_peptide 200..1273 FT /product="P1 protein" FT mat_peptide 1274..>2280 FT /product="Hc-Pro protein" XX SQ Sequence 2280 BP; 741 A; 466 C; 501 G; 572 T; 0 other; aaatgtaatt tcaaattgac tacaatcaac tctcttccaa tcgcgcaagc tctcacaagc 60 cttcaaaagc gaccccaaga gcacagtagc cgaactcggg tggagacacg ccgggtgcta 120 ctgtttagtg cgatccagag agattatagc tttggccaga ggcggtttaa cgataagttc 180 acgagtcgtc tgggaagcta tggcaaccat cactaagaag caagtgtgga gaccaaagga 240 gaaggtggtt agcgaaccac ccaagactga agttcaagag tcgcgcacga ctctactttt 300 tcacgactat gcggaagtcg aggacttcat tcaacgcttc cctgctggaa gtgtcttctg 360 gacaactaag ggcaagccaa aaacgattgt aaacaatttg tttaaggcaa cacagtatgg 420 actggcttat gacatagccg cagaagtata tgtgtgccct atatgtatga cttgtgcacg 480 caataaagtg tacttcacca caaaccatca gaactgtggt gagcttttca gaaacaaaca 540 agcatacatt tcaacttctc ttaggctcga agttattgac acctttgatg tttttccacg 600 atatgcaact attgagcaag agaaattagt tggagattgg atggctgata tggaagctta 660 tgctcattct gaggacgact caattgatat cccataccaa atcttcaacg acaacactgg 720 cgaagtcgag gaacgagtaa aacaggtaga tttgtcagtg tatggtgaaa ttgaagaagt 780 ggagcgaact tataaggtta aaattgcgcg ctctaatgct acaatgttac cacaccagcg 840 tcgcgcaaat cgagtaatca tgcgaaccaa tgaaattaag gaattaattg attccacgct 900 cgaaatatgc cacaacagaa atataaaagt gagttttgtt gatcacgagc gaaagaaaag 960 gctatttcca cgaatccctt tgcaacacac tattgaacct caggcattgt gtgatcctca 1020 tcatgacatc attccagcta ccgaaaagtt tattcaccaa tggaaagatg ttggagaacc 1080 cacgatgcac atcaatgagc aatgggttca gaaaggatgg agtggcgtta ttttgcataa 1140 agaagatcta gaagcccacc ctaatctcca agagaaatgt gtagacaatc tatttgttgt 1200 acttggaaga tgtaaacatg gagatttaca aaatgcctta aaaccagatt gctgcgagga 1260 actagtgttt tacacagacg ggcataaggc aaaatcacat ctattttggg acgcgataat 1320 gaaatgccat cctgatgacc ataagtttgt tgacacaaca tggaatgatg aagcttatgc 1380 aaacatgggt tattggttgg ctgcaacgta cccatttaga gttgtctgta aagaatgttc 1440 aagtatcaag tctgttcgtg aatgggtgca aaacatgcga tcttctaaag cttatcaact 1500 tctaaggggc ggaacatcaa agcactcgcg agatttattt agatggctgg ctgcaatcca 1560 atctgaatta atgactttca gtattagaga cgcgcaaaac acacaagagg accttaatag 1620 aaactttctt gggacaatac ctatcggtcc aatatttgat gtggcaaatc aaatgaatca 1680 agcagtggtt gatatccaaa gaggactaca acagatgcat aagctaatca cggatgcaga 1740 gctaacacat caatcgcgag atgagcaaat cctaaacgag attgcacgac tccgggggtt 1800 agagtttatg caaacagaga gactcatgac gaacatgaag catgtcgcta tgacctacag 1860 aaatttaata aacaccgcta gccaaccact atcaatacat acaatgcgac aactcctact 1920 tgatgctcgc agcgacgaag cttatgaatt tgatatcatg cgaggcaagg gcgcaattgc 1980 aatagttgca cctggggttt ttcggaaatt tgataatata tactcagaac ccggtgtata 2040 caatccagag tggactcatt tgacgccagg aggggaaata cgaactgatt tcgattattt 2100 gcgcacagac ctcaaaatct cgcagttgca cgacaagatc cataaatggc ctgaaaatcc 2160 acttgttgat gaaacgtgca ttgtgtctga aggagaaatg tcataccatt tgtgtgagcg 2220 agtttatgaa tgctttgttc ccataccaca cattttgcga gttggcaatc cacagaatcc 2280 //